Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28717 * 125.32127 * 2 1 4 4 N 1.28987 * 108.98736 * 179.76121 * 3 2 1 5 5 C 1.34185 * 107.25296 * 0.43247 * 4 3 2 6 6 C 1.47998 * 126.69908 * 179.83571 * 5 4 3 7 7 O 1.21541 * 120.00222 * 179.68810 * 6 5 4 8 8 N 1.34781 * 119.99966 * 359.69196 * 6 5 4 9 9 C 1.47580 * 134.49338 * 359.97438 * 8 6 5 10 10 C 1.53946 * 86.24073 * 204.69863 * 9 8 6 11 11 C 1.47927 * 134.63065 * 180.08559 * 8 6 5 12 12 H 1.08997 * 113.76931 * 269.60212 * 11 8 6 13 13 C 1.53002 * 113.77005 * 40.99378 * 11 8 6 14 14 N 1.46498 * 109.47243 * 281.49818 * 13 11 8 15 15 C 1.34776 * 120.00159 * 179.97438 * 14 13 11 16 16 O 1.21277 * 119.99995 * 0.02562 * 15 14 13 17 17 C 1.50709 * 120.00056 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47097 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99844 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00160 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99662 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00324 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46764 * 59.99842 * 23 21 19 25 25 H 1.48490 * 109.47114 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46851 * 300.00077 * 23 21 19 27 27 N 1.28876 * 125.32091 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47254 * 269.95504 * 1 2 3 29 29 H 1.09005 * 109.47107 * 29.95734 * 1 2 3 30 30 H 1.08996 * 109.47279 * 149.95738 * 1 2 3 31 31 H 1.09002 * 113.76914 * 90.34174 * 9 8 6 32 32 H 1.09000 * 113.77064 * 319.05647 * 9 8 6 33 33 H 1.09005 * 113.73852 * 90.68768 * 10 9 8 34 34 H 1.08995 * 113.74299 * 221.99004 * 10 9 8 35 35 H 1.08997 * 109.47251 * 41.49494 * 13 11 8 36 36 H 1.09000 * 109.47721 * 161.49970 * 13 11 8 37 37 H 0.97009 * 120.00248 * 359.97438 * 14 13 11 38 38 H 1.08997 * 109.46829 * 300.00354 * 17 15 14 39 39 H 1.09000 * 109.46645 * 59.99913 * 17 15 14 40 40 H 0.96997 * 119.99800 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2091 1.0502 0.0000 4 7 3.4469 0.6875 0.0051 5 6 3.4685 -0.6542 -0.0013 6 6 4.6692 -1.5195 -0.0022 7 8 4.5469 -2.7287 -0.0026 8 7 5.8983 -0.9665 -0.0026 9 6 6.4097 0.4179 -0.0027 10 6 7.6837 -0.1603 -0.6450 11 6 7.2780 -1.5002 -0.0051 12 1 7.6913 -1.6540 0.9917 13 6 7.4709 -2.7067 -0.9260 14 7 6.9479 -3.9088 -0.2719 15 6 7.0103 -5.0993 -0.9006 16 8 7.4997 -5.1755 -2.0077 17 6 6.4728 -6.3360 -0.2276 18 16 6.7009 -7.7632 -1.3170 19 6 6.0065 -9.0311 -0.3096 20 1 5.6087 -8.7894 0.6649 21 6 5.9698 -10.3404 -0.7689 22 7 6.4542 -10.6350 -1.9568 23 14 5.2330 -11.6845 0.2989 24 1 3.8115 -11.3650 0.5860 25 1 5.3144 -12.9841 -0.4149 26 1 5.9880 -11.7728 1.5746 27 7 2.2101 -1.0515 -0.0005 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 6.5678 0.8279 0.9948 32 1 5.8549 1.0911 -0.6562 33 1 7.6603 -0.1697 -1.7348 34 1 8.6065 0.2570 -0.2422 35 1 6.9355 -2.5397 -1.8606 36 1 8.5326 -2.8391 -1.1340 37 1 6.5568 -3.8479 0.6137 38 1 7.0088 -6.5031 0.7067 39 1 5.4112 -6.2037 -0.0188 40 1 6.4289 -11.5500 -2.2776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505620566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = 75.322692 kcal Electronic energy + Delta-G solvation = -26361.392029 eV Core-core repulsion = 22341.535097 eV Total energy + Delta-G solvation = -4019.856932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.57892 -41.60700 -40.33327 -38.95156 -36.34723 -35.58818 -34.59835 -34.37041 -31.91954 -31.14891 -29.50147 -28.77533 -27.64237 -26.36193 -24.41066 -23.94801 -23.07444 -21.73919 -20.65137 -19.88102 -18.97551 -18.75119 -17.94558 -17.71383 -17.60421 -17.47575 -16.89389 -16.53154 -16.26158 -15.78922 -15.42685 -15.14034 -15.06794 -14.60850 -14.46560 -14.33588 -14.23037 -13.92902 -13.54428 -13.28620 -13.18570 -13.18404 -13.02692 -12.87203 -12.66073 -12.45233 -12.37497 -12.28682 -12.01652 -11.73336 -11.51531 -11.33789 -11.14311 -10.91119 -10.31520 -10.07259 -9.89263 -8.68309 -8.35554 -6.14139 -0.20194 0.22999 0.72013 1.24989 1.42604 1.42839 1.47753 1.56644 1.64298 1.87446 2.26002 2.33789 2.60629 2.96529 2.97750 3.30348 3.43617 3.70864 3.83355 3.95094 4.02694 4.03481 4.13885 4.18450 4.25821 4.34283 4.45120 4.47092 4.48638 4.57827 4.73650 4.78342 4.92504 4.96118 5.05706 5.32526 5.39629 5.45859 6.18491 6.36446 6.47998 6.69822 7.00923 7.04721 7.25238 8.73823 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.002571 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.397809 B =10888.468286 C =12706.233198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.118 5.118 3 N -0.061 5.061 4 N -0.256 5.256 5 C 0.120 3.880 6 C 0.623 3.377 7 O -0.537 6.537 8 N -0.628 5.628 9 C 0.107 3.893 10 C -0.123 4.123 11 C 0.131 3.869 12 H 0.137 0.863 13 C 0.116 3.884 14 N -0.702 5.702 15 C 0.536 3.464 16 O -0.569 6.569 17 C -0.127 4.127 18 S -0.146 6.146 19 C -0.550 4.550 20 H 0.079 0.921 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.260 1.260 27 N -0.273 5.273 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.410 0.590 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 32.235 9.410 34.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.033 5.033 3 N -0.055 5.055 4 N -0.130 5.130 5 C -0.164 4.164 6 C 0.406 3.594 7 O -0.411 6.411 8 N -0.365 5.365 9 C -0.013 4.013 10 C -0.161 4.161 11 C 0.029 3.971 12 H 0.154 0.846 13 C -0.008 4.008 14 N -0.354 5.354 15 C 0.322 3.678 16 O -0.448 6.448 17 C -0.278 4.278 18 S 0.081 5.919 19 C -0.697 4.697 20 H 0.097 0.903 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.185 1.185 27 N -0.129 5.129 28 H 0.148 0.852 29 H 0.163 0.837 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.246 0.754 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.796 31.816 7.455 33.377 hybrid contribution -1.339 -1.446 1.792 2.663 sum -8.135 30.370 9.246 32.772 Atomic orbital electron populations 1.23232 0.65156 1.09307 1.08678 1.50766 1.12680 0.99470 1.40352 1.78828 0.96338 1.14413 1.15883 1.76073 1.10670 1.09395 1.16887 1.25197 0.93046 0.90695 1.07453 1.15972 0.80650 0.85036 0.77697 1.90902 1.85348 1.14152 1.50717 1.50254 1.02912 1.12509 1.70775 1.23577 0.91795 0.82697 1.03256 1.23575 0.99488 0.90987 1.02057 1.23657 0.77760 0.94590 1.01060 0.84563 1.21674 1.00227 0.83204 0.95715 1.45651 1.62149 1.06165 1.21483 1.19923 0.77822 0.84844 0.85241 1.90656 1.46516 1.86526 1.21135 1.23328 1.04548 0.96254 1.03696 1.85435 1.80573 0.99143 1.26709 1.23166 1.46344 0.94935 1.05293 0.90299 1.26163 0.95326 1.00718 0.96941 1.70180 1.44395 1.20838 1.19296 0.84976 0.78844 0.76018 0.77964 1.18881 1.19966 1.18498 1.75129 1.02920 1.15808 1.19001 0.85164 0.83665 0.85680 0.86546 0.89002 0.88508 0.84724 0.93512 0.88723 0.75403 0.87362 0.88809 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.62 127.77 1.49 1.74 16 2 N -0.12 -1.95 4.39 -206.59 -0.91 -2.86 16 3 N -0.06 -1.15 13.23 37.02 0.49 -0.66 16 4 N -0.26 -5.47 10.98 -52.37 -0.58 -6.04 16 5 C 0.12 3.02 8.08 137.15 1.11 4.13 16 6 C 0.62 16.76 7.97 86.83 0.69 17.46 16 7 O -0.54 -18.73 15.26 -3.84 -0.06 -18.78 16 8 N -0.63 -11.47 3.50 -813.69 -2.85 -14.33 16 9 C 0.11 0.99 7.91 86.48 0.68 1.67 16 10 C -0.12 -0.79 7.86 31.24 0.25 -0.55 16 11 C 0.13 1.81 4.29 45.02 0.19 2.00 16 12 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 13 C 0.12 2.77 5.33 86.38 0.46 3.23 16 14 N -0.70 -21.91 4.28 -463.06 -1.98 -23.90 16 15 C 0.54 22.91 7.85 87.66 0.69 23.60 16 16 O -0.57 -28.89 15.86 -3.02 -0.05 -28.93 16 17 C -0.13 -5.85 6.16 71.24 0.44 -5.42 16 18 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 19 C -0.55 -33.46 9.50 67.96 0.65 -32.82 16 20 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -58.05 13.22 21.65 0.29 -57.77 16 23 Si 1.00 45.58 29.55 68.60 2.03 47.61 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 N -0.27 -6.76 12.17 -52.32 -0.64 -7.40 16 28 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.15 -0.32 8.14 -2.38 -0.02 -0.34 16 30 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.95 7.51 -2.39 -0.02 0.94 16 33 H 0.10 0.77 8.10 -2.38 -0.02 0.75 16 34 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 11.45 7.56 -92.70 -0.70 10.75 16 38 H 0.11 4.47 8.14 -2.40 -0.02 4.45 16 39 H 0.09 4.25 8.14 -2.39 -0.02 4.23 16 40 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -95.58 367.11 2.08 -93.50 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.39 Total: 13.15 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 7.11 Total: 16.30 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -6.18 Total: -112.95 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.11 Total: -47.72 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -95.58 2.08 -93.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505620566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.823 kcal (2) G-P(sol) polarization free energy of solvation -95.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds