Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99782 * 2 1 4 4 C 1.52997 * 109.46924 * 89.99779 * 3 2 1 5 5 N 1.46507 * 109.46533 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99708 * 180.02562 * 5 4 3 7 7 O 1.21557 * 119.99810 * 359.97438 * 6 5 4 8 8 C 1.47847 * 120.00139 * 180.02562 * 6 5 4 9 9 C 1.39599 * 120.13158 * 359.97438 * 8 6 5 10 10 C 1.37943 * 119.90789 * 180.02562 * 9 8 6 11 11 C 1.38347 * 120.17259 * 0.02562 * 10 9 8 12 12 C 1.38549 * 120.26638 * 359.97029 * 11 10 9 13 13 F 1.35105 * 119.95541 * 180.02562 * 12 11 10 14 14 C 1.38215 * 120.09537 * 0.02654 * 12 11 10 15 15 C 1.34776 * 120.00388 * 179.97438 * 2 1 3 16 16 O 1.21285 * 120.00159 * 179.97438 * 15 2 1 17 17 C 1.50697 * 119.99883 * 0.02562 * 15 2 1 18 18 S 1.81000 * 109.47146 * 179.97438 * 17 15 2 19 19 C 1.76206 * 100.00073 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99825 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00316 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99615 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00208 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47368 * 89.99804 * 23 21 19 25 25 H 1.48510 * 109.46932 * 209.99771 * 23 21 19 26 26 H 1.48496 * 109.47080 * 329.99611 * 23 21 19 27 27 H 1.09007 * 109.46906 * 90.00525 * 1 2 3 28 28 H 1.09000 * 109.46918 * 209.99915 * 1 2 3 29 29 H 1.08998 * 109.47654 * 330.00490 * 1 2 3 30 30 H 1.08999 * 109.46741 * 329.99688 * 3 2 1 31 31 H 1.09002 * 109.46563 * 209.99907 * 3 2 1 32 32 H 1.08999 * 109.47486 * 60.00365 * 4 3 2 33 33 H 1.08997 * 109.47167 * 299.99323 * 4 3 2 34 34 H 0.96993 * 120.00250 * 359.97438 * 5 4 3 35 35 H 1.08000 * 120.04473 * 0.05391 * 9 8 6 36 36 H 1.07993 * 119.91438 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.86585 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.09181 * 179.72723 * 14 12 11 39 39 H 1.09004 * 109.46915 * 299.99776 * 17 15 2 40 40 H 1.08999 * 109.47495 * 59.99311 * 17 15 2 41 41 H 0.97003 * 119.99727 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 7 3.1843 2.9796 1.4424 6 6 3.5216 3.5631 2.6096 7 8 3.2180 3.0365 3.6623 8 6 4.2597 4.8441 2.6096 9 6 4.6092 5.4515 1.4023 10 6 5.2984 6.6464 1.4076 11 6 5.6445 7.2441 2.6064 12 6 5.3012 6.6476 3.8089 13 9 5.6419 7.2370 4.9758 14 6 4.6106 5.4503 3.8163 15 6 2.1389 -1.1672 0.0005 16 8 3.3518 -1.1671 0.0001 17 6 1.3855 -2.4723 0.0005 18 16 2.5617 -3.8480 0.0005 19 6 1.4417 -5.2082 0.0013 20 1 0.3764 -5.0305 0.0020 21 6 1.9284 -6.5080 0.0010 22 7 3.2268 -6.7245 -0.0004 23 14 0.7410 -7.9501 0.0025 24 1 0.4247 -8.3324 -1.3971 25 1 1.3632 -9.1029 0.7021 26 1 -0.5088 -7.5614 0.7039 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6083 2.0284 -0.5139 31 1 3.1499 1.1384 -0.5138 32 1 3.0415 0.9509 1.9564 33 1 1.4999 1.8409 1.9562 34 1 3.4268 3.3995 0.6024 35 1 4.3400 4.9867 0.4653 36 1 5.5692 7.1161 0.4737 37 1 6.1844 8.1794 2.6048 38 1 4.3468 4.9832 4.7537 39 1 0.7585 -2.5298 0.8903 40 1 0.7591 -2.5302 -0.8896 41 1 3.5670 -7.6330 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527885051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = -111.387871 kcal Electronic energy + Delta-G solvation = -25191.659706 eV Core-core repulsion = 21111.493684 eV Total energy + Delta-G solvation = -4080.166022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.99284 -41.40765 -40.81474 -39.22255 -37.20497 -35.78613 -34.58766 -32.76356 -31.98234 -31.34262 -29.50858 -27.69785 -27.44779 -25.43938 -23.96178 -23.52261 -21.87249 -20.69714 -19.65662 -19.36717 -18.12511 -17.82928 -17.29788 -17.28293 -17.15340 -16.88323 -16.78989 -16.67589 -16.43876 -16.34644 -15.74051 -15.03826 -15.00490 -14.85151 -14.47842 -14.32998 -14.27558 -14.19248 -13.56552 -13.31770 -13.23665 -13.17653 -13.09771 -12.92197 -12.87677 -12.64585 -12.44064 -12.39029 -11.72360 -11.31528 -11.14359 -10.93360 -10.42282 -10.27018 -10.13041 -9.85661 -9.79484 -8.67658 -8.34961 -6.13266 -0.39120 0.08856 1.23506 1.42358 1.42857 1.51328 1.56188 1.64581 1.80306 2.26215 2.31863 2.63673 2.99296 3.17046 3.26322 3.51551 3.69448 3.70890 3.80194 3.98337 4.01612 4.02486 4.21523 4.24502 4.33243 4.36730 4.48803 4.62365 4.71526 4.73037 4.87805 4.94031 4.97954 5.00878 5.12285 5.16134 5.21412 5.41521 5.53184 5.74096 6.18821 6.21105 6.35944 7.03128 7.06346 7.10928 8.74250 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.001712 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.576957 B =16346.629918 C =16670.579207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.112 3.888 4 C 0.110 3.890 5 N -0.701 5.701 6 C 0.554 3.446 7 O -0.582 6.582 8 C -0.121 4.121 9 C -0.084 4.084 10 C -0.085 4.085 11 C -0.120 4.120 12 C 0.073 3.927 13 F -0.147 7.147 14 C -0.118 4.118 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.125 4.125 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.258 1.258 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.420 0.580 35 H 0.168 0.832 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 32.144 -2.482 32.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C -0.011 4.011 4 C -0.015 4.015 5 N -0.354 5.354 6 C 0.342 3.658 7 O -0.463 6.463 8 C -0.124 4.124 9 C -0.103 4.103 10 C -0.103 4.103 11 C -0.139 4.139 12 C 0.054 3.946 13 F -0.126 7.126 14 C -0.138 4.138 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.276 4.276 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.182 1.182 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.151 0.849 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.260 0.740 35 H 0.186 0.814 36 H 0.200 0.800 37 H 0.184 0.816 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.827 31.662 -1.730 31.762 hybrid contribution -1.442 -1.107 0.546 1.898 sum -3.269 30.555 -1.183 30.753 Atomic orbital electron populations 1.22166 0.76415 1.04823 1.03859 1.47713 1.08674 1.04289 1.73622 1.21637 0.99366 0.85569 0.94572 1.21616 0.96517 0.84582 0.98794 1.45496 1.57623 1.23463 1.08831 1.18590 0.78719 0.84884 0.83596 1.90798 1.56374 1.66107 1.33047 1.19620 1.02816 0.95186 0.94781 1.21793 0.95963 0.95542 0.96962 1.21483 0.95642 0.94140 0.98986 1.21789 0.99810 1.01814 0.90449 1.17776 1.01088 0.93323 0.82428 1.91504 1.90580 1.83390 1.47114 1.21206 0.98375 0.94731 0.99441 1.20191 0.87308 0.85627 0.75108 1.90692 1.15620 1.87456 1.50100 1.23385 1.02735 0.94955 1.06496 1.85592 1.12754 0.97445 1.97038 1.23196 0.94643 0.92613 1.58838 0.89825 1.26140 0.97598 1.01733 0.93750 1.70190 1.14128 1.22453 1.48023 0.84949 0.77867 0.76282 0.78853 1.19135 1.20444 1.18186 0.90219 0.90999 0.88036 0.84872 0.90194 0.94880 0.90615 0.74033 0.81447 0.79983 0.81607 0.85631 0.87582 0.87063 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.24 127.77 1.31 2.32 16 2 N -0.61 -14.26 2.87 -846.75 -2.43 -16.69 16 3 C 0.11 1.95 5.52 86.38 0.48 2.43 16 4 C 0.11 2.35 6.00 86.38 0.52 2.87 16 5 N -0.70 -11.61 5.51 -465.96 -2.57 -14.18 16 6 C 0.55 12.72 7.77 86.79 0.67 13.40 16 7 O -0.58 -19.44 16.35 -3.89 -0.06 -19.51 16 8 C -0.12 -2.06 5.87 -20.09 -0.12 -2.18 16 9 C -0.08 -0.67 9.54 22.53 0.21 -0.45 16 10 C -0.09 -0.42 10.03 22.23 0.22 -0.20 16 11 C -0.12 -1.06 10.02 22.37 0.22 -0.83 16 12 C 0.07 1.18 7.29 22.34 0.16 1.35 16 13 F -0.15 -2.80 17.26 44.97 0.78 -2.03 16 14 C -0.12 -2.33 9.57 22.58 0.22 -2.11 16 15 C 0.53 19.15 7.69 87.66 0.67 19.83 16 16 O -0.56 -25.43 15.44 -3.04 -0.05 -25.48 16 17 C -0.12 -4.89 4.71 71.23 0.34 -4.55 16 18 S -0.16 -8.65 20.57 -56.49 -1.16 -9.82 16 19 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 23 Si 1.00 43.58 29.55 68.60 2.03 45.60 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 27 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 1.19 6.44 -2.39 -0.02 1.17 16 29 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.13 1.03 8.07 -2.39 -0.02 1.01 16 31 H 0.08 1.66 7.42 -2.39 -0.02 1.64 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.42 3.25 6.51 -92.71 -0.60 2.65 16 35 H 0.17 0.13 6.40 -2.91 -0.02 0.11 16 36 H 0.18 -0.50 8.06 -2.91 -0.02 -0.52 16 37 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 38 H 0.13 2.95 7.65 -2.91 -0.02 2.93 16 39 H 0.11 3.82 7.40 -2.39 -0.02 3.80 16 40 H 0.11 3.87 8.11 -2.40 -0.02 3.85 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -89.55 374.08 3.31 -86.24 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.47 Total: 9.22 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 6.02 Total: 2.59 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -4.71 Total: -86.82 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.11 Total: -44.99 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -89.55 3.31 -86.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527885051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.148 kcal (2) G-P(sol) polarization free energy of solvation -89.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds