Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.91489 * 2 1 4 4 C 1.55115 * 110.93908 * 124.06424 * 2 1 3 5 5 N 1.47424 * 104.94259 * 81.21188 * 4 2 1 6 6 C 1.34779 * 125.64658 * 204.03975 * 5 4 2 7 7 O 1.21571 * 120.00389 * 354.90473 * 6 5 4 8 8 C 1.47698 * 119.99880 * 174.90840 * 6 5 4 9 9 C 1.39677 * 120.15928 * 7.78337 * 8 6 5 10 10 C 1.37851 * 119.89733 * 180.02562 * 9 8 6 11 11 C 1.38449 * 120.23776 * 359.97438 * 10 9 8 12 12 C 1.38298 * 120.32151 * 0.02562 * 11 10 9 13 13 Cl 1.73598 * 119.95284 * 179.97438 * 12 11 10 14 14 C 1.38440 * 120.09378 * 359.67431 * 12 11 10 15 15 F 1.35103 * 120.11372 * 180.30051 * 14 12 11 16 16 C 1.47019 * 108.70408 * 24.00858 * 5 4 2 17 17 C 1.54318 * 107.27151 * 358.93538 * 16 5 4 18 18 H 1.09000 * 110.72058 * 96.34706 * 17 16 5 19 19 C 1.53001 * 110.72236 * 219.44552 * 17 16 5 20 20 N 1.46490 * 109.47256 * 291.15912 * 19 17 16 21 21 C 1.36938 * 119.99904 * 180.27372 * 20 19 17 22 22 H 1.07991 * 120.00222 * 359.72885 * 21 20 19 23 23 C 1.38816 * 119.99858 * 179.72381 * 21 20 19 24 24 N 1.31618 * 119.99854 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00073 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.47148 * 89.99923 * 25 23 21 27 27 H 1.48495 * 109.47498 * 209.99992 * 25 23 21 28 28 H 1.48504 * 109.47274 * 330.00317 * 25 23 21 29 29 H 1.09004 * 109.46962 * 183.89836 * 1 2 3 30 30 H 1.09000 * 109.47440 * 303.89450 * 1 2 3 31 31 H 1.09005 * 109.47657 * 63.89823 * 1 2 3 32 32 H 1.09007 * 110.41912 * 322.28799 * 4 2 1 33 33 H 1.08999 * 110.30393 * 200.08469 * 4 2 1 34 34 H 1.07992 * 120.04650 * 0.02562 * 9 8 6 35 35 H 1.08008 * 119.87742 * 179.97438 * 10 9 8 36 36 H 1.07991 * 119.83792 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.87993 * 239.52341 * 16 5 4 38 38 H 1.08996 * 109.88767 * 118.35671 * 16 5 4 39 39 H 1.09007 * 109.47050 * 171.15426 * 19 17 16 40 40 H 1.09005 * 109.46792 * 51.16395 * 19 17 16 41 41 H 0.97003 * 120.00271 * 359.97438 * 20 19 17 42 42 H 0.97005 * 119.99689 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0843 -0.8115 1.2001 5 7 2.0169 -2.2200 0.7702 6 6 1.9514 -3.2888 1.5887 7 8 2.0376 -3.1392 2.7921 8 6 1.7749 -4.6419 1.0236 9 6 1.8380 -4.8393 -0.3577 10 6 1.6720 -6.1045 -0.8793 11 6 1.4433 -7.1807 -0.0389 12 6 1.3790 -6.9960 1.3302 13 17 1.0912 -8.3521 2.3751 14 6 1.5500 -5.7323 1.8690 15 9 1.4933 -5.5524 3.2068 16 6 2.0323 -2.2657 -0.6992 17 6 2.0861 -0.8078 -1.2024 18 1 3.1122 -0.5136 -1.4230 19 6 1.1964 -0.6270 -2.4339 20 7 1.7784 -1.3503 -3.5672 21 6 1.1553 -1.3280 -4.7864 22 1 0.2327 -0.7809 -4.9114 23 6 1.7098 -2.0087 -5.8617 24 7 1.1112 -1.9869 -7.0337 25 14 3.3062 -2.9543 -5.6457 26 1 3.0036 -4.3499 -5.2379 27 1 4.0530 -2.9646 -6.9291 28 1 4.1311 -2.3005 -4.5982 29 1 -0.3633 -1.0253 0.0699 30 1 -0.3634 0.5731 0.8530 31 1 -0.3634 0.4521 -0.9229 32 1 1.4655 -0.6545 2.0837 33 1 3.1162 -0.5263 1.4052 34 1 2.0166 -4.0020 -1.0159 35 1 1.7205 -6.2566 -1.9475 36 1 1.3138 -8.1689 -0.4545 37 1 1.1271 -2.7507 -1.0644 38 1 2.9117 -2.8096 -1.0441 39 1 1.1244 0.4330 -2.6777 40 1 0.2015 -1.0200 -2.2243 41 1 2.6073 -1.8414 -3.4550 42 1 1.4989 -2.4622 -7.7852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569846776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -37.952548 kcal Electronic energy + Delta-G solvation = -27663.851204 eV Core-core repulsion = 23584.825870 eV Total energy + Delta-G solvation = -4079.025334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.15266 -41.85362 -39.96762 -39.11738 -37.68137 -36.52631 -34.48856 -33.44408 -32.20138 -31.71737 -30.70807 -28.05317 -27.34772 -25.55571 -24.28767 -23.86467 -22.81124 -21.23548 -20.81086 -19.41745 -18.70730 -18.54876 -17.87951 -17.56048 -17.08621 -16.77807 -16.60782 -16.13866 -15.87173 -15.83160 -15.25206 -14.93682 -14.67097 -14.56316 -14.46957 -14.14150 -14.06812 -14.01663 -13.55632 -13.41352 -13.23527 -13.12314 -12.81704 -12.68703 -12.65611 -12.37824 -12.22358 -12.09292 -11.76680 -11.63489 -11.49847 -11.40126 -11.15836 -10.85421 -10.30307 -9.97439 -9.74364 -9.21539 -7.93997 -5.28181 -0.59464 -0.24224 0.76402 1.44983 1.50142 1.51914 1.57804 1.74155 2.36763 2.57108 2.80959 3.05537 3.33226 3.38447 3.46108 3.67704 3.69970 3.74085 3.96867 4.01965 4.15621 4.19244 4.25940 4.44421 4.52547 4.61036 4.64994 4.69452 4.73047 4.78816 4.87373 4.89428 5.00079 5.03373 5.08148 5.20830 5.24189 5.30894 5.44264 5.48614 5.85595 6.23181 6.28673 6.85823 7.17143 7.91383 8.11427 9.27590 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.003892 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.438217 B = 7192.319044 C = 9281.137605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.119 0.881 4 C 0.109 3.891 5 N -0.601 5.601 6 C 0.569 3.431 7 O -0.568 6.568 8 C -0.174 4.174 9 C -0.088 4.088 10 C -0.115 4.115 11 C -0.045 4.045 12 C -0.092 4.092 13 Cl -0.043 7.043 14 C 0.140 3.860 15 F -0.124 7.124 16 C 0.088 3.912 17 C -0.099 4.099 18 H 0.101 0.899 19 C 0.166 3.834 20 N -0.755 5.755 21 C -0.231 4.231 22 H 0.054 0.946 23 C -0.064 4.064 24 N -0.987 5.987 25 Si 0.949 3.051 26 H -0.264 1.264 27 H -0.307 1.307 28 H -0.246 1.246 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.184 0.816 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.368 0.632 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -6.647 16.925 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.137 0.863 4 C -0.012 4.012 5 N -0.333 5.333 6 C 0.359 3.641 7 O -0.449 6.449 8 C -0.178 4.178 9 C -0.106 4.106 10 C -0.133 4.133 11 C -0.064 4.064 12 C -0.120 4.120 13 Cl -0.014 7.014 14 C 0.118 3.882 15 F -0.102 7.102 16 C -0.034 4.034 17 C -0.118 4.118 18 H 0.119 0.881 19 C 0.040 3.960 20 N -0.402 5.402 21 C -0.362 4.362 22 H 0.072 0.928 23 C -0.255 4.255 24 N -0.638 5.638 25 Si 0.775 3.225 26 H -0.190 1.190 27 H -0.234 1.234 28 H -0.170 1.170 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.200 0.800 35 H 0.192 0.808 36 H 0.197 0.803 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.201 0.799 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.809 -6.659 17.649 19.071 hybrid contribution 0.587 -0.659 0.039 0.883 sum 3.395 -7.318 17.688 19.441 Atomic orbital electron populations 1.21794 0.94173 1.01543 1.02698 1.22383 0.96476 0.99885 0.91573 0.86273 1.22533 1.02050 0.78531 0.98130 1.48307 1.71183 1.06543 1.07268 1.17793 0.76969 0.83968 0.85327 1.90809 1.52422 1.86259 1.15436 1.19903 1.10650 0.92265 0.94992 1.23072 0.93256 1.01320 0.92908 1.21646 0.98466 0.90784 1.02428 1.21627 0.93457 1.02383 0.88884 1.21029 1.09967 0.87328 0.93667 1.98392 1.94524 1.42076 1.66400 1.17647 1.00320 0.92570 0.77614 1.91564 1.92992 1.95960 1.29679 1.22799 1.02828 0.99018 0.78709 1.22484 1.01394 0.93423 0.94521 0.88104 1.20819 0.95088 0.95309 0.84737 1.42680 1.27897 1.62140 1.07443 1.18985 1.04641 1.25290 0.87303 0.92803 1.25520 1.02589 1.02385 0.95005 1.69904 1.42802 1.49146 1.01960 0.85506 0.80009 0.79808 0.77130 1.18955 1.23443 1.17029 0.93946 0.91304 0.91633 0.90608 0.89869 0.80007 0.80838 0.80336 0.89557 0.88952 0.95025 0.94791 0.79898 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.16 71.98 0.59 -2.19 16 2 C -0.08 -1.49 3.56 -9.33 -0.03 -1.52 16 3 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.11 2.19 6.35 86.93 0.55 2.74 16 5 N -0.60 -14.31 3.32 -826.44 -2.74 -17.05 16 6 C 0.57 16.66 7.80 86.74 0.68 17.34 16 7 O -0.57 -20.58 15.67 -3.94 -0.06 -20.65 16 8 C -0.17 -4.51 5.88 -20.05 -0.12 -4.63 16 9 C -0.09 -1.81 8.59 22.53 0.19 -1.62 16 10 C -0.12 -1.90 10.03 22.23 0.22 -1.68 16 11 C -0.04 -0.72 9.82 22.33 0.22 -0.50 16 12 C -0.09 -1.97 6.32 22.33 0.14 -1.83 16 13 Cl -0.04 -0.86 28.61 -2.72 -0.08 -0.94 16 14 C 0.14 3.76 7.25 22.69 0.16 3.92 16 15 F -0.12 -3.93 15.15 44.97 0.68 -3.25 16 16 C 0.09 1.90 3.96 86.73 0.34 2.24 16 17 C -0.10 -2.14 2.84 -9.60 -0.03 -2.17 16 18 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 19 C 0.17 5.01 4.43 86.38 0.38 5.39 16 20 N -0.76 -29.55 5.28 -343.46 -1.81 -31.36 16 21 C -0.23 -11.92 10.47 84.03 0.88 -11.04 16 22 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 23 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 24 N -0.99 -59.95 13.97 21.65 0.30 -59.65 16 25 Si 0.95 40.20 27.73 68.60 1.90 42.10 16 26 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 27 H -0.31 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.25 -9.04 6.52 99.48 0.65 -8.39 16 29 H 0.04 0.93 7.92 -2.38 -0.02 0.91 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.33 6.79 -2.38 -0.02 1.31 16 32 H 0.08 1.63 8.00 -2.38 -0.02 1.61 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.18 3.53 2.77 -7.34 -0.02 3.51 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.18 1.72 8.06 -2.92 -0.02 1.69 16 37 H 0.09 1.96 6.26 -2.39 -0.01 1.95 16 38 H 0.09 1.77 6.80 -2.39 -0.02 1.76 16 39 H 0.03 1.00 8.12 -2.38 -0.02 0.98 16 40 H 0.03 1.06 6.79 -2.38 -0.02 1.05 16 41 H 0.37 13.23 5.46 -92.71 -0.51 12.72 16 42 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -70.82 355.38 3.34 -67.48 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.50 Total: 21.82 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 4.65 Total: 1.49 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -4.25 Total: -108.06 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.68 Total: -3.25 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.90 Total: 42.10 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -70.82 3.34 -67.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569846776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds