Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 N 1.46504 * 109.46698 * 240.00147 * 2 1 3 5 5 C 1.36933 * 120.00389 * 85.00155 * 4 2 1 6 6 H 1.08000 * 119.99716 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00350 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99802 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46888 * 60.00768 * 9 7 5 11 11 H 1.48504 * 109.46934 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47291 * 300.00250 * 9 7 5 13 13 C 1.52996 * 109.46890 * 120.00044 * 2 1 3 14 14 H 1.09005 * 110.91577 * 57.55092 * 13 2 1 15 15 C 1.55148 * 111.00659 * 293.64800 * 13 2 1 16 16 C 1.54312 * 102.86503 * 206.23120 * 15 13 2 17 17 N 1.47023 * 107.27636 * 22.52673 * 16 15 13 18 18 C 1.34769 * 125.64882 * 180.97349 * 17 16 15 19 19 O 1.21553 * 120.00402 * 184.89779 * 18 17 16 20 20 C 1.47863 * 120.00046 * 4.89745 * 18 17 16 21 21 C 1.39565 * 120.12445 * 352.06887 * 20 18 17 22 22 C 1.38182 * 119.85167 * 179.97438 * 21 20 18 23 23 F 1.35096 * 119.94610 * 180.02562 * 22 21 20 24 24 C 1.38574 * 120.10492 * 359.75093 * 22 21 20 25 25 C 1.38414 * 120.25461 * 0.50707 * 24 22 21 26 26 Cl 1.73602 * 119.92490 * 179.76504 * 25 24 22 27 27 C 1.38106 * 120.14297 * 359.49337 * 25 24 22 28 28 C 1.47420 * 108.70117 * 0.70326 * 17 16 15 29 29 H 1.09000 * 109.46833 * 300.00275 * 1 2 3 30 30 H 1.09003 * 109.46857 * 59.99462 * 1 2 3 31 31 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99692 * 264.99970 * 4 2 1 33 33 H 0.96995 * 119.99744 * 179.97438 * 8 7 5 34 34 H 1.09006 * 110.71965 * 324.78629 * 15 13 2 35 35 H 1.09004 * 110.72636 * 87.87947 * 15 13 2 36 36 H 1.09006 * 109.98504 * 263.04237 * 16 15 13 37 37 H 1.09004 * 109.77504 * 141.88311 * 16 15 13 38 38 H 1.07996 * 120.07875 * 359.96235 * 21 20 18 39 39 H 1.07996 * 119.87109 * 180.27515 * 24 22 21 40 40 H 1.08005 * 120.04924 * 180.27817 * 27 25 24 41 41 H 1.08995 * 110.37069 * 94.93991 * 28 17 16 42 42 H 1.09002 * 110.36495 * 217.15514 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4244 7 6 2.6122 -0.6618 -3.5091 8 7 2.9251 -1.9389 -3.4500 9 14 2.7899 0.2699 -5.1183 10 1 3.7445 1.3929 -4.9372 11 1 3.2989 -0.6485 -6.1684 12 1 1.4672 0.8058 -5.5287 13 6 2.0400 -0.7213 1.2492 14 1 1.6546 -1.7399 1.2950 15 6 1.6776 0.0687 2.5344 16 6 2.7744 -0.3691 3.5276 17 7 3.9165 -0.8466 2.7343 18 6 5.0701 -1.3337 3.2325 19 8 5.9839 -1.6178 2.4830 20 6 5.2242 -1.5225 4.6909 21 6 4.2470 -1.0462 5.5660 22 6 4.3965 -1.2262 6.9279 23 9 3.4514 -0.7663 7.7767 24 6 5.5115 -1.8826 7.4239 25 6 6.4860 -2.3521 6.5604 26 17 7.8823 -3.1680 7.1915 27 6 6.3471 -2.1779 5.1974 28 6 3.5881 -0.7103 1.3036 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2489 -1.6318 -1.1527 33 1 3.2484 -2.3961 -4.2420 34 1 1.7231 1.1426 2.3527 35 1 0.6907 -0.2178 2.8980 36 1 2.4023 -1.1729 4.1630 37 1 3.0777 0.4801 4.1400 38 1 3.3759 -0.5378 5.1798 39 1 5.6223 -2.0252 8.4887 40 1 7.1063 -2.5489 4.5246 41 1 3.9747 0.2312 0.9136 42 1 3.9951 -1.5495 0.7394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569821539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -44.833473 kcal Electronic energy + Delta-G solvation = -26744.240280 eV Core-core repulsion = 22664.916567 eV Total energy + Delta-G solvation = -4079.323713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.06074 -41.79413 -39.90898 -38.93778 -37.59636 -36.89736 -34.42153 -32.87533 -31.83310 -31.73477 -30.08568 -29.52413 -26.22790 -25.90922 -24.09828 -23.74149 -22.81516 -21.18301 -21.07743 -19.32936 -18.79922 -18.17847 -17.53955 -17.43937 -17.02623 -16.83850 -16.53095 -16.48870 -15.79340 -15.51842 -15.42565 -15.16450 -14.71954 -14.52427 -14.39195 -14.13625 -14.01752 -13.68184 -13.43147 -13.29393 -13.14202 -13.07509 -12.75646 -12.49754 -12.42998 -12.25739 -12.21964 -12.12489 -12.01146 -11.65788 -11.50073 -11.30689 -11.20202 -10.90874 -10.29451 -9.98913 -9.75755 -8.96891 -7.91096 -5.18233 -0.60845 -0.22737 0.80168 1.46561 1.46923 1.49506 1.55176 1.76567 2.37035 2.57762 2.88084 3.19686 3.42516 3.50333 3.56221 3.72272 3.76289 3.85268 3.88181 4.08770 4.20133 4.22321 4.35911 4.41012 4.53493 4.60865 4.64549 4.69124 4.80817 4.84316 4.86493 4.90388 4.96381 5.09940 5.13194 5.21360 5.32237 5.42835 5.43974 5.55432 5.68309 6.31212 6.33991 6.88933 7.37225 8.15804 8.35953 9.32383 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.002462 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.144670 B =11372.420297 C =12712.491449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.972 5.972 9 Si 0.966 3.034 10 H -0.281 1.281 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.093 4.093 14 H 0.079 0.921 15 C -0.114 4.114 16 C 0.077 3.923 17 N -0.606 5.606 18 C 0.563 3.437 19 O -0.580 6.580 20 C -0.095 4.095 21 C -0.143 4.143 22 C 0.112 3.888 23 F -0.123 7.123 24 C -0.113 4.113 25 C -0.018 4.018 26 Cl -0.044 7.044 27 C -0.073 4.073 28 C 0.125 3.875 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.370 0.630 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.200 0.800 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.057 0.943 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 2.927 28.945 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.796 3.204 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.203 1.203 13 C -0.113 4.113 14 H 0.098 0.902 15 C -0.152 4.152 16 C -0.043 4.043 17 N -0.338 5.338 18 C 0.353 3.647 19 O -0.461 6.461 20 C -0.099 4.099 21 C -0.161 4.161 22 C 0.092 3.908 23 F -0.102 7.102 24 C -0.133 4.133 25 C -0.045 4.045 26 Cl -0.015 7.015 27 C -0.092 4.092 28 C 0.002 3.998 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.201 0.799 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.216 0.784 39 H 0.192 0.808 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.247 2.864 28.549 28.693 hybrid contribution 0.690 -0.366 -1.502 1.693 sum 0.938 2.498 27.046 27.178 Atomic orbital electron populations 1.22277 0.96900 1.00937 1.01169 1.20441 0.93225 0.94810 0.84530 0.93406 1.42659 1.78484 1.10252 1.06424 1.19554 1.34272 0.94111 0.88305 0.90546 1.25499 1.03425 0.96814 1.01390 1.69811 1.52956 1.10253 1.29260 0.85307 0.77942 0.77283 0.79846 1.20688 1.22709 1.20253 1.22511 0.91965 1.00788 0.96054 0.90246 1.22808 0.99374 1.01276 0.91753 1.22982 0.85637 1.00651 0.95043 1.48496 1.15522 1.61224 1.08549 1.18195 0.81251 0.77200 0.88077 1.90811 1.40805 1.53313 1.61173 1.19354 0.96412 1.02480 0.91631 1.22991 1.01624 0.99959 0.91515 1.17213 0.87774 0.98652 0.87171 1.91578 1.62303 1.86506 1.69780 1.21436 0.91767 0.97527 1.02529 1.20411 0.91512 1.00263 0.92343 1.98410 1.39387 1.77085 1.86578 1.21202 0.97266 0.96608 0.94165 1.22053 0.96728 1.00606 0.80376 0.89830 0.94921 0.94030 0.79885 0.94345 0.88842 0.86358 0.87822 0.87439 0.78415 0.80764 0.84249 0.92460 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.34 71.98 0.67 -3.93 16 2 C 0.18 6.18 2.41 44.99 0.11 6.29 16 3 H 0.05 1.68 8.05 -2.39 -0.02 1.67 16 4 N -0.74 -35.68 4.82 -322.94 -1.56 -37.23 16 5 C -0.23 -12.53 9.93 84.03 0.83 -11.69 16 6 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 7 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 8 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 9 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C -0.09 -2.56 2.62 -9.40 -0.02 -2.59 16 14 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 15 C -0.11 -1.80 5.59 31.78 0.18 -1.62 16 16 C 0.08 1.16 4.87 86.72 0.42 1.58 16 17 N -0.61 -16.07 3.33 -826.06 -2.75 -18.82 16 18 C 0.56 16.99 7.81 86.79 0.68 17.67 16 19 O -0.58 -23.38 16.67 -3.88 -0.06 -23.44 16 20 C -0.10 -2.09 5.87 -20.10 -0.12 -2.21 16 21 C -0.14 -2.15 8.57 22.58 0.19 -1.95 16 22 C 0.11 1.50 7.29 22.34 0.16 1.66 16 23 F -0.12 -1.59 17.26 44.97 0.78 -0.81 16 24 C -0.11 -1.45 9.80 22.39 0.22 -1.23 16 25 C -0.02 -0.30 6.31 22.28 0.14 -0.16 16 26 Cl -0.04 -0.68 28.95 -2.72 -0.08 -0.76 16 27 C -0.07 -1.55 9.37 22.55 0.21 -1.33 16 28 C 0.12 4.18 6.07 86.86 0.53 4.71 16 29 H 0.08 1.76 7.50 -2.39 -0.02 1.74 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.37 19.73 7.80 -92.71 -0.72 19.01 16 33 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.09 1.33 8.01 -2.38 -0.02 1.32 16 35 H 0.12 1.19 8.13 -2.38 -0.02 1.17 16 36 H 0.10 1.10 6.69 -2.38 -0.02 1.09 16 37 H 0.11 1.06 6.78 -2.39 -0.02 1.04 16 38 H 0.20 2.08 2.78 -7.10 -0.02 2.06 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.14 3.34 7.67 -2.91 -0.02 3.32 16 41 H 0.06 2.09 8.04 -2.39 -0.02 2.08 16 42 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 Total: -1.00 -73.18 364.45 3.64 -69.53 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.33 Total: 21.90 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.67 Total: 1.09 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -4.02 Total: -116.23 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.78 Total: -0.81 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -73.18 3.64 -69.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569821539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.701 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds