Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99782 * 2 1 4 4 C 1.52997 * 109.46924 * 89.99779 * 3 2 1 5 5 N 1.46507 * 109.46533 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99708 * 180.02562 * 5 4 3 7 7 O 1.21557 * 119.99810 * 359.97438 * 6 5 4 8 8 C 1.47847 * 120.00139 * 180.02562 * 6 5 4 9 9 C 1.39599 * 120.13158 * 359.97438 * 8 6 5 10 10 C 1.37943 * 119.90789 * 180.02562 * 9 8 6 11 11 C 1.38347 * 120.17259 * 0.02562 * 10 9 8 12 12 C 1.38549 * 120.26638 * 359.97029 * 11 10 9 13 13 F 1.35105 * 119.95541 * 180.02562 * 12 11 10 14 14 C 1.38215 * 120.09537 * 0.02654 * 12 11 10 15 15 C 1.34776 * 120.00388 * 179.97438 * 2 1 3 16 16 O 1.21285 * 120.00159 * 179.97438 * 15 2 1 17 17 C 1.50697 * 119.99883 * 0.02562 * 15 2 1 18 18 S 1.81000 * 109.47146 * 179.97438 * 17 15 2 19 19 C 1.76206 * 100.00073 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99825 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00316 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99615 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00208 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47368 * 89.99804 * 23 21 19 25 25 H 1.48510 * 109.46932 * 209.99771 * 23 21 19 26 26 H 1.48496 * 109.47080 * 329.99611 * 23 21 19 27 27 H 1.09007 * 109.46906 * 90.00525 * 1 2 3 28 28 H 1.09000 * 109.46918 * 209.99915 * 1 2 3 29 29 H 1.08998 * 109.47654 * 330.00490 * 1 2 3 30 30 H 1.08999 * 109.46741 * 329.99688 * 3 2 1 31 31 H 1.09002 * 109.46563 * 209.99907 * 3 2 1 32 32 H 1.08999 * 109.47486 * 60.00365 * 4 3 2 33 33 H 1.08997 * 109.47167 * 299.99323 * 4 3 2 34 34 H 0.96993 * 120.00250 * 359.97438 * 5 4 3 35 35 H 1.08000 * 120.04473 * 0.05391 * 9 8 6 36 36 H 1.07993 * 119.91438 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.86585 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.09181 * 179.72723 * 14 12 11 39 39 H 1.09004 * 109.46915 * 299.99776 * 17 15 2 40 40 H 1.08999 * 109.47495 * 59.99311 * 17 15 2 41 41 H 0.97003 * 119.99727 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 7 3.1843 2.9796 1.4424 6 6 3.5216 3.5631 2.6096 7 8 3.2180 3.0365 3.6623 8 6 4.2597 4.8441 2.6096 9 6 4.6092 5.4515 1.4023 10 6 5.2984 6.6464 1.4076 11 6 5.6445 7.2441 2.6064 12 6 5.3012 6.6476 3.8089 13 9 5.6419 7.2370 4.9758 14 6 4.6106 5.4503 3.8163 15 6 2.1389 -1.1672 0.0005 16 8 3.3518 -1.1671 0.0001 17 6 1.3855 -2.4723 0.0005 18 16 2.5617 -3.8480 0.0005 19 6 1.4417 -5.2082 0.0013 20 1 0.3764 -5.0305 0.0020 21 6 1.9284 -6.5080 0.0010 22 7 3.2268 -6.7245 -0.0004 23 14 0.7410 -7.9501 0.0025 24 1 0.4247 -8.3324 -1.3971 25 1 1.3632 -9.1029 0.7021 26 1 -0.5088 -7.5614 0.7039 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6083 2.0284 -0.5139 31 1 3.1499 1.1384 -0.5138 32 1 3.0415 0.9509 1.9564 33 1 1.4999 1.8409 1.9562 34 1 3.4268 3.3995 0.6024 35 1 4.3400 4.9867 0.4653 36 1 5.5692 7.1161 0.4737 37 1 6.1844 8.1794 2.6048 38 1 4.3468 4.9832 4.7537 39 1 0.7585 -2.5298 0.8903 40 1 0.7591 -2.5302 -0.8896 41 1 3.5670 -7.6330 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527885051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = -84.957274 kcal Electronic energy + Delta-G solvation = -25190.513589 eV Core-core repulsion = 21111.493684 eV Total energy + Delta-G solvation = -4079.019906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.35250 -40.59124 -39.58583 -38.53547 -36.07718 -34.75483 -32.44256 -32.05683 -31.30591 -30.36291 -28.34613 -26.58018 -25.52046 -24.66235 -23.26576 -22.79802 -21.05366 -19.45308 -18.68243 -17.72163 -17.13062 -16.76083 -16.70637 -16.54871 -16.24781 -16.09633 -15.62844 -15.39383 -15.27353 -14.81544 -14.43302 -14.12124 -14.00215 -13.87446 -13.63962 -13.27783 -13.02210 -12.72307 -12.62598 -12.57908 -12.41079 -12.35543 -11.87090 -11.84532 -11.54826 -11.07415 -11.03915 -10.77333 -10.38691 -9.82817 -9.71036 -9.48331 -9.41521 -9.29012 -9.07938 -8.71701 -8.25325 -6.52254 -6.22994 -3.93990 0.19093 0.61290 2.36686 2.47304 2.94473 3.04154 3.21509 3.25107 3.26108 3.29910 3.57268 3.73287 4.13138 4.18388 4.18723 4.42080 4.51334 4.62020 4.68284 4.74108 5.02682 5.04058 5.12273 5.12713 5.19017 5.36275 5.40276 5.49639 5.52008 5.62071 5.63328 5.66561 5.72280 5.78167 5.87226 5.99229 6.09674 6.24140 6.49810 7.08252 7.38438 7.58240 7.82533 8.33707 8.44559 9.22332 10.84424 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.001712 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.576957 B =16346.629918 C =16670.579207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.108 3.892 4 C 0.102 3.898 5 N -0.719 5.719 6 C 0.558 3.442 7 O -0.527 6.527 8 C -0.102 4.102 9 C -0.097 4.097 10 C -0.096 4.096 11 C -0.131 4.131 12 C 0.093 3.907 13 F -0.135 7.135 14 C -0.096 4.096 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 29.831 -0.044 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.016 4.016 4 C -0.023 4.023 5 N -0.372 5.372 6 C 0.344 3.656 7 O -0.403 6.403 8 C -0.105 4.105 9 C -0.116 4.116 10 C -0.114 4.114 11 C -0.150 4.150 12 C 0.074 3.926 13 F -0.113 7.113 14 C -0.116 4.116 15 C 0.321 3.679 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.236 0.764 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.243 29.284 0.752 29.295 hybrid contribution -2.054 -0.582 -0.188 2.144 sum -1.812 28.702 0.564 28.764 Atomic orbital electron populations 1.21820 0.79176 1.03411 1.01981 1.47743 1.06997 1.05093 1.76101 1.21431 0.98973 0.85952 0.95226 1.21845 0.97087 0.84880 0.98454 1.45709 1.58573 1.24481 1.08404 1.18106 0.79275 0.84263 0.83961 1.90830 1.54017 1.64450 1.31042 1.19765 1.01375 0.95808 0.93582 1.21407 0.97441 0.95537 0.97243 1.20992 0.97443 0.95034 0.97953 1.21400 1.01035 1.01299 0.91220 1.17565 1.00051 0.93225 0.81751 1.91541 1.90349 1.83277 1.46173 1.21272 0.96844 0.93671 0.99766 1.20437 0.87982 0.84586 0.74864 1.90709 1.13698 1.86712 1.47339 1.23559 1.04616 0.97046 1.04863 1.85413 1.07993 0.93355 1.96717 1.22852 0.94293 0.92174 1.59045 0.90904 1.24994 0.95685 0.98393 0.94511 1.70019 1.11743 1.21691 1.46780 0.86164 0.80263 0.80710 0.78337 1.20270 1.20738 1.19683 0.92445 0.90371 0.91292 0.90148 0.89060 0.90234 0.91011 0.76431 0.84728 0.84098 0.84146 0.83222 0.89082 0.89128 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.24 59.84 0.61 1.34 16 2 N -0.62 -7.95 2.87 -181.57 -0.52 -8.47 16 3 C 0.11 1.08 5.52 -4.04 -0.02 1.06 16 4 C 0.10 1.12 6.00 -4.04 -0.02 1.09 16 5 N -0.72 -6.39 5.51 -61.25 -0.34 -6.72 16 6 C 0.56 6.26 7.77 -12.33 -0.10 6.17 16 7 O -0.53 -8.16 16.35 5.32 0.09 -8.07 16 8 C -0.10 -0.89 5.87 -104.98 -0.62 -1.51 16 9 C -0.10 -0.54 9.54 -39.18 -0.37 -0.92 16 10 C -0.10 -0.44 10.03 -39.65 -0.40 -0.84 16 11 C -0.13 -0.75 10.02 -39.43 -0.40 -1.15 16 12 C 0.09 0.76 7.29 -39.48 -0.29 0.47 16 13 F -0.13 -1.23 17.26 2.25 0.04 -1.19 16 14 C -0.10 -0.88 9.57 -39.11 -0.37 -1.26 16 15 C 0.53 9.67 7.69 -10.99 -0.08 9.58 16 16 O -0.51 -11.20 15.44 5.55 0.09 -11.11 16 17 C -0.15 -2.97 4.71 36.00 0.17 -2.80 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 29 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.08 0.52 8.07 -51.93 -0.42 0.11 16 31 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 2.15 6.51 -40.82 -0.27 1.89 16 35 H 0.13 0.38 6.40 -52.49 -0.34 0.04 16 36 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.15 1.48 7.65 -52.49 -0.40 1.08 16 39 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 40 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -37.35 374.08 -8.23 -45.58 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.02 Total: -1.14 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.69 Total: -1.58 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.13 Total: -40.52 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.17 Total: -19.18 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.35 -8.23 -45.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527885051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.379 kcal (2) G-P(sol) polarization free energy of solvation -37.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds