Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 108.57837 * 2 1 4 4 O 1.42098 * 108.58441 * 228.96723 * 2 1 3 5 5 C 1.81408 * 101.92145 * 114.48009 * 2 1 3 6 6 C 1.50697 * 109.47026 * 180.02562 * 5 2 1 7 7 O 1.21275 * 120.00403 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99917 * 180.02562 * 6 5 2 9 9 C 1.46494 * 120.00318 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47205 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.51911 * 54.92363 * 10 9 8 12 12 C 1.53190 * 109.50110 * 294.84125 * 10 9 8 13 13 N 1.46919 * 108.77493 * 185.41168 * 12 10 9 14 14 C 1.36940 * 120.63335 * 233.62872 * 13 12 10 15 15 H 1.07996 * 119.99460 * 27.67797 * 14 13 12 16 16 C 1.38807 * 120.00099 * 207.68217 * 14 13 12 17 17 N 1.31616 * 120.00496 * 17.34698 * 16 14 13 18 18 Si 1.86806 * 119.99628 * 197.34953 * 16 14 13 19 19 H 1.48498 * 109.47259 * 60.00109 * 18 16 14 20 20 H 1.48504 * 109.46678 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47294 * 299.99789 * 18 16 14 22 22 C 1.46927 * 118.73885 * 53.61102 * 13 12 10 23 23 C 1.53188 * 108.76549 * 306.38057 * 22 13 12 24 24 C 1.53041 * 109.49270 * 175.00177 * 10 9 8 25 25 F 1.39901 * 109.46248 * 301.33550 * 24 10 9 26 26 F 1.39897 * 109.46158 * 61.31879 * 24 10 9 27 27 H 1.08994 * 109.47524 * 305.51954 * 1 2 3 28 28 H 1.09000 * 109.46835 * 65.51906 * 1 2 3 29 29 H 1.09001 * 109.46706 * 185.51337 * 1 2 3 30 30 H 1.08999 * 109.46745 * 60.00386 * 5 2 1 31 31 H 1.09000 * 109.46851 * 300.00451 * 5 2 1 32 32 H 0.97004 * 119.99597 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.46815 * 60.00350 * 9 8 6 34 34 H 1.08999 * 109.47235 * 300.00849 * 9 8 6 35 35 H 1.09002 * 109.58686 * 305.20511 * 12 10 9 36 36 H 1.09003 * 109.58725 * 65.62310 * 12 10 9 37 37 H 0.96997 * 119.99996 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.58660 * 66.17713 * 22 13 12 39 39 H 1.09005 * 109.58798 * 186.59970 * 22 13 12 40 40 H 1.08997 * 109.51019 * 294.69814 * 23 22 13 41 41 H 1.09003 * 109.48558 * 174.60093 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2669 -0.8842 -1.0160 5 6 2.1887 -0.7355 1.6154 6 6 3.6826 -0.8170 1.7958 7 8 4.4218 -0.4177 0.9212 8 7 4.1973 -1.3335 2.9293 9 6 5.6496 -1.4132 3.1046 10 6 5.9656 -2.0335 4.4671 11 1 5.4631 -2.9969 4.5541 12 6 5.4776 -1.1000 5.5794 13 7 5.9031 -1.6459 6.8754 14 6 4.9923 -1.8595 7.8755 15 1 3.9607 -2.0655 7.6313 16 6 5.3951 -1.8111 9.2030 17 7 6.5353 -1.2375 9.5243 18 14 4.3187 -2.5601 10.5334 19 1 4.1378 -4.0095 10.2661 20 1 4.9687 -2.3786 11.8563 21 1 2.9946 -1.8880 10.5355 22 6 7.3243 -1.9587 7.0779 23 6 7.7913 -2.8826 5.9488 24 6 7.4773 -2.2319 4.5996 25 9 7.9312 -3.0587 3.5665 26 9 8.1189 -0.9913 4.5201 27 1 -0.3634 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.7611 -1.7368 1.6667 31 1 1.7609 -0.1168 2.4043 32 1 3.6061 -1.6532 3.6288 33 1 6.0772 -0.4118 3.0537 34 1 6.0774 -2.0315 2.3154 35 1 5.9097 -0.1090 5.4406 36 1 4.3900 -1.0339 5.5501 37 1 6.8165 -1.2034 10.4520 38 1 7.9071 -1.0377 7.0614 39 1 7.4552 -2.4591 8.0374 40 1 7.2716 -3.8379 6.0217 41 1 8.8659 -3.0452 6.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569738006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -211.610010 kcal Electronic energy + Delta-G solvation = -28537.256368 eV Core-core repulsion = 24021.975163 eV Total energy + Delta-G solvation = -4515.281205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.01132 -47.97071 -41.01411 -38.99936 -37.95916 -36.97138 -36.50955 -34.45864 -32.81254 -32.05575 -31.16907 -30.07408 -27.21626 -26.72363 -24.11580 -23.14959 -22.02725 -21.14564 -19.79480 -19.12881 -18.56164 -18.29744 -17.98322 -17.42262 -17.34818 -17.05839 -16.86617 -16.71737 -16.41562 -16.11108 -15.76556 -15.38884 -14.95990 -14.77526 -14.58793 -14.51457 -14.28778 -13.92344 -13.84877 -13.82512 -13.59842 -13.27228 -13.20523 -13.06081 -13.03820 -13.01409 -12.96877 -12.54958 -12.31928 -12.20223 -12.09611 -11.90588 -11.67180 -11.65134 -11.55133 -11.18846 -10.55703 -10.32985 -8.81116 -7.90065 -5.36989 -0.99785 1.33319 1.52547 1.55321 1.61319 1.81362 1.89715 2.50340 2.74533 2.94088 3.14592 3.15162 3.22854 3.27149 3.49406 3.51446 3.61653 3.88842 4.01184 4.05212 4.17118 4.23330 4.35970 4.37017 4.46883 4.54625 4.63819 4.75354 4.82699 4.87180 5.03945 5.05806 5.18483 5.29112 5.58701 5.66772 6.23322 6.34019 6.95888 7.08321 7.76535 8.29386 9.18099 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.003061 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.452620 B = 9144.620837 C =10691.992164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.436 3.564 3 O -0.986 6.986 4 O -0.984 6.984 5 C -0.645 4.645 6 C 0.526 3.474 7 O -0.586 6.586 8 N -0.699 5.699 9 C 0.128 3.872 10 C -0.138 4.138 11 H 0.125 0.875 12 C 0.153 3.847 13 N -0.605 5.605 14 C -0.265 4.265 15 H 0.085 0.915 16 C -0.047 4.047 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.303 1.303 21 H -0.273 1.273 22 C 0.176 3.824 23 C -0.168 4.168 24 C 0.296 3.704 25 F -0.208 7.208 26 F -0.211 7.211 27 H 0.162 0.838 28 H 0.140 0.860 29 H 0.164 0.836 30 H 0.209 0.791 31 H 0.205 0.795 32 H 0.424 0.576 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.014 0.986 36 H 0.089 0.911 37 H 0.251 0.749 38 H 0.002 0.998 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 -3.648 -12.683 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.621 3.379 3 O -0.983 6.983 4 O -0.981 6.981 5 C -0.773 4.773 6 C 0.312 3.688 7 O -0.467 6.467 8 N -0.352 5.352 9 C 0.003 3.997 10 C -0.159 4.159 11 H 0.143 0.857 12 C 0.026 3.974 13 N -0.327 5.327 14 C -0.395 4.395 15 H 0.102 0.898 16 C -0.243 4.243 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.200 1.200 20 H -0.229 1.229 21 H -0.198 1.198 22 C 0.050 3.950 23 C -0.207 4.207 24 C 0.260 3.740 25 F -0.189 7.189 26 F -0.192 7.192 27 H 0.180 0.820 28 H 0.158 0.842 29 H 0.182 0.818 30 H 0.226 0.774 31 H 0.222 0.778 32 H 0.263 0.737 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.032 0.968 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.346 -3.038 -13.774 19.418 hybrid contribution -0.248 -0.354 1.728 1.781 sum -13.594 -3.393 -12.046 18.477 Atomic orbital electron populations 1.30084 1.19020 1.14780 1.14008 1.07192 0.80368 0.74045 0.76345 1.93532 1.81628 1.36734 1.86414 1.93525 1.81603 1.67832 1.55116 1.30816 0.98601 1.20140 1.27755 1.20078 0.90037 0.76764 0.81922 1.90866 1.62741 1.49964 1.43122 1.45668 1.07506 1.62549 1.19456 1.21192 0.81555 1.01272 0.95718 1.22796 0.92751 1.04244 0.96130 0.85708 1.21007 0.99648 0.92820 0.83878 1.44317 1.04261 1.73112 1.11030 1.19559 0.92671 1.41658 0.85565 0.89779 1.25840 0.98876 0.99840 0.99745 1.70173 1.24914 1.45594 1.17481 0.85320 0.78309 0.78833 0.77800 1.20043 1.22938 1.19840 1.20571 0.83970 0.94489 0.95955 1.23096 1.03611 1.01636 0.92376 1.21124 0.91031 0.75010 0.86846 1.92971 1.90994 1.72610 1.62280 1.92955 1.84218 1.45168 1.96895 0.82017 0.84173 0.81806 0.77362 0.77779 0.73732 0.92099 0.90895 0.96805 0.89242 0.94012 0.97959 0.90692 0.88035 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.08 10.62 113.37 1.20 0.12 16 2 S 2.44 38.78 4.60 -56.49 -0.26 38.52 16 3 O -0.99 -26.75 17.94 -125.73 -2.26 -29.00 16 4 O -0.98 -25.79 17.95 -125.77 -2.26 -28.05 16 5 C -0.64 -6.24 6.29 71.23 0.45 -5.79 16 6 C 0.53 12.55 7.85 87.66 0.69 13.24 16 7 O -0.59 -20.78 15.62 -0.14 0.00 -20.78 16 8 N -0.70 -15.04 5.33 -463.07 -2.47 -17.51 16 9 C 0.13 3.59 4.83 86.38 0.42 4.01 16 10 C -0.14 -4.06 2.03 -10.72 -0.02 -4.08 16 11 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 12 C 0.15 5.37 5.40 86.36 0.47 5.84 16 13 N -0.60 -26.67 2.99 -699.11 -2.09 -28.76 16 14 C -0.27 -12.66 9.58 84.03 0.81 -11.85 16 15 H 0.08 3.68 7.89 -2.91 -0.02 3.66 16 16 C -0.05 -2.39 4.91 84.86 0.42 -1.97 16 17 N -0.94 -51.73 11.19 21.65 0.24 -51.49 16 18 Si 0.97 40.49 29.59 68.60 2.03 42.52 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.30 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 C 0.18 7.83 5.11 86.36 0.44 8.27 16 23 C -0.17 -5.80 5.62 30.67 0.17 -5.63 16 24 C 0.30 9.94 1.63 30.62 0.05 9.99 16 25 F -0.21 -6.72 16.41 44.97 0.74 -5.99 16 26 F -0.21 -8.06 15.73 44.97 0.71 -7.35 16 27 H 0.16 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.16 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.21 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.21 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.42 6.13 7.71 -92.70 -0.71 5.41 16 33 H 0.06 1.97 7.97 -2.38 -0.02 1.95 16 34 H 0.07 2.15 7.63 -2.39 -0.02 2.13 16 35 H 0.01 0.55 7.92 -2.39 -0.02 0.53 16 36 H 0.09 2.68 7.14 -2.39 -0.02 2.66 16 37 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 38 H 0.00 0.11 7.92 -2.38 -0.02 0.09 16 39 H 0.07 3.74 6.04 -2.38 -0.01 3.72 16 40 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -87.26 356.21 -0.18 -87.44 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.35 Total: 8.30 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.09 Total: 12.14 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -4.32 Total: -97.76 kcal Atomic # 8 Polarization: -73.31 SS G_CDS: -4.52 Total: -77.83 kcal Atomic # 9 Polarization: -14.78 SS G_CDS: 1.45 Total: -13.34 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 38.78 SS G_CDS: -0.26 Total: 38.52 kcal Total: -87.26 -0.18 -87.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569738006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.169 kcal (2) G-P(sol) polarization free energy of solvation -87.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds