Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 N 1.46504 * 109.46698 * 240.00147 * 2 1 3 5 5 C 1.36933 * 120.00389 * 85.00155 * 4 2 1 6 6 H 1.08000 * 119.99716 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00350 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99802 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46888 * 60.00768 * 9 7 5 11 11 H 1.48504 * 109.46934 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47291 * 300.00250 * 9 7 5 13 13 C 1.52996 * 109.46890 * 120.00044 * 2 1 3 14 14 H 1.09005 * 110.91577 * 57.55092 * 13 2 1 15 15 C 1.55148 * 111.00659 * 293.64800 * 13 2 1 16 16 C 1.54312 * 102.86503 * 206.23120 * 15 13 2 17 17 N 1.47023 * 107.27636 * 22.52673 * 16 15 13 18 18 C 1.34769 * 125.64882 * 180.97349 * 17 16 15 19 19 O 1.21553 * 120.00402 * 184.89779 * 18 17 16 20 20 C 1.47863 * 120.00046 * 4.89745 * 18 17 16 21 21 C 1.39565 * 120.12445 * 352.06887 * 20 18 17 22 22 C 1.38182 * 119.85167 * 179.97438 * 21 20 18 23 23 F 1.35096 * 119.94610 * 180.02562 * 22 21 20 24 24 C 1.38574 * 120.10492 * 359.75093 * 22 21 20 25 25 C 1.38414 * 120.25461 * 0.50707 * 24 22 21 26 26 Cl 1.73602 * 119.92490 * 179.76504 * 25 24 22 27 27 C 1.38106 * 120.14297 * 359.49337 * 25 24 22 28 28 C 1.47420 * 108.70117 * 0.70326 * 17 16 15 29 29 H 1.09000 * 109.46833 * 300.00275 * 1 2 3 30 30 H 1.09003 * 109.46857 * 59.99462 * 1 2 3 31 31 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99692 * 264.99970 * 4 2 1 33 33 H 0.96995 * 119.99744 * 179.97438 * 8 7 5 34 34 H 1.09006 * 110.71965 * 324.78629 * 15 13 2 35 35 H 1.09004 * 110.72636 * 87.87947 * 15 13 2 36 36 H 1.09006 * 109.98504 * 263.04237 * 16 15 13 37 37 H 1.09004 * 109.77504 * 141.88311 * 16 15 13 38 38 H 1.07996 * 120.07875 * 359.96235 * 21 20 18 39 39 H 1.07996 * 119.87109 * 180.27515 * 24 22 21 40 40 H 1.08005 * 120.04924 * 180.27817 * 27 25 24 41 41 H 1.08995 * 110.37069 * 94.93991 * 28 17 16 42 42 H 1.09002 * 110.36495 * 217.15514 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4244 7 6 2.6122 -0.6618 -3.5091 8 7 2.9251 -1.9389 -3.4500 9 14 2.7899 0.2699 -5.1183 10 1 3.7445 1.3929 -4.9372 11 1 3.2989 -0.6485 -6.1684 12 1 1.4672 0.8058 -5.5287 13 6 2.0400 -0.7213 1.2492 14 1 1.6546 -1.7399 1.2950 15 6 1.6776 0.0687 2.5344 16 6 2.7744 -0.3691 3.5276 17 7 3.9165 -0.8466 2.7343 18 6 5.0701 -1.3337 3.2325 19 8 5.9839 -1.6178 2.4830 20 6 5.2242 -1.5225 4.6909 21 6 4.2470 -1.0462 5.5660 22 6 4.3965 -1.2262 6.9279 23 9 3.4514 -0.7663 7.7767 24 6 5.5115 -1.8826 7.4239 25 6 6.4860 -2.3521 6.5604 26 17 7.8823 -3.1680 7.1915 27 6 6.3471 -2.1779 5.1974 28 6 3.5881 -0.7103 1.3036 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2489 -1.6318 -1.1527 33 1 3.2484 -2.3961 -4.2420 34 1 1.7231 1.1426 2.3527 35 1 0.6907 -0.2178 2.8980 36 1 2.4023 -1.1729 4.1630 37 1 3.0777 0.4801 4.1400 38 1 3.3759 -0.5378 5.1798 39 1 5.6223 -2.0252 8.4887 40 1 7.1063 -2.5489 4.5246 41 1 3.9747 0.2312 0.9136 42 1 3.9951 -1.5495 0.7394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569821539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -26.232703 kcal Electronic energy + Delta-G solvation = -26743.433690 eV Core-core repulsion = 22664.916567 eV Total energy + Delta-G solvation = -4078.517123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.40102 -40.79006 -39.00379 -37.76896 -36.86942 -35.38721 -32.79357 -31.75971 -30.96651 -30.57579 -28.73377 -28.18056 -25.24838 -24.11403 -23.19090 -22.80273 -21.60668 -20.19231 -19.72651 -18.17738 -17.33272 -17.08334 -16.79047 -16.43942 -16.16113 -15.99962 -15.44724 -14.96203 -14.73830 -14.34301 -14.11830 -13.85975 -13.65398 -13.57078 -13.27276 -12.89217 -12.75951 -12.55889 -12.41409 -12.14286 -12.08174 -11.74134 -11.52361 -11.41736 -11.20352 -10.90412 -10.81305 -10.61381 -10.58893 -10.27216 -10.07583 -9.91015 -9.63785 -9.52767 -9.23928 -8.92284 -8.67383 -6.98202 -5.76605 -3.06048 0.17601 0.50235 1.50686 2.39673 2.81972 3.26605 3.44156 3.48776 3.49866 3.63746 4.03083 4.26060 4.45467 4.50499 4.53315 4.60993 4.69626 4.80858 4.93534 5.13354 5.20052 5.26807 5.36414 5.50347 5.53860 5.57738 5.64864 5.80158 5.83056 5.85782 5.95029 6.09583 6.11799 6.21434 6.29491 6.33901 6.49880 6.58145 6.80835 7.03340 7.40129 7.68910 8.00604 8.41297 9.52703 10.08718 10.43016 11.45760 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.002462 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.144670 B =11372.420297 C =12712.491449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.127 4.127 16 C 0.085 3.915 17 N -0.608 5.608 18 C 0.569 3.431 19 O -0.522 6.522 20 C -0.082 4.082 21 C -0.157 4.157 22 C 0.107 3.893 23 F -0.129 7.129 24 C -0.128 4.128 25 C -0.017 4.017 26 Cl -0.049 7.049 27 C -0.063 4.063 28 C 0.121 3.879 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.181 0.819 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.076 0.924 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 1.268 25.505 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.037 4.037 17 N -0.341 5.341 18 C 0.357 3.643 19 O -0.399 6.399 20 C -0.085 4.085 21 C -0.175 4.175 22 C 0.088 3.912 23 F -0.107 7.107 24 C -0.148 4.148 25 C -0.044 4.044 26 Cl -0.020 7.020 27 C -0.083 4.083 28 C 0.000 4.000 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.197 0.803 39 H 0.167 0.833 40 H 0.173 0.827 41 H 0.095 0.905 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.280 1.145 25.042 25.172 hybrid contribution 0.079 0.116 -0.569 0.586 sum 2.359 1.261 24.473 24.618 Atomic orbital electron populations 1.22445 0.99037 1.00923 1.00028 1.20154 0.91952 0.95158 0.85282 0.93238 1.42408 1.78190 1.10713 1.05253 1.19140 1.36884 0.93805 0.87301 0.91280 1.24730 1.02041 0.95944 0.98037 1.69643 1.50607 1.08635 1.29030 0.86299 0.77717 0.78652 0.83688 1.21270 1.21735 1.21347 1.22697 0.93877 1.00437 0.95207 0.89921 1.22757 0.97614 1.01366 0.94781 1.22584 0.87376 0.98661 0.95097 1.48456 1.14637 1.61738 1.09308 1.17609 0.81766 0.78149 0.86777 1.90850 1.38791 1.50783 1.59509 1.19711 0.94920 1.00250 0.93631 1.22935 1.02063 1.00944 0.91595 1.17288 0.87672 0.98845 0.87435 1.91554 1.62513 1.86611 1.70042 1.21172 0.92817 0.99358 1.01447 1.20454 0.90913 1.00027 0.92979 1.98405 1.39566 1.77182 1.86850 1.21250 0.97474 0.96179 0.93386 1.22352 0.95268 1.03596 0.78814 0.94392 0.92721 0.93488 0.78250 0.93431 0.89979 0.89699 0.90460 0.90512 0.80259 0.83263 0.82737 0.90548 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.34 37.16 0.35 -2.30 16 2 C 0.18 3.27 2.41 -67.93 -0.16 3.11 16 3 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16 4 N -0.72 -17.04 4.82 -53.42 -0.26 -17.29 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 9 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C -0.10 -1.46 2.62 -88.48 -0.23 -1.69 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.13 -1.26 5.59 -24.91 -0.14 -1.40 16 16 C 0.09 0.80 4.87 -3.07 -0.01 0.78 16 17 N -0.61 -8.17 3.33 -175.07 -0.58 -8.75 16 18 C 0.57 8.35 7.81 -12.32 -0.10 8.26 16 19 O -0.52 -9.75 16.67 5.32 0.09 -9.66 16 20 C -0.08 -0.93 5.87 -104.98 -0.62 -1.54 16 21 C -0.16 -1.43 8.57 -39.11 -0.34 -1.76 16 22 C 0.11 0.92 7.29 -39.48 -0.29 0.63 16 23 F -0.13 -1.11 17.26 2.25 0.04 -1.07 16 24 C -0.13 -1.03 9.80 -39.39 -0.39 -1.41 16 25 C -0.02 -0.15 6.31 -39.56 -0.25 -0.40 16 26 Cl -0.05 -0.41 28.95 -51.86 -1.50 -1.91 16 27 C -0.06 -0.68 9.37 -39.15 -0.37 -1.04 16 28 C 0.12 1.94 6.07 -2.53 -0.02 1.92 16 29 H 0.04 0.48 7.50 -51.93 -0.39 0.09 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 35 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 36 H 0.08 0.60 6.69 -51.93 -0.35 0.26 16 37 H 0.08 0.57 6.78 -51.93 -0.35 0.22 16 38 H 0.18 1.35 2.78 -56.95 -0.16 1.20 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.15 1.71 7.67 -52.48 -0.40 1.31 16 41 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 42 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -31.23 364.45 -9.12 -40.35 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.30 Total: 6.59 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.80 Total: -3.83 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.12 Total: -53.12 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.23 -9.12 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569821539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.114 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds