Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28726 * 125.32097 * 2 1 4 4 N 1.28979 * 108.98892 * 179.97438 * 3 2 1 5 5 C 1.34190 * 107.25155 * 0.02562 * 4 3 2 6 6 C 1.48009 * 126.69791 * 180.02562 * 5 4 3 7 7 O 1.21535 * 119.99943 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00032 * 0.02562 * 6 5 4 9 9 C 1.47073 * 136.05759 * 0.05112 * 8 6 5 10 10 C 1.53496 * 87.98459 * 152.84637 * 9 8 6 11 11 C 1.47066 * 136.06033 * 180.02562 * 8 6 5 12 12 H 1.08999 * 113.46952 * 92.31372 * 11 8 6 13 13 C 1.53006 * 113.46555 * 321.93046 * 11 8 6 14 14 N 1.46500 * 109.46998 * 74.50583 * 13 11 8 15 15 C 1.34769 * 120.00237 * 180.02562 * 14 13 11 16 16 O 1.21282 * 119.99854 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00461 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47558 * 179.97438 * 17 15 14 19 19 C 1.76195 * 99.99992 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99977 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00173 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99847 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46936 * 90.00236 * 23 21 19 25 25 H 1.48500 * 109.47040 * 210.00100 * 23 21 19 26 26 H 1.48503 * 109.47066 * 330.00237 * 23 21 19 27 27 N 1.28870 * 125.32241 * 180.31410 * 2 1 3 28 28 H 1.09003 * 109.47009 * 90.02675 * 1 2 3 29 29 H 1.08998 * 109.46938 * 210.02737 * 1 2 3 30 30 H 1.09000 * 109.47078 * 330.02871 * 1 2 3 31 31 H 1.08999 * 113.46710 * 267.62599 * 9 8 6 32 32 H 1.09004 * 113.46541 * 38.00181 * 9 8 6 33 33 H 1.09000 * 114.20117 * 272.48060 * 10 9 8 34 34 H 1.09003 * 114.20368 * 139.65936 * 10 9 8 35 35 H 1.08993 * 109.46955 * 194.50808 * 13 11 8 36 36 H 1.09000 * 109.47050 * 314.50637 * 13 11 8 37 37 H 0.97010 * 119.99909 * 359.97438 * 14 13 11 38 38 H 1.08996 * 109.47077 * 300.00146 * 17 15 14 39 39 H 1.09004 * 109.46818 * 59.99313 * 17 15 14 40 40 H 0.97000 * 120.00339 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4470 0.6876 0.0005 5 6 3.4685 -0.6541 0.0003 6 6 4.6693 -1.5194 0.0013 7 8 4.5469 -2.7286 0.0005 8 7 5.8984 -0.9665 0.0031 9 6 6.4454 0.3987 0.0054 10 6 7.6917 -0.1601 0.7057 11 6 7.2828 -1.4627 0.0040 12 1 7.7061 -1.5702 -0.9947 13 6 7.4826 -2.7092 0.8685 14 7 6.9128 -3.8735 0.1857 15 6 6.9724 -5.0895 0.7636 16 8 7.4982 -5.2202 1.8486 17 6 6.3868 -6.2873 0.0610 18 16 6.6231 -7.7619 1.0836 19 6 5.8670 -8.9739 0.0521 20 1 5.4410 -8.6850 -0.8973 21 6 5.8190 -10.2998 0.4598 22 7 5.2547 -11.2053 -0.3110 23 14 6.5566 -10.7994 2.1017 24 1 5.5216 -10.6952 3.1615 25 1 7.0425 -12.2003 2.0203 26 1 7.6921 -9.8998 2.4285 27 7 2.2101 -1.0514 -0.0058 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5134 31 1 6.6461 0.7876 -0.9929 32 1 5.8750 1.0938 0.6215 33 1 7.6158 -0.1947 1.7925 34 1 8.6314 0.2629 0.3504 35 1 8.5480 -2.8701 1.0333 36 1 6.9836 -2.5702 1.8275 37 1 6.4919 -3.7689 -0.6821 38 1 5.3216 -6.1264 -0.1047 39 1 6.8866 -6.4264 -0.8977 40 1 5.2208 -12.1319 -0.0260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505620567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = 80.206066 kcal Electronic energy + Delta-G solvation = -26452.806762 eV Core-core repulsion = 22433.161589 eV Total energy + Delta-G solvation = -4019.645173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.58649 -41.76194 -40.37079 -39.07172 -36.35316 -35.60225 -34.69251 -34.37786 -31.96031 -31.23353 -29.52719 -28.74384 -27.84582 -26.40348 -24.35048 -23.91917 -23.19074 -21.76902 -20.70363 -19.94451 -19.00279 -18.75338 -17.98932 -17.72410 -17.63757 -17.48695 -17.10596 -16.57810 -16.21315 -15.70254 -15.43968 -15.17190 -15.07357 -14.92756 -14.57506 -14.35499 -14.23953 -13.98577 -13.68610 -13.37370 -13.32219 -13.21417 -13.03917 -12.95640 -12.71066 -12.48080 -12.37102 -12.29230 -11.91835 -11.77993 -11.52325 -11.38837 -11.18809 -10.94988 -10.57572 -10.08115 -9.91351 -9.01719 -8.53171 -6.24412 -0.20987 0.22106 0.70814 0.96862 1.30417 1.42996 1.47185 1.55858 1.59761 1.85769 2.23520 2.30257 2.62036 2.70629 2.84517 2.96535 3.36618 3.69137 3.83214 3.89984 3.99050 4.03014 4.13630 4.18192 4.19241 4.34078 4.44192 4.44885 4.47635 4.57626 4.73620 4.78533 4.91909 4.95322 5.06625 5.32612 5.43735 5.69113 6.09029 6.37685 6.44218 6.68681 6.91240 7.00277 7.20170 8.59780 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002639 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.936162 B =10607.607570 C =12274.732840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.118 5.118 3 N -0.061 5.061 4 N -0.255 5.255 5 C 0.120 3.880 6 C 0.631 3.369 7 O -0.536 6.536 8 N -0.631 5.631 9 C 0.102 3.898 10 C -0.122 4.122 11 C 0.127 3.873 12 H 0.136 0.864 13 C 0.113 3.887 14 N -0.701 5.701 15 C 0.538 3.462 16 O -0.566 6.566 17 C -0.109 4.109 18 S -0.169 6.169 19 C -0.531 4.531 20 H 0.057 0.943 21 C 0.045 3.955 22 N -0.918 5.918 23 Si 0.918 3.082 24 H -0.263 1.263 25 H -0.254 1.254 26 H -0.236 1.236 27 N -0.273 5.273 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.146 0.854 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.409 0.591 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 34.862 -1.891 35.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.033 5.033 3 N -0.055 5.055 4 N -0.130 5.130 5 C -0.164 4.164 6 C 0.415 3.585 7 O -0.409 6.409 8 N -0.367 5.367 9 C -0.019 4.019 10 C -0.160 4.160 11 C 0.025 3.975 12 H 0.154 0.846 13 C -0.010 4.010 14 N -0.353 5.353 15 C 0.323 3.677 16 O -0.446 6.446 17 C -0.260 4.260 18 S 0.058 5.942 19 C -0.679 4.679 20 H 0.076 0.924 21 C -0.161 4.161 22 N -0.556 5.556 23 Si 0.739 3.261 24 H -0.188 1.188 25 H -0.178 1.178 26 H -0.159 1.159 27 N -0.128 5.128 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.246 0.754 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.811 34.280 -0.160 34.395 hybrid contribution -1.204 -1.186 -1.351 2.164 sum -4.015 33.094 -1.511 33.371 Atomic orbital electron populations 1.23234 0.65150 1.09326 1.08665 1.50768 1.12683 0.99464 1.40343 1.78832 0.96332 1.14408 1.15879 1.76074 1.10670 1.09403 1.16851 1.25154 0.93004 0.90668 1.07534 1.15729 0.80231 0.84899 0.77677 1.90904 1.85170 1.14080 1.50774 1.49654 1.03046 1.13238 1.70714 1.23382 0.92003 0.83365 1.03113 1.23497 0.99744 0.91509 1.01250 1.23512 0.78029 0.94388 1.01536 0.84630 1.21761 0.99816 0.83853 0.95618 1.45667 1.59819 1.06122 1.23712 1.19798 0.78376 0.84476 0.85066 1.90653 1.45963 1.85863 1.22104 1.23224 1.04829 0.94884 1.03079 1.84536 1.77781 1.00988 1.30905 1.22461 1.43298 0.95217 1.06919 0.92436 1.25608 0.94289 0.95208 1.00953 1.70020 1.43535 1.02987 1.39044 0.85826 0.81050 0.79775 0.79445 1.18762 1.17845 1.15944 1.75130 1.02903 1.15811 1.18956 0.85231 0.85657 0.83622 0.86558 0.89297 0.88342 0.84290 0.88641 0.93291 0.75417 0.88508 0.87051 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.62 127.77 1.49 1.74 16 2 N -0.12 -1.94 4.39 -206.59 -0.91 -2.84 16 3 N -0.06 -1.13 13.23 37.02 0.49 -0.64 16 4 N -0.26 -5.39 11.10 -52.36 -0.58 -5.97 16 5 C 0.12 2.98 8.10 137.15 1.11 4.09 16 6 C 0.63 16.51 7.99 86.83 0.69 17.20 16 7 O -0.54 -18.21 14.99 -3.83 -0.06 -18.27 16 8 N -0.63 -10.97 3.57 -836.91 -2.98 -13.95 16 9 C 0.10 0.86 7.80 83.18 0.65 1.51 16 10 C -0.12 -0.64 8.03 30.93 0.25 -0.39 16 11 C 0.13 1.59 4.07 41.80 0.17 1.76 16 12 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 13 C 0.11 2.50 5.36 86.38 0.46 2.96 16 14 N -0.70 -20.74 4.17 -463.06 -1.93 -22.67 16 15 C 0.54 21.58 7.85 87.66 0.69 22.26 16 16 O -0.57 -26.57 15.86 -3.04 -0.05 -26.62 16 17 C -0.11 -4.83 6.16 71.24 0.44 -4.39 16 18 S -0.17 -9.25 18.55 -56.49 -1.05 -10.30 16 19 C -0.53 -33.01 10.04 67.95 0.68 -32.33 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 21 C 0.04 2.75 5.50 84.86 0.47 3.21 16 22 N -0.92 -58.11 13.97 21.65 0.30 -57.81 16 23 Si 0.92 46.94 27.74 68.60 1.90 48.84 16 24 H -0.26 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.25 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.24 -12.01 6.74 99.48 0.67 -11.34 16 27 N -0.27 -6.68 12.17 -52.31 -0.64 -7.31 16 28 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.86 7.49 -2.38 -0.02 0.85 16 33 H 0.10 0.67 8.12 -2.39 -0.02 0.65 16 34 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.41 11.11 7.35 -92.70 -0.68 10.43 16 38 H 0.10 4.31 8.14 -2.40 -0.02 4.29 16 39 H 0.11 4.50 8.14 -2.39 -0.02 4.48 16 40 H 0.28 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -92.91 363.92 1.97 -90.94 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.38 Total: 8.98 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 7.10 Total: 17.62 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -6.25 Total: -111.20 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.11 Total: -44.88 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.90 Total: 48.84 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.05 Total: -10.30 kcal Total: -92.91 1.97 -90.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505620567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.143 kcal (2) G-P(sol) polarization free energy of solvation -92.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds