Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.48863 * 2 1 4 4 C 1.53090 * 109.47671 * 120.03225 * 2 1 3 5 5 C 1.53176 * 109.15915 * 177.59287 * 4 2 1 6 6 H 1.09006 * 109.54752 * 62.88204 * 5 4 2 7 7 C 1.53005 * 109.54527 * 183.15111 * 5 4 2 8 8 S 1.81399 * 109.47438 * 184.55647 * 7 5 4 9 9 O 1.42104 * 110.53930 * 291.62268 * 8 7 5 10 10 O 1.42099 * 110.54035 * 68.37331 * 8 7 5 11 11 O 1.52196 * 104.44929 * 179.97438 * 8 7 5 12 12 C 1.35907 * 113.99940 * 74.99815 * 11 8 7 13 13 C 1.39154 * 119.93001 * 89.99823 * 12 11 8 14 14 C 1.38522 * 120.44106 * 180.02562 * 13 12 11 15 15 C 1.37671 * 120.30735 * 0.02562 * 14 13 12 16 16 C 1.40722 * 119.85344 * 359.97286 * 15 14 13 17 17 C 1.41407 * 120.21885 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00224 * 155.00348 * 17 16 15 19 19 C 1.39939 * 119.99805 * 335.00179 * 17 16 15 20 20 N 1.30829 * 119.99767 * 342.53597 * 19 17 16 21 21 Si 1.86797 * 120.00207 * 162.53683 * 19 17 16 22 22 H 1.48494 * 109.47248 * 89.99736 * 21 19 17 23 23 H 1.48499 * 109.47271 * 210.00028 * 21 19 17 24 24 H 1.48503 * 109.46837 * 329.99746 * 21 19 17 25 25 C 1.38098 * 119.93194 * 269.72576 * 12 11 8 26 26 C 1.53179 * 109.03984 * 303.01754 * 5 4 2 27 27 C 1.53096 * 109.16143 * 56.97980 * 26 5 4 28 28 O 1.42896 * 109.47874 * 239.97586 * 2 1 3 29 29 H 1.08995 * 109.46835 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47308 * 300.03189 * 1 2 3 31 31 H 1.08998 * 109.46826 * 60.02424 * 1 2 3 32 32 H 1.08998 * 109.52494 * 57.68525 * 4 2 1 33 33 H 1.09007 * 109.52069 * 297.49234 * 4 2 1 34 34 H 1.09003 * 109.46573 * 304.55503 * 7 5 4 35 35 H 1.09000 * 109.46833 * 64.55179 * 7 5 4 36 36 H 1.07997 * 119.77786 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.84608 * 179.97438 * 14 13 12 38 38 H 1.07999 * 120.07402 * 180.02562 * 15 14 13 39 39 H 0.97006 * 119.99899 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.15397 * 0.02562 * 25 12 11 41 41 H 1.08999 * 109.51820 * 297.07992 * 26 5 4 42 42 H 1.09000 * 109.57608 * 176.91841 * 26 5 4 43 43 H 1.08995 * 109.47791 * 182.41321 * 27 26 5 44 44 H 1.09001 * 109.47476 * 62.37914 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5710 -0.7709 1.2121 6 1 3.9689 0.2435 1.2408 7 6 4.0877 -1.5596 2.4172 8 16 5.9006 -1.5021 2.4453 9 8 6.4398 -2.2386 1.3562 10 8 6.3532 -0.1868 2.7360 11 8 6.2872 -2.3117 3.6747 12 6 6.1589 -3.6552 3.5145 13 6 7.2302 -4.4027 3.0349 14 6 7.1109 -5.7725 2.8671 15 6 5.9295 -6.4097 3.1729 16 6 4.8380 -5.6661 3.6589 17 6 3.6211 -6.3127 3.9760 18 1 2.9468 -5.8720 4.6953 19 6 3.2905 -7.5238 3.3577 20 7 3.9070 -7.8891 2.2631 21 14 1.9689 -8.6188 4.0951 22 1 0.6477 -8.2528 3.5246 23 1 2.2687 -10.0383 3.7785 24 1 1.9398 -8.4357 5.5685 25 6 4.9675 -4.2766 3.8334 26 6 4.0177 -1.4601 -0.0809 27 6 3.4308 -0.7092 -1.2791 28 8 2.0066 -0.6741 -1.1664 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5135 -0.8902 32 1 1.6442 -1.7375 1.2709 33 1 1.7148 -0.1843 2.1399 34 1 3.6960 -1.1196 3.3343 35 1 3.7582 -2.5958 2.3416 36 1 8.1608 -3.9115 2.7919 37 1 7.9484 -6.3432 2.4938 38 1 5.8408 -7.4779 3.0410 39 1 3.6776 -8.7285 1.8343 40 1 4.1372 -3.6973 4.2094 41 1 3.6613 -2.4901 -0.0864 42 1 5.1059 -1.4507 -0.1427 43 1 3.7100 -1.2202 -2.2005 44 1 3.8194 0.3090 -1.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561466172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -168.692273 kcal Electronic energy + Delta-G solvation = -28526.738812 eV Core-core repulsion = 24535.255438 eV Total energy + Delta-G solvation = -3991.483374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72119 -40.61230 -38.71289 -38.32241 -37.26721 -36.12909 -35.46786 -33.72843 -32.01965 -30.73761 -30.16665 -28.08305 -27.35029 -24.71405 -24.02652 -23.13087 -22.66160 -21.46907 -21.20027 -19.73996 -18.94549 -18.27401 -17.96283 -17.34501 -17.21415 -16.85634 -16.65187 -16.31610 -16.15256 -15.77920 -15.46357 -15.06609 -14.87650 -14.37610 -14.21385 -14.08180 -13.94062 -13.66792 -13.50565 -13.39107 -13.29584 -13.24270 -13.12127 -12.91935 -12.82632 -12.75399 -12.56581 -12.37419 -12.28381 -12.16486 -12.04030 -11.94297 -11.45822 -11.42782 -11.18379 -11.08718 -10.46428 -9.63782 -9.46471 -8.73763 -6.47566 -0.93399 0.62552 0.80222 1.20288 1.42232 1.48879 1.56510 2.19083 2.52099 2.58670 2.83006 2.98791 3.29406 3.42721 3.51851 3.65300 3.90919 3.98051 4.15366 4.18999 4.21901 4.30573 4.36445 4.38461 4.44263 4.52005 4.64514 4.72465 4.73241 4.83370 4.84547 4.87982 5.00016 5.02173 5.03227 5.08973 5.20692 5.27187 5.33024 5.48839 5.59889 5.86446 5.92141 6.12174 6.28548 6.50230 6.79175 6.79839 8.23918 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.004483 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.159725 B = 6244.076252 C = 8192.064450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.075 0.925 4 C -0.136 4.136 5 C -0.077 4.077 6 H 0.100 0.900 7 C -0.629 4.629 8 S 2.596 3.404 9 O -0.972 6.972 10 O -0.969 6.969 11 O -0.675 6.675 12 C 0.079 3.921 13 C -0.223 4.223 14 C -0.091 4.091 15 C -0.166 4.166 16 C 0.096 3.904 17 C -0.484 4.484 18 H 0.089 0.911 19 C 0.040 3.960 20 N -0.813 5.813 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.256 1.256 25 C -0.247 4.247 26 C -0.189 4.189 27 C 0.066 3.934 28 O -0.398 6.398 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.140 0.860 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.294 0.706 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 10.126 -2.775 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.019 3.981 3 H 0.093 0.907 4 C -0.174 4.174 5 C -0.097 4.097 6 H 0.118 0.882 7 C -0.759 4.759 8 S 2.696 3.304 9 O -0.971 6.971 10 O -0.967 6.967 11 O -0.635 6.635 12 C 0.039 3.961 13 C -0.245 4.245 14 C -0.109 4.109 15 C -0.186 4.186 16 C 0.093 3.907 17 C -0.512 4.512 18 H 0.107 0.893 19 C -0.177 4.177 20 N -0.438 5.438 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.180 1.180 25 C -0.268 4.268 26 C -0.227 4.227 27 C -0.011 4.011 28 O -0.317 6.317 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.124 0.876 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.695 10.145 -3.091 12.037 hybrid contribution -0.463 -0.601 0.481 0.898 sum -6.158 9.543 -2.610 11.654 Atomic orbital electron populations 1.21785 0.91734 1.02857 1.03591 1.22354 0.96217 0.95395 0.84115 0.90741 1.22287 0.92318 1.02711 1.00116 1.21013 0.99068 0.98893 0.90705 0.88168 1.30760 1.24202 1.11692 1.09261 1.05274 0.78990 0.73390 0.72755 1.93599 1.77017 1.70763 1.55684 1.93540 1.80617 1.39007 1.83578 1.85513 1.87858 1.26962 1.63176 1.18018 0.96741 0.75277 1.06062 1.20730 0.98296 0.94954 1.10478 1.20881 0.97965 0.93153 0.98922 1.21598 0.92274 1.00227 1.04534 1.17715 0.93646 0.90078 0.89212 1.19864 1.03630 1.05444 1.22253 0.89333 1.26758 0.99254 0.98432 0.93269 1.69835 1.38061 1.22017 1.13883 0.85195 0.77638 0.77111 0.79852 1.18715 1.19168 1.18009 1.21260 0.96434 0.95457 1.13678 1.22751 1.02446 1.01381 0.96087 1.22602 0.80468 1.00284 0.97740 1.87917 1.21449 1.78539 1.43815 0.92701 0.88987 0.91408 0.91445 0.88030 0.81656 0.84142 0.86667 0.85124 0.86357 0.89552 0.85385 0.91247 0.90073 0.87580 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.56 71.98 0.69 -1.61 16 2 C 0.08 1.51 3.26 30.63 0.10 1.61 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.14 -2.85 4.71 30.68 0.14 -2.70 16 5 C -0.08 -1.90 2.28 -10.67 -0.02 -1.93 16 6 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 7 C -0.63 -17.54 4.91 71.98 0.35 -17.19 16 8 S 2.60 93.47 4.82 -56.49 -0.27 93.20 16 9 O -0.97 -39.99 14.08 -118.57 -1.67 -41.66 16 10 O -0.97 -37.34 18.09 -118.57 -2.15 -39.48 16 11 O -0.67 -27.26 10.04 -61.60 -0.62 -27.88 16 12 C 0.08 3.53 4.79 22.46 0.11 3.64 16 13 C -0.22 -10.03 9.05 22.56 0.20 -9.83 16 14 C -0.09 -4.04 10.02 22.20 0.22 -3.81 16 15 C -0.17 -8.08 8.69 22.74 0.20 -7.88 16 16 C 0.10 4.75 5.57 -21.30 -0.12 4.63 16 17 C -0.48 -23.25 9.05 23.46 0.21 -23.04 16 18 H 0.09 4.01 7.90 -2.91 -0.02 3.98 16 19 C 0.04 1.82 5.14 85.25 0.44 2.25 16 20 N -0.81 -38.66 10.97 21.83 0.24 -38.42 16 21 Si 0.98 34.32 29.59 68.60 2.03 36.35 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 23 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 24 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 25 C -0.25 -11.09 8.20 22.82 0.19 -10.91 16 26 C -0.19 -5.22 5.00 30.69 0.15 -5.07 16 27 C 0.07 1.51 6.84 72.01 0.49 2.00 16 28 O -0.40 -9.88 10.41 -148.98 -1.55 -11.43 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 34 H 0.17 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.14 4.32 6.62 -2.39 -0.02 4.30 16 36 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 38 H 0.12 5.86 6.18 -2.91 -0.02 5.84 16 39 H 0.29 12.57 8.30 -92.70 -0.77 11.80 16 40 H 0.13 5.05 7.51 -2.91 -0.02 5.03 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.08 2.40 5.84 -2.39 -0.01 2.39 16 43 H 0.11 2.22 8.14 -2.39 -0.02 2.21 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.29 364.43 0.37 -61.91 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 1.00 Total: 37.25 kcal Atomic # 6 Polarization: -73.19 SS G_CDS: 3.36 Total: -69.83 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.24 Total: -38.42 kcal Atomic # 8 Polarization: -114.47 SS G_CDS: -5.98 Total: -120.46 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Atomic # 16 Polarization: 93.47 SS G_CDS: -0.27 Total: 93.20 kcal Total: -62.29 0.37 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561466172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.778 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds