Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34771 * 120.00266 * 2 1 4 4 O 1.21554 * 120.00508 * 184.86859 * 3 2 1 5 5 C 1.47856 * 119.99954 * 4.86862 * 3 2 1 6 6 C 1.39578 * 120.12430 * 320.88231 * 5 3 2 7 7 C 1.38176 * 119.85322 * 179.97438 * 6 5 3 8 8 F 1.35091 * 119.94541 * 180.02562 * 7 6 5 9 9 C 1.38570 * 120.10525 * 359.97438 * 7 6 5 10 10 C 1.38408 * 120.25876 * 0.02562 * 9 7 6 11 11 Cl 1.73598 * 119.92828 * 180.02562 * 10 9 7 12 12 C 1.38112 * 120.14347 * 0.02562 * 10 9 7 13 13 C 1.46503 * 119.99990 * 180.02562 * 2 1 3 14 14 H 1.09000 * 109.47044 * 180.02562 * 13 2 1 15 15 C 1.53006 * 109.46872 * 299.99599 * 13 2 1 16 16 N 1.46502 * 109.47069 * 304.99788 * 15 13 2 17 17 C 1.36938 * 119.99577 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99995 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99571 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00217 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99845 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46924 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46912 * 119.99903 * 21 19 17 24 24 H 1.48496 * 109.47158 * 239.99881 * 21 19 17 25 25 C 1.53004 * 109.47337 * 59.99720 * 13 2 1 26 26 C 1.52995 * 117.49703 * 248.74993 * 25 13 2 27 27 C 1.52997 * 117.49987 * 180.08947 * 25 13 2 28 28 H 1.09005 * 109.47683 * 85.49780 * 1 2 3 29 29 H 1.09001 * 109.47290 * 205.50225 * 1 2 3 30 30 H 1.08999 * 109.47269 * 325.49647 * 1 2 3 31 31 H 1.07996 * 120.07362 * 359.70249 * 6 5 3 32 32 H 1.08001 * 119.86937 * 180.02562 * 9 7 6 33 33 H 1.08007 * 120.05394 * 180.02562 * 12 10 9 34 34 H 1.08992 * 109.46864 * 65.00387 * 15 13 2 35 35 H 1.09005 * 109.46589 * 185.00260 * 15 13 2 36 36 H 0.96996 * 120.00006 * 0.02562 * 16 15 13 37 37 H 0.97000 * 120.00764 * 180.02562 * 20 19 17 38 38 H 1.08995 * 115.54595 * 34.41515 * 25 13 2 39 39 H 1.08998 * 117.50123 * 359.97438 * 26 25 13 40 40 H 1.09002 * 117.49997 * 145.02282 * 26 25 13 41 41 H 1.08998 * 117.50029 * 214.97962 * 27 25 13 42 42 H 1.09003 * 117.49572 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3511 1.1691 -0.0893 5 6 1.4036 2.4453 0.1087 6 6 0.1895 2.6141 -0.5590 7 6 -0.4931 3.8107 -0.4531 8 9 -1.6686 3.9759 -1.0982 9 6 0.0255 4.8413 0.3145 10 6 1.2290 4.6788 0.9785 11 17 1.8705 5.9752 1.9383 12 6 1.9206 3.4875 0.8791 13 6 2.1974 -1.2688 -0.0006 14 1 3.2691 -1.0696 0.0000 15 6 1.8278 -2.0715 1.2484 16 7 2.0707 -1.2573 2.4419 17 6 1.8104 -1.7697 3.6848 18 1 1.4264 -2.7740 3.7853 19 6 2.0400 -0.9980 4.8156 20 7 2.5084 0.2259 4.6932 21 14 1.6855 -1.6971 6.5112 22 1 1.1713 -3.0838 6.3773 23 1 2.9353 -1.7084 7.3131 24 1 0.6688 -0.8551 7.1911 25 6 1.8278 -2.0706 -1.2501 26 6 1.0114 -3.3494 -1.0530 27 6 2.4911 -3.4368 -1.4347 28 1 -0.3634 0.0807 -1.0245 29 1 -0.3634 -0.9275 0.4425 30 1 -0.3634 0.8469 0.5821 31 1 -0.2132 1.8127 -1.1606 32 1 -0.5115 5.7749 0.3949 33 1 2.8595 3.3621 1.3982 34 1 0.7742 -2.3469 1.2046 35 1 2.4377 -2.9739 1.2939 36 1 2.4152 -0.3551 2.3516 37 1 2.6693 0.7650 5.4833 38 1 1.6315 -1.4812 -2.1458 39 1 0.7380 -3.6198 -0.0331 40 1 0.2783 -3.6017 -1.8192 41 1 2.7310 -3.7466 -2.4518 42 1 3.1913 -3.7643 -0.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571368501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -2.945424 kcal Electronic energy + Delta-G solvation = -27703.072181 eV Core-core repulsion = 23625.564870 eV Total energy + Delta-G solvation = -4077.507311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.13730 -40.50848 -38.84052 -37.61029 -36.52456 -35.14004 -34.12585 -31.77834 -30.84465 -30.60087 -28.16728 -26.76951 -24.81544 -23.64566 -22.92839 -22.57192 -21.94914 -20.50401 -18.86791 -17.81394 -17.15524 -17.13247 -16.54065 -16.28739 -16.10840 -15.83006 -15.32365 -15.05095 -14.66143 -14.46664 -14.05886 -13.81142 -13.50177 -13.31722 -13.18211 -12.92536 -12.82465 -12.34493 -12.23293 -12.13753 -11.69964 -11.54334 -11.33056 -11.28899 -11.17703 -11.08369 -10.83509 -10.77138 -10.40424 -10.08600 -9.86799 -9.73675 -9.62765 -9.14342 -8.89966 -8.88151 -8.39299 -6.93611 -5.76455 -3.06039 0.56607 0.84194 1.85089 2.71739 3.02481 3.41969 3.47067 3.47541 3.49910 3.92439 3.97009 4.36190 4.56216 4.57579 4.79492 4.81956 4.87965 5.01515 5.08660 5.12271 5.26268 5.38116 5.47589 5.51129 5.54716 5.66610 5.72637 5.77607 5.86414 5.89243 5.92821 5.97604 6.01446 6.21967 6.23181 6.33164 6.39823 6.45323 6.61886 6.86125 7.54692 7.68150 8.30704 8.40727 9.52647 10.09324 10.44558 11.45650 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.007831 B = 0.004698 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.663509 B = 5958.925677 C = 8340.094023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.584 5.584 3 C 0.565 3.435 4 O -0.525 6.525 5 C -0.075 4.075 6 C -0.127 4.127 7 C 0.103 3.897 8 F -0.132 7.132 9 C -0.130 4.130 10 C -0.013 4.013 11 Cl -0.050 7.050 12 C -0.056 4.056 13 C 0.161 3.839 14 H 0.106 0.894 15 C 0.142 3.858 16 N -0.727 5.727 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.927 5.927 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.159 4.159 26 C -0.183 4.183 27 C -0.172 4.172 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.027 0.973 35 H 0.030 0.970 36 H 0.385 0.615 37 H 0.254 0.746 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 5.135 -14.370 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.315 5.315 3 C 0.352 3.648 4 O -0.402 6.402 5 C -0.079 4.079 6 C -0.146 4.146 7 C 0.083 3.917 8 F -0.110 7.110 9 C -0.150 4.150 10 C -0.040 4.040 11 Cl -0.021 7.021 12 C -0.076 4.076 13 C 0.058 3.942 14 H 0.124 0.876 15 C 0.014 3.986 16 N -0.372 5.372 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.178 4.178 26 C -0.220 4.220 27 C -0.210 4.210 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.946 5.128 -14.210 16.235 hybrid contribution -0.417 0.127 1.020 1.110 sum -6.363 5.255 -13.190 15.559 Atomic orbital electron populations 1.22062 0.79749 1.04634 1.00319 1.47468 1.06962 1.05223 1.71810 1.17971 0.86927 0.83150 0.76745 1.90805 1.13156 1.86823 1.49415 1.19653 0.94522 0.94973 0.98744 1.21722 0.94503 0.97224 1.01186 1.17183 0.83645 0.94459 0.96374 1.91530 1.44217 1.95885 1.79393 1.21076 0.95821 1.00012 0.98102 1.20428 0.95026 0.90907 0.97604 1.98397 1.85972 1.47866 1.69853 1.21231 1.00372 0.89663 0.96299 1.20917 0.97936 0.81983 0.93346 0.87597 1.21132 0.97868 0.93606 0.85980 1.42293 1.78840 1.15708 1.00357 1.19211 1.36452 0.98043 0.83570 0.91238 1.24731 1.01936 0.96300 0.97721 1.69674 1.50812 1.08709 1.28304 0.86161 0.77430 0.77956 0.84879 1.20612 1.21863 1.21913 1.22558 1.05787 0.90148 0.99356 1.23202 0.94044 1.01325 1.03433 1.22956 0.96136 0.99356 1.02514 0.92908 0.89924 0.90764 0.82851 0.83426 0.82848 0.95520 0.95238 0.78105 0.93560 0.87866 0.87471 0.89234 0.89012 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 8.22 59.84 0.49 1.47 16 2 N -0.58 -9.29 2.24 -175.04 -0.39 -9.69 16 3 C 0.56 9.94 7.06 -12.33 -0.09 9.85 16 4 O -0.53 -10.94 16.25 5.32 0.09 -10.86 16 5 C -0.08 -1.13 5.24 -104.98 -0.55 -1.68 16 6 C -0.13 -1.54 7.53 -39.10 -0.29 -1.84 16 7 C 0.10 1.20 7.29 -39.48 -0.29 0.91 16 8 F -0.13 -1.48 17.26 2.25 0.04 -1.44 16 9 C -0.13 -1.49 9.80 -39.40 -0.39 -1.87 16 10 C -0.01 -0.17 6.31 -39.57 -0.25 -0.42 16 11 Cl -0.05 -0.62 28.95 -51.86 -1.50 -2.12 16 12 C -0.06 -0.85 9.41 -39.14 -0.37 -1.22 16 13 C 0.16 2.66 2.58 -67.92 -0.18 2.48 16 14 H 0.11 2.02 6.91 -51.93 -0.36 1.66 16 15 C 0.14 2.73 4.15 -4.04 -0.02 2.71 16 16 N -0.73 -18.12 5.43 -59.91 -0.33 -18.44 16 17 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 21 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C -0.16 -2.02 5.48 -90.62 -0.50 -2.52 16 26 C -0.18 -2.08 9.59 -26.70 -0.26 -2.33 16 27 C -0.17 -1.98 9.94 -26.70 -0.27 -2.25 16 28 H 0.05 0.51 6.89 -51.93 -0.36 0.16 16 29 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 30 H 0.07 0.99 5.81 -51.93 -0.30 0.68 16 31 H 0.15 1.55 5.31 -52.49 -0.28 1.27 16 32 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.15 2.52 8.05 -52.48 -0.42 2.10 16 34 H 0.03 0.50 5.33 -51.93 -0.28 0.22 16 35 H 0.03 0.58 7.44 -51.93 -0.39 0.19 16 36 H 0.38 10.41 7.06 -40.82 -0.29 10.12 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.11 1.34 5.80 -51.93 -0.30 1.04 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.21 7.66 -51.93 -0.40 0.82 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -31.57 363.58 -9.05 -40.61 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.95 Total: 10.23 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.19 Total: -3.90 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.01 Total: -55.28 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.57 -9.05 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571368501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.668 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds