Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 108.57837 * 2 1 4 4 O 1.42098 * 108.58441 * 228.96723 * 2 1 3 5 5 C 1.81408 * 101.92145 * 114.48009 * 2 1 3 6 6 C 1.50697 * 109.47026 * 180.02562 * 5 2 1 7 7 O 1.21275 * 120.00403 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99917 * 180.02562 * 6 5 2 9 9 C 1.46494 * 120.00318 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47205 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.51911 * 54.92363 * 10 9 8 12 12 C 1.53190 * 109.50110 * 294.84125 * 10 9 8 13 13 N 1.46919 * 108.77493 * 185.41168 * 12 10 9 14 14 C 1.36940 * 120.63335 * 233.62872 * 13 12 10 15 15 H 1.07996 * 119.99460 * 27.67797 * 14 13 12 16 16 C 1.38807 * 120.00099 * 207.68217 * 14 13 12 17 17 N 1.31616 * 120.00496 * 17.34698 * 16 14 13 18 18 Si 1.86806 * 119.99628 * 197.34953 * 16 14 13 19 19 H 1.48498 * 109.47259 * 60.00109 * 18 16 14 20 20 H 1.48504 * 109.46678 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47294 * 299.99789 * 18 16 14 22 22 C 1.46927 * 118.73885 * 53.61102 * 13 12 10 23 23 C 1.53188 * 108.76549 * 306.38057 * 22 13 12 24 24 C 1.53041 * 109.49270 * 175.00177 * 10 9 8 25 25 F 1.39901 * 109.46248 * 301.33550 * 24 10 9 26 26 F 1.39897 * 109.46158 * 61.31879 * 24 10 9 27 27 H 1.08994 * 109.47524 * 305.51954 * 1 2 3 28 28 H 1.09000 * 109.46835 * 65.51906 * 1 2 3 29 29 H 1.09001 * 109.46706 * 185.51337 * 1 2 3 30 30 H 1.08999 * 109.46745 * 60.00386 * 5 2 1 31 31 H 1.09000 * 109.46851 * 300.00451 * 5 2 1 32 32 H 0.97004 * 119.99597 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.46815 * 60.00350 * 9 8 6 34 34 H 1.08999 * 109.47235 * 300.00849 * 9 8 6 35 35 H 1.09002 * 109.58686 * 305.20511 * 12 10 9 36 36 H 1.09003 * 109.58725 * 65.62310 * 12 10 9 37 37 H 0.96997 * 119.99996 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.58660 * 66.17713 * 22 13 12 39 39 H 1.09005 * 109.58798 * 186.59970 * 22 13 12 40 40 H 1.08997 * 109.51019 * 294.69814 * 23 22 13 41 41 H 1.09003 * 109.48558 * 174.60093 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2669 -0.8842 -1.0160 5 6 2.1887 -0.7355 1.6154 6 6 3.6826 -0.8170 1.7958 7 8 4.4218 -0.4177 0.9212 8 7 4.1973 -1.3335 2.9293 9 6 5.6496 -1.4132 3.1046 10 6 5.9656 -2.0335 4.4671 11 1 5.4631 -2.9969 4.5541 12 6 5.4776 -1.1000 5.5794 13 7 5.9031 -1.6459 6.8754 14 6 4.9923 -1.8595 7.8755 15 1 3.9607 -2.0655 7.6313 16 6 5.3951 -1.8111 9.2030 17 7 6.5353 -1.2375 9.5243 18 14 4.3187 -2.5601 10.5334 19 1 4.1378 -4.0095 10.2661 20 1 4.9687 -2.3786 11.8563 21 1 2.9946 -1.8880 10.5355 22 6 7.3243 -1.9587 7.0779 23 6 7.7913 -2.8826 5.9488 24 6 7.4773 -2.2319 4.5996 25 9 7.9312 -3.0587 3.5665 26 9 8.1189 -0.9913 4.5201 27 1 -0.3634 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.7611 -1.7368 1.6667 31 1 1.7609 -0.1168 2.4043 32 1 3.6061 -1.6532 3.6288 33 1 6.0772 -0.4118 3.0537 34 1 6.0774 -2.0315 2.3154 35 1 5.9097 -0.1090 5.4406 36 1 4.3900 -1.0339 5.5501 37 1 6.8165 -1.2034 10.4520 38 1 7.9071 -1.0377 7.0614 39 1 7.4552 -2.4591 8.0374 40 1 7.2716 -3.8379 6.0217 41 1 8.8659 -3.0452 6.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569738006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = -181.555000 kcal Electronic energy + Delta-G solvation = -28535.953085 eV Core-core repulsion = 24021.975163 eV Total energy + Delta-G solvation = -4513.977922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -48.57638 -46.52768 -39.96960 -37.48863 -37.19736 -36.20448 -35.20057 -32.88682 -31.61658 -30.51841 -30.19081 -29.58453 -25.68171 -25.17285 -22.60111 -21.65049 -20.97288 -19.64835 -19.10461 -17.96410 -17.25787 -16.96159 -16.83744 -16.61814 -16.32360 -15.88849 -15.61303 -15.48486 -15.13197 -14.95024 -14.37712 -13.94253 -13.66883 -13.61994 -13.57727 -13.37592 -13.30982 -13.15102 -12.84259 -12.68053 -12.28111 -12.25089 -12.18419 -11.75842 -11.69921 -11.62337 -11.44760 -11.30034 -11.11971 -10.88337 -10.70557 -10.62661 -10.42915 -10.13635 -10.00517 -9.74043 -9.24445 -8.67616 -6.97513 -6.00281 -3.45284 -0.43016 2.25965 2.41176 2.72867 3.24885 3.31781 3.32810 3.53084 3.68125 4.09853 4.27481 4.29224 4.31352 4.37704 4.54687 4.60783 4.69458 4.77925 4.82693 5.12894 5.20640 5.21202 5.34129 5.45084 5.55634 5.82606 5.90816 6.08265 6.17172 6.20748 6.23963 6.35926 6.60750 7.04309 7.15991 7.39194 7.57378 7.85234 8.19747 8.95706 9.58366 10.13548 11.08792 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.003061 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.452620 B = 9144.620837 C =10691.992164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.457 3.543 3 O -0.920 6.920 4 O -0.923 6.923 5 C -0.661 4.661 6 C 0.540 3.460 7 O -0.530 6.530 8 N -0.709 5.709 9 C 0.120 3.880 10 C -0.156 4.156 11 H 0.103 0.897 12 C 0.152 3.848 13 N -0.590 5.590 14 C -0.265 4.265 15 H 0.069 0.931 16 C 0.008 3.992 17 N -0.898 5.898 18 Si 0.906 3.094 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.282 1.282 22 C 0.169 3.831 23 C -0.178 4.178 24 C 0.300 3.700 25 F -0.213 7.213 26 F -0.198 7.198 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.408 0.592 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.258 0.742 38 H 0.033 0.967 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 -1.993 -12.740 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.633 3.367 3 O -0.918 6.918 4 O -0.920 6.920 5 C -0.788 4.788 6 C 0.324 3.676 7 O -0.407 6.407 8 N -0.360 5.360 9 C -0.004 4.004 10 C -0.178 4.178 11 H 0.121 0.879 12 C 0.025 3.975 13 N -0.312 5.312 14 C -0.394 4.394 15 H 0.086 0.914 16 C -0.192 4.192 17 N -0.541 5.541 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.208 1.208 22 C 0.043 3.957 23 C -0.218 4.218 24 C 0.264 3.736 25 F -0.194 7.194 26 F -0.179 7.179 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.243 0.757 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.632 -1.376 -13.797 16.883 hybrid contribution -1.346 -0.886 1.750 2.379 sum -10.978 -2.262 -12.046 16.454 Atomic orbital electron populations 1.30398 1.27062 1.11667 1.12079 1.07126 0.77467 0.75843 0.76235 1.93607 1.78680 1.34054 1.85414 1.93598 1.78742 1.67247 1.52377 1.30895 1.03060 1.16581 1.28257 1.19076 0.87540 0.78143 0.82884 1.90877 1.60646 1.47868 1.41331 1.45787 1.08576 1.62755 1.18928 1.21470 0.79598 1.02628 0.96669 1.22994 0.94001 1.03937 0.96848 0.87882 1.20924 0.98283 0.93376 0.84964 1.44081 1.04472 1.72582 1.10032 1.19090 0.91766 1.43453 0.85121 0.91378 1.25083 0.97629 0.98878 0.97570 1.70005 1.22886 1.43430 1.17757 0.86328 0.79813 0.79356 0.80976 1.20871 1.21487 1.20767 1.20858 0.83955 0.95303 0.95547 1.23273 1.02618 1.02212 0.93736 1.21012 0.90019 0.75530 0.87062 1.92963 1.90937 1.72846 1.62624 1.92973 1.83833 1.44260 1.96858 0.85156 0.84935 0.85246 0.82205 0.82028 0.75677 0.90080 0.90450 0.94801 0.91660 0.93179 0.94884 0.88073 0.89562 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.20 10.62 101.05 1.07 -1.12 16 2 S 2.46 21.13 4.60 -107.50 -0.49 20.63 16 3 O -0.92 -12.13 17.94 -59.55 -1.07 -13.20 16 4 O -0.92 -11.89 17.95 -59.51 -1.07 -12.96 16 5 C -0.66 -4.43 6.29 36.00 0.23 -4.21 16 6 C 0.54 6.85 7.85 -10.99 -0.09 6.76 16 7 O -0.53 -9.15 15.62 2.56 0.04 -9.11 16 8 N -0.71 -8.45 5.33 -60.30 -0.32 -8.77 16 9 C 0.12 1.75 4.83 -4.04 -0.02 1.73 16 10 C -0.16 -2.43 2.03 -90.50 -0.18 -2.62 16 11 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 12 C 0.15 2.77 5.40 -3.72 -0.02 2.75 16 13 N -0.59 -13.21 2.99 -172.32 -0.52 -13.73 16 14 C -0.27 -6.52 9.58 -15.06 -0.14 -6.66 16 15 H 0.07 1.60 7.89 -52.49 -0.41 1.18 16 16 C 0.01 0.21 4.91 -17.43 -0.09 0.12 16 17 N -0.90 -24.26 11.19 55.49 0.62 -23.64 16 18 Si 0.91 19.94 29.59 -169.99 -5.03 14.91 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.17 3.71 5.11 -3.71 -0.02 3.69 16 23 C -0.18 -3.17 5.62 -26.61 -0.15 -3.32 16 24 C 0.30 5.18 1.63 -26.68 -0.04 5.13 16 25 F -0.21 -3.60 16.41 2.25 0.04 -3.56 16 26 F -0.20 -3.74 15.73 2.25 0.04 -3.70 16 27 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.13 0.16 8.14 -51.92 -0.42 -0.27 16 30 H 0.16 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.16 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.41 3.76 7.71 -40.82 -0.31 3.44 16 33 H 0.08 1.29 7.97 -51.92 -0.41 0.87 16 34 H 0.08 1.16 7.63 -51.93 -0.40 0.77 16 35 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 36 H 0.06 1.07 7.14 -51.93 -0.37 0.70 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.10 2.45 6.04 -51.93 -0.31 2.14 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -36.90 356.21 -7.41 -44.32 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.56 Total: 1.19 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 0.55 Total: 2.26 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.22 Total: -46.14 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.10 Total: -35.26 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.07 Total: -7.26 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 16 Polarization: 21.13 SS G_CDS: -0.49 Total: 20.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.90 -7.41 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569738006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.239 kcal (2) G-P(sol) polarization free energy of solvation -36.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds