Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28726 * 125.32097 * 2 1 4 4 N 1.28979 * 108.98892 * 179.97438 * 3 2 1 5 5 C 1.34190 * 107.25155 * 0.02562 * 4 3 2 6 6 C 1.48009 * 126.69791 * 180.02562 * 5 4 3 7 7 O 1.21535 * 119.99943 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00032 * 0.02562 * 6 5 4 9 9 C 1.47073 * 136.05759 * 0.05112 * 8 6 5 10 10 C 1.53496 * 87.98459 * 152.84637 * 9 8 6 11 11 C 1.47066 * 136.06033 * 180.02562 * 8 6 5 12 12 H 1.08999 * 113.46952 * 92.31372 * 11 8 6 13 13 C 1.53006 * 113.46555 * 321.93046 * 11 8 6 14 14 N 1.46500 * 109.46998 * 74.50583 * 13 11 8 15 15 C 1.34769 * 120.00237 * 180.02562 * 14 13 11 16 16 O 1.21282 * 119.99854 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00461 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47558 * 179.97438 * 17 15 14 19 19 C 1.76195 * 99.99992 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99977 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00173 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99847 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46936 * 90.00236 * 23 21 19 25 25 H 1.48500 * 109.47040 * 210.00100 * 23 21 19 26 26 H 1.48503 * 109.47066 * 330.00237 * 23 21 19 27 27 N 1.28870 * 125.32241 * 180.31410 * 2 1 3 28 28 H 1.09003 * 109.47009 * 90.02675 * 1 2 3 29 29 H 1.08998 * 109.46938 * 210.02737 * 1 2 3 30 30 H 1.09000 * 109.47078 * 330.02871 * 1 2 3 31 31 H 1.08999 * 113.46710 * 267.62599 * 9 8 6 32 32 H 1.09004 * 113.46541 * 38.00181 * 9 8 6 33 33 H 1.09000 * 114.20117 * 272.48060 * 10 9 8 34 34 H 1.09003 * 114.20368 * 139.65936 * 10 9 8 35 35 H 1.08993 * 109.46955 * 194.50808 * 13 11 8 36 36 H 1.09000 * 109.47050 * 314.50637 * 13 11 8 37 37 H 0.97010 * 119.99909 * 359.97438 * 14 13 11 38 38 H 1.08996 * 109.47077 * 300.00146 * 17 15 14 39 39 H 1.09004 * 109.46818 * 59.99313 * 17 15 14 40 40 H 0.97000 * 120.00339 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4470 0.6876 0.0005 5 6 3.4685 -0.6541 0.0003 6 6 4.6693 -1.5194 0.0013 7 8 4.5469 -2.7286 0.0005 8 7 5.8984 -0.9665 0.0031 9 6 6.4454 0.3987 0.0054 10 6 7.6917 -0.1601 0.7057 11 6 7.2828 -1.4627 0.0040 12 1 7.7061 -1.5702 -0.9947 13 6 7.4826 -2.7092 0.8685 14 7 6.9128 -3.8735 0.1857 15 6 6.9724 -5.0895 0.7636 16 8 7.4982 -5.2202 1.8486 17 6 6.3868 -6.2873 0.0610 18 16 6.6231 -7.7619 1.0836 19 6 5.8670 -8.9739 0.0521 20 1 5.4410 -8.6850 -0.8973 21 6 5.8190 -10.2998 0.4598 22 7 5.2547 -11.2053 -0.3110 23 14 6.5566 -10.7994 2.1017 24 1 5.5216 -10.6952 3.1615 25 1 7.0425 -12.2003 2.0203 26 1 7.6921 -9.8998 2.4285 27 7 2.2101 -1.0514 -0.0058 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5134 31 1 6.6461 0.7876 -0.9929 32 1 5.8750 1.0938 0.6215 33 1 7.6158 -0.1947 1.7925 34 1 8.6314 0.2629 0.3504 35 1 8.5480 -2.8701 1.0333 36 1 6.9836 -2.5702 1.8275 37 1 6.4919 -3.7689 -0.6821 38 1 5.3216 -6.1264 -0.1047 39 1 6.8866 -6.4264 -0.8977 40 1 5.2208 -12.1319 -0.0260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505620567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = 113.548903 kcal Electronic energy + Delta-G solvation = -26451.360908 eV Core-core repulsion = 22433.161589 eV Total energy + Delta-G solvation = -4018.199319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.82919 -40.99661 -38.86903 -38.18884 -35.68498 -34.29288 -33.57553 -32.34734 -31.01783 -29.94523 -29.04101 -27.61222 -25.63077 -25.50819 -23.63794 -23.21519 -22.49062 -20.32159 -19.95183 -18.39957 -18.05220 -17.75703 -17.15178 -16.76618 -16.54174 -16.07736 -15.21159 -15.14930 -14.86535 -14.62367 -14.37402 -14.22893 -13.93701 -13.78364 -13.69659 -13.23654 -13.06541 -12.82468 -12.70952 -12.58111 -12.37910 -11.99318 -11.68905 -11.59256 -11.53798 -11.21032 -11.12524 -10.93017 -10.81822 -10.50667 -10.46949 -9.76817 -9.33059 -9.19990 -8.91833 -8.74223 -8.37859 -6.79655 -6.20072 -3.90007 0.57665 1.04163 1.26752 2.12729 2.75024 2.91229 3.19876 3.32491 3.39772 3.44959 3.57971 3.64234 3.75623 3.95881 4.30119 4.30256 4.41669 4.44183 4.58722 4.62052 4.69479 4.71320 4.89048 4.93235 5.01361 5.11441 5.18948 5.24672 5.38152 5.45619 5.50844 5.60173 5.71653 5.87662 5.97510 6.23452 6.71503 7.13473 7.51876 7.79202 7.85462 8.03480 8.51815 8.70615 9.26480 10.89394 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002639 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.936162 B =10607.607570 C =12274.732840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.133 5.133 3 N -0.059 5.059 4 N -0.253 5.253 5 C 0.135 3.865 6 C 0.640 3.360 7 O -0.484 6.484 8 N -0.631 5.631 9 C 0.104 3.896 10 C -0.145 4.145 11 C 0.129 3.871 12 H 0.108 0.892 13 C 0.118 3.882 14 N -0.722 5.722 15 C 0.536 3.464 16 O -0.529 6.529 17 C -0.120 4.120 18 S -0.145 6.145 19 C -0.517 4.517 20 H 0.088 0.912 21 C 0.094 3.906 22 N -0.883 5.883 23 Si 0.857 3.143 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.235 1.235 27 N -0.242 5.242 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 32.222 -1.989 32.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.046 5.046 3 N -0.052 5.052 4 N -0.128 5.128 5 C -0.148 4.148 6 C 0.422 3.578 7 O -0.352 6.352 8 N -0.368 5.368 9 C -0.019 4.019 10 C -0.183 4.183 11 C 0.026 3.974 12 H 0.126 0.874 13 C -0.007 4.007 14 N -0.377 5.377 15 C 0.322 3.678 16 O -0.405 6.405 17 C -0.271 4.271 18 S 0.082 5.918 19 C -0.665 4.665 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.520 5.520 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.159 1.159 27 N -0.096 5.096 28 H 0.125 0.875 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.718 31.545 -0.220 31.765 hybrid contribution -0.804 -0.572 -1.224 1.572 sum -4.522 30.973 -1.444 31.335 Atomic orbital electron populations 1.22607 0.68197 1.07448 1.06609 1.50279 1.11267 1.00572 1.42513 1.78918 0.96420 1.14156 1.15738 1.76124 1.10026 1.10161 1.16526 1.25153 0.92942 0.90169 1.06575 1.15476 0.79099 0.85301 0.77888 1.90953 1.84244 1.12210 1.47839 1.49374 1.03507 1.11110 1.72821 1.23080 0.92159 0.85153 1.01494 1.23487 0.98691 0.94472 1.01664 1.23158 0.78694 0.95140 1.00374 0.87431 1.21488 0.99713 0.83639 0.95842 1.45788 1.61412 1.06727 1.23773 1.20160 0.78456 0.83592 0.85584 1.90673 1.43861 1.85232 1.20690 1.23240 1.04378 0.96306 1.03159 1.84692 1.78126 0.99187 1.29833 1.22344 1.42963 0.93791 1.07403 0.89440 1.24716 0.94009 0.95279 0.97399 1.69945 1.42621 1.02255 1.37196 0.86722 0.81817 0.79272 0.83963 1.19277 1.20050 1.15889 1.75175 1.02371 1.14227 1.17844 0.87473 0.86506 0.86474 0.89080 0.89002 0.87955 0.88160 0.89957 0.91158 0.76321 0.88363 0.88759 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.23 11.62 59.85 0.70 0.93 16 2 N -0.13 -1.15 4.39 -16.65 -0.07 -1.23 16 3 N -0.06 -0.57 13.23 60.35 0.80 0.22 16 4 N -0.25 -2.76 11.10 32.10 0.36 -2.41 16 5 C 0.14 1.68 8.10 -156.24 -1.27 0.41 16 6 C 0.64 8.31 7.99 -12.26 -0.10 8.21 16 7 O -0.48 -7.96 14.99 5.33 0.08 -7.88 16 8 N -0.63 -5.95 3.57 -178.49 -0.64 -6.58 16 9 C 0.10 0.59 7.80 -8.51 -0.07 0.52 16 10 C -0.14 -0.65 8.03 -26.21 -0.21 -0.86 16 11 C 0.13 0.98 4.07 -72.39 -0.29 0.68 16 12 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 13 C 0.12 1.38 5.36 -4.04 -0.02 1.36 16 14 N -0.72 -10.90 4.17 -60.29 -0.25 -11.15 16 15 C 0.54 10.73 7.85 -10.99 -0.09 10.65 16 16 O -0.53 -12.33 15.86 5.56 0.09 -12.24 16 17 C -0.12 -2.62 6.16 36.01 0.22 -2.40 16 18 S -0.14 -3.92 18.55 -107.50 -1.99 -5.92 16 19 C -0.52 -15.69 10.04 30.94 0.31 -15.38 16 20 H 0.09 2.77 8.03 -52.49 -0.42 2.35 16 21 C 0.09 2.87 5.50 -17.43 -0.10 2.77 16 22 N -0.88 -27.61 13.97 55.49 0.78 -26.83 16 23 Si 0.86 22.66 27.74 -169.99 -4.71 17.95 16 24 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.23 -6.19 6.74 56.52 0.38 -5.81 16 27 N -0.24 -2.94 12.17 32.11 0.39 -2.55 16 28 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.12 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.55 7.49 -51.93 -0.39 0.16 16 33 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 5.58 7.35 -40.82 -0.30 5.28 16 38 H 0.10 2.13 8.14 -51.92 -0.42 1.71 16 39 H 0.09 1.90 8.14 -51.91 -0.42 1.48 16 40 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -41.18 363.92 -5.52 -46.71 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.92 Total: -0.48 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.91 Total: 6.90 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 1.36 Total: -50.52 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.17 Total: -20.12 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -1.99 Total: -5.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -41.18 -5.52 -46.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505620567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.255 kcal (2) G-P(sol) polarization free energy of solvation -41.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds