Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47157 * 2 1 4 4 N 1.46502 * 109.46776 * 240.00204 * 2 1 3 5 5 C 1.36936 * 119.99770 * 84.72791 * 4 2 1 6 6 H 1.08005 * 120.00282 * 359.97438 * 5 4 2 7 7 C 1.38819 * 120.00148 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99739 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99919 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47410 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46757 * 119.99646 * 9 7 5 12 12 H 1.48505 * 109.46895 * 239.99387 * 9 7 5 13 13 C 1.52997 * 109.47231 * 120.00908 * 2 1 3 14 14 H 1.09000 * 110.89346 * 60.69283 * 13 2 1 15 15 C 1.55162 * 111.00176 * 296.81357 * 13 2 1 16 16 C 1.54359 * 102.92297 * 206.45475 * 15 13 2 17 17 N 1.47021 * 107.29005 * 22.14260 * 16 15 13 18 18 C 1.34777 * 125.65201 * 181.12806 * 17 16 15 19 19 O 1.21583 * 120.00017 * 174.64710 * 18 17 16 20 20 C 1.47636 * 119.99969 * 354.65014 * 18 17 16 21 21 C 1.39701 * 120.15085 * 315.79936 * 20 18 17 22 22 C 1.37788 * 119.88929 * 180.02562 * 21 20 18 23 23 C 1.38611 * 120.20735 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 119.84492 * 180.02562 * 23 22 21 25 25 C 1.38355 * 120.31241 * 0.02562 * 23 22 21 26 26 C 1.38258 * 120.10250 * 359.68730 * 25 23 22 27 27 F 1.35097 * 120.10695 * 180.29653 * 26 25 23 28 28 C 1.47423 * 108.70127 * 1.08771 * 17 16 15 29 29 H 1.09003 * 109.46883 * 299.99260 * 1 2 3 30 30 H 1.08999 * 109.47415 * 59.99549 * 1 2 3 31 31 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00252 * 264.99932 * 4 2 1 33 33 H 0.96997 * 119.99716 * 180.02562 * 8 7 5 34 34 H 1.09004 * 110.72009 * 324.79265 * 15 13 2 35 35 H 1.09001 * 110.71707 * 88.05880 * 15 13 2 36 36 H 1.09004 * 109.85092 * 262.73647 * 16 15 13 37 37 H 1.09003 * 110.03121 * 141.65294 * 16 15 13 38 38 H 1.07999 * 120.05423 * 359.97438 * 21 20 18 39 39 H 1.08002 * 119.89530 * 180.02562 * 22 21 20 40 40 H 1.07993 * 119.94672 * 179.97438 * 25 23 22 41 41 H 1.09002 * 110.36939 * 217.03238 * 28 17 16 42 42 H 1.09000 * 110.45852 * 94.75781 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8823 1.0380 -2.4268 7 6 2.6058 -0.6632 -3.5108 8 7 2.9239 -1.9389 -3.4505 9 14 2.7762 0.2668 -5.1219 10 1 2.3564 1.6776 -4.9259 11 1 4.1922 0.2287 -5.5680 12 1 1.9152 -0.3668 -6.1526 13 6 2.0400 -0.7214 1.2491 14 1 1.6997 -1.7568 1.2662 15 6 1.6094 0.0269 2.5383 16 6 2.7020 -0.3748 3.5519 17 7 3.8821 -0.7913 2.7803 18 6 5.0435 -1.2360 3.2997 19 8 5.9207 -1.6461 2.5645 20 6 5.2504 -1.2253 4.7615 21 6 4.8776 -0.1094 5.5148 22 6 5.0736 -0.1050 6.8786 23 6 5.6401 -1.2039 7.5053 24 17 5.8823 -1.1885 9.2243 25 6 6.0135 -2.3131 6.7674 26 6 5.8172 -2.3337 5.3990 27 9 6.1762 -3.4191 4.6791 28 6 3.5842 -0.6429 1.3441 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6318 -1.1528 33 1 3.2472 -2.3961 -4.2425 34 1 1.6107 1.1050 2.3771 35 1 0.6289 -0.3129 2.8721 36 1 2.3499 -1.2031 4.1668 37 1 2.9545 0.4757 4.1853 38 1 4.4371 0.7486 5.0288 39 1 4.7850 0.7574 7.4612 40 1 6.4547 -3.1659 7.2616 41 1 4.0409 -1.4534 0.7762 42 1 3.9381 0.3213 0.9793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501057510.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -65.375876 kcal Electronic energy + Delta-G solvation = -26846.385212 eV Core-core repulsion = 22766.170713 eV Total energy + Delta-G solvation = -4080.214499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.18856 -41.55107 -39.93629 -38.97670 -37.54570 -36.82262 -34.36400 -32.79984 -31.92066 -31.60169 -30.03348 -29.52499 -26.05604 -25.72086 -24.19648 -23.65659 -22.87101 -21.08044 -20.89310 -19.26225 -18.91603 -18.44580 -18.02925 -17.24488 -17.10031 -16.75998 -16.46667 -16.34659 -15.78394 -15.39029 -15.32350 -15.08675 -14.77823 -14.48256 -14.32642 -14.22706 -14.02812 -13.67746 -13.48170 -13.37679 -13.11558 -12.89721 -12.75617 -12.65694 -12.48033 -12.35933 -12.15335 -12.10179 -12.01103 -11.67077 -11.52631 -11.38032 -11.21234 -10.94273 -10.24257 -9.97095 -9.72500 -8.98302 -7.92223 -5.19698 -0.57789 -0.10513 0.84716 1.39376 1.45980 1.47068 1.56498 1.76023 2.27700 2.56798 2.95997 3.19949 3.41763 3.44706 3.61134 3.70451 3.81000 3.86695 3.90606 4.16980 4.19356 4.33829 4.43551 4.53725 4.58953 4.64627 4.66314 4.79137 4.86252 4.87716 4.88703 4.93706 4.99193 5.11704 5.12783 5.22706 5.34010 5.41742 5.43243 5.55095 5.67505 6.30139 6.35467 6.88634 7.35641 8.14204 8.34311 9.31829 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021682 B = 0.002357 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.099889 B =11876.052544 C =12648.306645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.051 0.949 4 N -0.740 5.740 5 C -0.227 4.227 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.300 1.300 12 H -0.296 1.296 13 C -0.094 4.094 14 H 0.070 0.930 15 C -0.111 4.111 16 C 0.090 3.910 17 N -0.607 5.607 18 C 0.561 3.439 19 O -0.583 6.583 20 C -0.168 4.168 21 C -0.036 4.036 22 C -0.105 4.105 23 C 0.011 3.989 24 Cl -0.038 7.038 25 C -0.148 4.148 26 C 0.134 3.866 27 F -0.140 7.140 28 C 0.123 3.877 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.368 0.632 33 H 0.247 0.753 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.165 0.835 41 H 0.034 0.966 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 6.958 31.176 31.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.069 0.931 4 N -0.379 5.379 5 C -0.359 4.359 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.228 1.228 12 H -0.223 1.223 13 C -0.114 4.114 14 H 0.089 0.911 15 C -0.148 4.148 16 C -0.031 4.031 17 N -0.339 5.339 18 C 0.351 3.649 19 O -0.463 6.463 20 C -0.172 4.172 21 C -0.055 4.055 22 C -0.124 4.124 23 C -0.016 4.016 24 Cl -0.009 7.009 25 C -0.167 4.167 26 C 0.113 3.887 27 F -0.119 7.119 28 C 0.000 4.000 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.193 0.807 39 H 0.202 0.798 40 H 0.183 0.817 41 H 0.053 0.947 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.599 6.857 30.844 31.603 hybrid contribution 0.807 -1.007 -1.857 2.261 sum 0.207 5.850 28.987 29.572 Atomic orbital electron populations 1.22279 0.96876 1.00838 1.01277 1.20442 0.93232 0.94867 0.84391 0.93085 1.42710 1.78477 1.10296 1.06459 1.19650 1.33888 0.94252 0.88087 0.90277 1.25544 1.03521 0.96850 1.01538 1.69838 1.53076 1.10470 1.29112 0.85144 0.76457 0.78449 0.80201 1.18563 1.22777 1.22346 1.22494 0.92051 1.00524 0.96329 0.91136 1.22753 0.99004 1.01797 0.91293 1.22631 0.83882 1.01626 0.94950 1.48537 1.13611 1.63361 1.08370 1.18232 0.81303 0.77195 0.88185 1.90842 1.44458 1.48497 1.62549 1.20010 1.07227 0.97497 0.92487 1.21505 0.94744 0.96103 0.93121 1.21438 0.98474 0.98577 0.93866 1.20951 0.99199 0.95089 0.86375 1.98422 1.95070 1.98473 1.08910 1.21038 1.04041 1.01097 0.90517 1.17753 0.97850 0.83373 0.89705 1.91548 1.89234 1.52728 1.78351 1.22059 0.96969 1.00465 0.80487 0.89701 0.94767 0.94274 0.80056 0.94397 0.88355 0.86967 0.89880 0.87338 0.80657 0.79774 0.81701 0.94722 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.30 71.98 0.67 -4.00 16 2 C 0.18 6.33 2.40 44.99 0.11 6.43 16 3 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 4 N -0.74 -36.45 4.90 -322.94 -1.58 -38.03 16 5 C -0.23 -12.44 9.93 84.04 0.83 -11.60 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 8 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 9 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 12 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 13 C -0.09 -2.72 2.64 -9.40 -0.02 -2.74 16 14 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.11 -1.82 5.44 31.80 0.17 -1.64 16 16 C 0.09 1.42 5.91 86.74 0.51 1.93 16 17 N -0.61 -16.85 3.33 -815.35 -2.71 -19.56 16 18 C 0.56 18.15 7.22 86.72 0.63 18.78 16 19 O -0.58 -25.71 16.68 -3.98 -0.07 -25.77 16 20 C -0.17 -3.83 5.40 -20.05 -0.11 -3.94 16 21 C -0.04 -0.46 8.43 22.52 0.19 -0.27 16 22 C -0.11 -0.90 9.81 22.25 0.22 -0.68 16 23 C 0.01 0.13 6.32 22.39 0.14 0.27 16 24 Cl -0.04 -0.38 28.94 -2.72 -0.08 -0.46 16 25 C -0.15 -2.36 9.79 22.30 0.22 -2.14 16 26 C 0.13 3.15 7.25 22.67 0.16 3.31 16 27 F -0.14 -4.32 16.38 44.97 0.74 -3.58 16 28 C 0.12 4.26 6.19 86.85 0.54 4.80 16 29 H 0.08 1.81 7.38 -2.39 -0.02 1.79 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.37 20.21 7.80 -92.71 -0.72 19.49 16 33 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.10 1.34 8.04 -2.39 -0.02 1.33 16 35 H 0.11 1.30 8.12 -2.39 -0.02 1.29 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.11 0.91 5.69 -2.39 -0.01 0.90 16 38 H 0.18 1.28 6.10 -2.91 -0.02 1.26 16 39 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 40 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.03 1.54 7.99 -2.39 -0.02 1.52 16 42 H 0.06 2.31 8.03 -2.39 -0.02 2.29 16 Total: -1.00 -79.76 367.71 3.67 -76.09 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.33 Total: 19.36 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 4.73 Total: 4.13 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -4.01 Total: -118.91 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.07 Total: -25.77 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.74 Total: -3.58 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -79.76 3.67 -76.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501057510.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.716 kcal (2) G-P(sol) polarization free energy of solvation -79.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds