Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.48863 * 2 1 4 4 C 1.53090 * 109.47671 * 120.03225 * 2 1 3 5 5 C 1.53176 * 109.15915 * 177.59287 * 4 2 1 6 6 H 1.09006 * 109.54752 * 62.88204 * 5 4 2 7 7 C 1.53005 * 109.54527 * 183.15111 * 5 4 2 8 8 S 1.81399 * 109.47438 * 184.55647 * 7 5 4 9 9 O 1.42104 * 110.53930 * 291.62268 * 8 7 5 10 10 O 1.42099 * 110.54035 * 68.37331 * 8 7 5 11 11 O 1.52196 * 104.44929 * 179.97438 * 8 7 5 12 12 C 1.35907 * 113.99940 * 74.99815 * 11 8 7 13 13 C 1.39154 * 119.93001 * 89.99823 * 12 11 8 14 14 C 1.38522 * 120.44106 * 180.02562 * 13 12 11 15 15 C 1.37671 * 120.30735 * 0.02562 * 14 13 12 16 16 C 1.40722 * 119.85344 * 359.97286 * 15 14 13 17 17 C 1.41407 * 120.21885 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00224 * 155.00348 * 17 16 15 19 19 C 1.39939 * 119.99805 * 335.00179 * 17 16 15 20 20 N 1.30829 * 119.99767 * 342.53597 * 19 17 16 21 21 Si 1.86797 * 120.00207 * 162.53683 * 19 17 16 22 22 H 1.48494 * 109.47248 * 89.99736 * 21 19 17 23 23 H 1.48499 * 109.47271 * 210.00028 * 21 19 17 24 24 H 1.48503 * 109.46837 * 329.99746 * 21 19 17 25 25 C 1.38098 * 119.93194 * 269.72576 * 12 11 8 26 26 C 1.53179 * 109.03984 * 303.01754 * 5 4 2 27 27 C 1.53096 * 109.16143 * 56.97980 * 26 5 4 28 28 O 1.42896 * 109.47874 * 239.97586 * 2 1 3 29 29 H 1.08995 * 109.46835 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47308 * 300.03189 * 1 2 3 31 31 H 1.08998 * 109.46826 * 60.02424 * 1 2 3 32 32 H 1.08998 * 109.52494 * 57.68525 * 4 2 1 33 33 H 1.09007 * 109.52069 * 297.49234 * 4 2 1 34 34 H 1.09003 * 109.46573 * 304.55503 * 7 5 4 35 35 H 1.09000 * 109.46833 * 64.55179 * 7 5 4 36 36 H 1.07997 * 119.77786 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.84608 * 179.97438 * 14 13 12 38 38 H 1.07999 * 120.07402 * 180.02562 * 15 14 13 39 39 H 0.97006 * 119.99899 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.15397 * 0.02562 * 25 12 11 41 41 H 1.08999 * 109.51820 * 297.07992 * 26 5 4 42 42 H 1.09000 * 109.57608 * 176.91841 * 26 5 4 43 43 H 1.08995 * 109.47791 * 182.41321 * 27 26 5 44 44 H 1.09001 * 109.47476 * 62.37914 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5710 -0.7709 1.2121 6 1 3.9689 0.2435 1.2408 7 6 4.0877 -1.5596 2.4172 8 16 5.9006 -1.5021 2.4453 9 8 6.4398 -2.2386 1.3562 10 8 6.3532 -0.1868 2.7360 11 8 6.2872 -2.3117 3.6747 12 6 6.1589 -3.6552 3.5145 13 6 7.2302 -4.4027 3.0349 14 6 7.1109 -5.7725 2.8671 15 6 5.9295 -6.4097 3.1729 16 6 4.8380 -5.6661 3.6589 17 6 3.6211 -6.3127 3.9760 18 1 2.9468 -5.8720 4.6953 19 6 3.2905 -7.5238 3.3577 20 7 3.9070 -7.8891 2.2631 21 14 1.9689 -8.6188 4.0951 22 1 0.6477 -8.2528 3.5246 23 1 2.2687 -10.0383 3.7785 24 1 1.9398 -8.4357 5.5685 25 6 4.9675 -4.2766 3.8334 26 6 4.0177 -1.4601 -0.0809 27 6 3.4308 -0.7092 -1.2791 28 8 2.0066 -0.6741 -1.1664 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5135 -0.8902 32 1 1.6442 -1.7375 1.2709 33 1 1.7148 -0.1843 2.1399 34 1 3.6960 -1.1196 3.3343 35 1 3.7582 -2.5958 2.3416 36 1 8.1608 -3.9115 2.7919 37 1 7.9484 -6.3432 2.4938 38 1 5.8408 -7.4779 3.0410 39 1 3.6776 -8.7285 1.8343 40 1 4.1372 -3.6973 4.2094 41 1 3.6613 -2.4901 -0.0864 42 1 5.1059 -1.4507 -0.1427 43 1 3.7100 -1.2202 -2.2005 44 1 3.8194 0.3090 -1.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001561466172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -152.386521 kcal Electronic energy + Delta-G solvation = -28526.031742 eV Core-core repulsion = 24535.255438 eV Total energy + Delta-G solvation = -3990.776303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08290 -39.65109 -37.01011 -36.77031 -35.74780 -35.04898 -33.73115 -32.86982 -30.26670 -29.15616 -28.89672 -27.14780 -25.59797 -23.63057 -22.44972 -21.91042 -21.17157 -20.31417 -19.71901 -18.15518 -17.41032 -16.81510 -16.41546 -16.22664 -15.86231 -15.58577 -15.18490 -14.90488 -14.74850 -14.54223 -14.21483 -13.93556 -13.26104 -13.05733 -12.69670 -12.61193 -12.51301 -12.46015 -12.33790 -12.29138 -12.06183 -11.82978 -11.72323 -11.65146 -11.30265 -11.23836 -11.19775 -11.17740 -11.03083 -10.81730 -10.67734 -10.44208 -10.29725 -10.12515 -9.72055 -9.48368 -9.38546 -7.87350 -7.68765 -7.02590 -4.66597 0.52980 2.32440 2.52509 2.79853 2.94998 2.96685 3.02981 3.69008 3.74987 3.94229 4.29863 4.35706 4.43397 4.56377 4.65959 4.84621 5.05343 5.10528 5.11727 5.28467 5.30150 5.39440 5.44862 5.53197 5.59865 5.69547 5.76495 5.83332 5.91300 5.92622 5.99875 6.06280 6.10833 6.13485 6.30196 6.55297 6.65528 6.77176 6.94215 7.17514 7.22396 7.35893 7.63851 7.69879 7.89642 8.28501 8.56721 8.58249 9.92526 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.004483 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.159725 B = 6244.076252 C = 8192.064450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.057 0.943 4 C -0.138 4.138 5 C -0.072 4.072 6 H 0.081 0.919 7 C -0.650 4.650 8 S 2.596 3.404 9 O -0.946 6.946 10 O -0.954 6.954 11 O -0.667 6.667 12 C 0.078 3.922 13 C -0.203 4.203 14 C -0.093 4.093 15 C -0.142 4.142 16 C 0.121 3.879 17 C -0.458 4.458 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.785 5.785 21 Si 0.911 3.089 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.241 4.241 26 C -0.183 4.183 27 C 0.066 3.934 28 O -0.380 6.380 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.286 0.714 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 9.106 -3.178 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.075 0.925 4 C -0.177 4.177 5 C -0.092 4.092 6 H 0.099 0.901 7 C -0.776 4.776 8 S 2.692 3.308 9 O -0.944 6.944 10 O -0.952 6.952 11 O -0.627 6.627 12 C 0.038 3.962 13 C -0.224 4.224 14 C -0.112 4.112 15 C -0.162 4.162 16 C 0.118 3.882 17 C -0.486 4.486 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.409 5.409 21 Si 0.735 3.265 22 H -0.193 1.193 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.263 4.263 26 C -0.221 4.221 27 C -0.011 4.011 28 O -0.299 6.299 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.989 9.125 -3.496 10.554 hybrid contribution -1.014 -0.380 0.649 1.262 sum -5.002 8.744 -2.848 10.469 Atomic orbital electron populations 1.21762 0.93024 1.03156 1.02246 1.22117 0.95130 0.94911 0.85224 0.92462 1.22265 0.93984 1.02931 0.98485 1.20849 0.97653 0.98459 0.92192 0.90070 1.30938 1.28651 1.11379 1.06624 1.05421 0.77319 0.74247 0.73770 1.93628 1.75183 1.70399 1.55223 1.93563 1.79194 1.38827 1.83629 1.85580 1.87069 1.27780 1.62276 1.17965 0.96876 0.74507 1.06851 1.20455 0.97569 0.94589 1.09834 1.20617 0.97697 0.92965 0.99926 1.21588 0.91408 1.00484 1.02689 1.17365 0.93094 0.89099 0.88678 1.19568 1.03343 1.04188 1.21516 0.89883 1.25948 0.97272 0.97721 0.93368 1.69790 1.36788 1.21337 1.12967 0.86246 0.80462 0.78971 0.80806 1.19292 1.19839 1.18261 1.21076 0.95676 0.95762 1.13786 1.22734 1.03084 1.01996 0.94293 1.22538 0.80712 0.99386 0.98427 1.87929 1.21151 1.78015 1.42788 0.91586 0.91125 0.91920 0.89995 0.90529 0.84860 0.83299 0.87690 0.87654 0.85444 0.90311 0.87330 0.89127 0.88937 0.88243 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.56 37.16 0.36 -0.99 16 2 C 0.08 0.94 3.26 -26.68 -0.09 0.85 16 3 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.14 -1.62 4.71 -26.59 -0.13 -1.75 16 5 C -0.07 -0.96 2.28 -90.43 -0.21 -1.16 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.65 -9.57 4.91 37.16 0.18 -9.39 16 8 S 2.60 47.38 4.82 -107.50 -0.52 46.86 16 9 O -0.95 -19.21 14.08 -67.03 -0.94 -20.15 16 10 O -0.95 -18.81 18.09 -67.04 -1.21 -20.02 16 11 O -0.67 -13.56 10.04 -51.77 -0.52 -14.08 16 12 C 0.08 1.74 4.79 -39.29 -0.19 1.55 16 13 C -0.20 -4.52 9.05 -39.14 -0.35 -4.87 16 14 C -0.09 -2.05 10.02 -39.68 -0.40 -2.45 16 15 C -0.14 -3.36 8.69 -38.85 -0.34 -3.70 16 16 C 0.12 2.92 5.57 -106.84 -0.59 2.33 16 17 C -0.46 -10.93 9.05 -37.74 -0.34 -11.27 16 18 H 0.08 1.88 7.90 -52.49 -0.41 1.47 16 19 C 0.08 1.74 5.14 -17.34 -0.09 1.65 16 20 N -0.78 -18.47 10.97 55.55 0.61 -17.86 16 21 Si 0.91 17.03 29.59 -169.99 -5.03 12.00 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.24 -5.40 8.20 -38.72 -0.32 -5.72 16 26 C -0.18 -2.57 5.00 -26.59 -0.13 -2.70 16 27 C 0.07 0.80 6.84 37.21 0.25 1.05 16 28 O -0.38 -5.00 10.41 -35.23 -0.37 -5.37 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.15 2.34 6.62 -51.92 -0.34 1.99 16 36 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 38 H 0.13 3.06 6.18 -52.49 -0.32 2.73 16 39 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 40 H 0.11 2.18 7.51 -52.49 -0.39 1.78 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.09 1.35 5.84 -51.93 -0.30 1.05 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -28.85 364.43 -11.28 -40.13 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.41 Total: 9.57 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: -2.38 Total: -36.57 kcal Atomic # 7 Polarization: -18.47 SS G_CDS: 0.61 Total: -17.86 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -3.04 Total: -59.62 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 47.38 SS G_CDS: -0.52 Total: 46.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.85 -11.28 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561466172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.254 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds