Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28717 * 125.32127 * 2 1 4 4 N 1.28987 * 108.98736 * 179.76121 * 3 2 1 5 5 C 1.34185 * 107.25296 * 0.43247 * 4 3 2 6 6 C 1.47998 * 126.69908 * 179.83571 * 5 4 3 7 7 O 1.21541 * 120.00222 * 179.68810 * 6 5 4 8 8 N 1.34781 * 119.99966 * 359.69196 * 6 5 4 9 9 C 1.47580 * 134.49338 * 359.97438 * 8 6 5 10 10 C 1.53946 * 86.24073 * 204.69863 * 9 8 6 11 11 C 1.47927 * 134.63065 * 180.08559 * 8 6 5 12 12 H 1.08997 * 113.76931 * 269.60212 * 11 8 6 13 13 C 1.53002 * 113.77005 * 40.99378 * 11 8 6 14 14 N 1.46498 * 109.47243 * 281.49818 * 13 11 8 15 15 C 1.34776 * 120.00159 * 179.97438 * 14 13 11 16 16 O 1.21277 * 119.99995 * 0.02562 * 15 14 13 17 17 C 1.50709 * 120.00056 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47097 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99844 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00160 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99662 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00324 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46764 * 59.99842 * 23 21 19 25 25 H 1.48490 * 109.47114 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46851 * 300.00077 * 23 21 19 27 27 N 1.28876 * 125.32091 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47254 * 269.95504 * 1 2 3 29 29 H 1.09005 * 109.47107 * 29.95734 * 1 2 3 30 30 H 1.08996 * 109.47279 * 149.95738 * 1 2 3 31 31 H 1.09002 * 113.76914 * 90.34174 * 9 8 6 32 32 H 1.09000 * 113.77064 * 319.05647 * 9 8 6 33 33 H 1.09005 * 113.73852 * 90.68768 * 10 9 8 34 34 H 1.08995 * 113.74299 * 221.99004 * 10 9 8 35 35 H 1.08997 * 109.47251 * 41.49494 * 13 11 8 36 36 H 1.09000 * 109.47721 * 161.49970 * 13 11 8 37 37 H 0.97009 * 120.00248 * 359.97438 * 14 13 11 38 38 H 1.08997 * 109.46829 * 300.00354 * 17 15 14 39 39 H 1.09000 * 109.46645 * 59.99913 * 17 15 14 40 40 H 0.96997 * 119.99800 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2091 1.0502 0.0000 4 7 3.4469 0.6875 0.0051 5 6 3.4685 -0.6542 -0.0013 6 6 4.6692 -1.5195 -0.0022 7 8 4.5469 -2.7287 -0.0026 8 7 5.8983 -0.9665 -0.0026 9 6 6.4097 0.4179 -0.0027 10 6 7.6837 -0.1603 -0.6450 11 6 7.2780 -1.5002 -0.0051 12 1 7.6913 -1.6540 0.9917 13 6 7.4709 -2.7067 -0.9260 14 7 6.9479 -3.9088 -0.2719 15 6 7.0103 -5.0993 -0.9006 16 8 7.4997 -5.1755 -2.0077 17 6 6.4728 -6.3360 -0.2276 18 16 6.7009 -7.7632 -1.3170 19 6 6.0065 -9.0311 -0.3096 20 1 5.6087 -8.7894 0.6649 21 6 5.9698 -10.3404 -0.7689 22 7 6.4542 -10.6350 -1.9568 23 14 5.2330 -11.6845 0.2989 24 1 3.8115 -11.3650 0.5860 25 1 5.3144 -12.9841 -0.4149 26 1 5.9880 -11.7728 1.5746 27 7 2.2101 -1.0515 -0.0005 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 6.5678 0.8279 0.9948 32 1 5.8549 1.0911 -0.6562 33 1 7.6603 -0.1697 -1.7348 34 1 8.6065 0.2570 -0.2422 35 1 6.9355 -2.5397 -1.8606 36 1 8.5326 -2.8391 -1.1340 37 1 6.5568 -3.8479 0.6137 38 1 7.0088 -6.5031 0.7067 39 1 5.4112 -6.2037 -0.0188 40 1 6.4289 -11.5500 -2.2776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505620566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = 108.858462 kcal Electronic energy + Delta-G solvation = -26359.937809 eV Core-core repulsion = 22341.535097 eV Total energy + Delta-G solvation = -4018.402712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.80755 -40.78532 -38.76928 -38.03774 -35.66619 -34.21286 -33.55245 -32.33319 -30.92977 -29.82911 -28.99706 -27.58463 -25.56534 -25.37543 -23.63854 -23.21899 -22.34992 -20.24469 -19.84688 -18.34520 -18.03535 -17.71827 -17.11874 -16.72114 -16.52488 -15.95812 -15.16232 -15.06236 -14.71937 -14.59740 -14.35521 -14.18726 -13.89335 -13.83572 -13.72160 -13.05802 -12.93351 -12.75178 -12.53177 -12.51197 -12.31989 -11.90261 -11.60039 -11.55618 -11.51916 -11.27231 -10.96547 -10.94535 -10.79632 -10.68089 -10.41687 -9.71942 -9.21099 -9.14456 -8.96967 -8.66117 -8.11344 -6.37788 -6.12162 -3.81114 0.59827 1.06978 1.28997 2.15437 2.79746 3.16287 3.29845 3.31237 3.33577 3.34569 3.41721 3.66036 3.82102 4.05476 4.30168 4.30597 4.32482 4.51030 4.60637 4.62442 4.72413 4.76845 4.95730 5.05143 5.13432 5.22506 5.27843 5.34712 5.41658 5.52559 5.63363 5.67299 5.84320 5.96477 6.09520 6.35109 6.79945 7.15288 7.55871 7.69021 7.82836 7.93868 8.45090 8.82488 9.32890 10.95353 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.002571 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.397809 B =10888.468286 C =12706.233198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.134 5.134 3 N -0.059 5.059 4 N -0.254 5.254 5 C 0.136 3.864 6 C 0.632 3.368 7 O -0.485 6.485 8 N -0.629 5.629 9 C 0.107 3.893 10 C -0.144 4.144 11 C 0.132 3.868 12 H 0.108 0.892 13 C 0.120 3.880 14 N -0.725 5.725 15 C 0.537 3.463 16 O -0.526 6.526 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.243 5.243 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.400 0.600 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 30.249 7.188 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.047 5.047 3 N -0.053 5.053 4 N -0.129 5.129 5 C -0.148 4.148 6 C 0.414 3.586 7 O -0.354 6.354 8 N -0.367 5.367 9 C -0.015 4.015 10 C -0.182 4.182 11 C 0.030 3.970 12 H 0.126 0.874 13 C -0.005 4.005 14 N -0.380 5.380 15 C 0.323 3.677 16 O -0.401 6.401 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.097 5.097 28 H 0.125 0.875 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.426 29.718 5.200 30.846 hybrid contribution -1.387 -1.037 2.487 3.030 sum -7.812 28.680 7.687 30.703 Atomic orbital electron populations 1.22596 0.68255 1.07436 1.06556 1.50271 1.11245 1.00598 1.42569 1.78913 0.96444 1.14166 1.15751 1.76123 1.10000 1.10192 1.16574 1.25227 0.93006 0.90185 1.06398 1.15689 0.79488 0.85424 0.77956 1.90954 1.84414 1.12248 1.47777 1.49941 1.03457 1.10428 1.72851 1.23275 0.92030 0.84510 1.01671 1.23588 0.98428 0.93927 1.02290 1.23353 0.78282 0.95138 1.00216 0.87412 1.21423 1.00229 0.83137 0.95688 1.45816 1.63911 1.06719 1.21540 1.20196 0.77887 0.83861 0.85728 1.90676 1.44189 1.85841 1.19429 1.23495 1.03921 0.98172 1.04473 1.85309 1.79974 0.95277 1.22993 1.22847 1.45849 0.94366 1.05034 0.91038 1.24986 0.95267 0.97945 0.95441 1.70019 1.43275 1.19970 1.17214 0.86233 0.79526 0.79891 0.79896 1.19975 1.20868 1.19986 1.75175 1.02421 1.14219 1.17926 0.87514 0.86491 0.86535 0.89102 0.88770 0.88127 0.88592 0.91141 0.89879 0.76503 0.89501 0.89095 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.24 11.62 59.84 0.70 0.94 16 2 N -0.13 -1.17 4.39 -16.65 -0.07 -1.25 16 3 N -0.06 -0.59 13.23 60.35 0.80 0.21 16 4 N -0.25 -2.81 10.98 32.09 0.35 -2.46 16 5 C 0.14 1.71 8.08 -156.25 -1.26 0.45 16 6 C 0.63 8.44 7.97 -12.26 -0.10 8.34 16 7 O -0.48 -8.18 15.26 5.33 0.08 -8.10 16 8 N -0.63 -6.16 3.50 -171.15 -0.60 -6.76 16 9 C 0.11 0.65 7.91 -2.97 -0.02 0.62 16 10 C -0.14 -0.71 7.86 -25.80 -0.20 -0.92 16 11 C 0.13 1.07 4.29 -66.68 -0.29 0.78 16 12 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 13 C 0.12 1.48 5.33 -4.04 -0.02 1.46 16 14 N -0.73 -11.38 4.28 -60.29 -0.26 -11.64 16 15 C 0.54 11.24 7.85 -10.98 -0.09 11.15 16 16 O -0.53 -12.87 15.86 5.56 0.09 -12.78 16 17 C -0.15 -3.39 6.16 36.01 0.22 -3.17 16 18 S -0.06 -1.80 20.57 -107.50 -2.21 -4.01 16 19 C -0.53 -15.96 9.50 30.94 0.29 -15.67 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 22 N -0.87 -27.14 13.22 55.49 0.73 -26.40 16 23 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 N -0.24 -3.00 12.17 32.11 0.39 -2.61 16 28 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.59 7.51 -51.93 -0.39 0.20 16 33 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 5.72 7.56 -40.82 -0.31 5.41 16 38 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16 40 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -41.55 367.11 -5.95 -47.49 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.89 Total: -0.49 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.87 Total: 6.04 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 1.34 Total: -50.91 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.17 Total: -20.88 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -41.55 -5.95 -47.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505620566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.352 kcal (2) G-P(sol) polarization free energy of solvation -41.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds