Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34771 * 120.00266 * 2 1 4 4 O 1.21554 * 120.00508 * 184.86859 * 3 2 1 5 5 C 1.47856 * 119.99954 * 4.86862 * 3 2 1 6 6 C 1.39578 * 120.12430 * 320.88231 * 5 3 2 7 7 C 1.38176 * 119.85322 * 179.97438 * 6 5 3 8 8 F 1.35091 * 119.94541 * 180.02562 * 7 6 5 9 9 C 1.38570 * 120.10525 * 359.97438 * 7 6 5 10 10 C 1.38408 * 120.25876 * 0.02562 * 9 7 6 11 11 Cl 1.73598 * 119.92828 * 180.02562 * 10 9 7 12 12 C 1.38112 * 120.14347 * 0.02562 * 10 9 7 13 13 C 1.46503 * 119.99990 * 180.02562 * 2 1 3 14 14 H 1.09000 * 109.47044 * 180.02562 * 13 2 1 15 15 C 1.53006 * 109.46872 * 299.99599 * 13 2 1 16 16 N 1.46502 * 109.47069 * 304.99788 * 15 13 2 17 17 C 1.36938 * 119.99577 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99995 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99571 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00217 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99845 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46924 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46912 * 119.99903 * 21 19 17 24 24 H 1.48496 * 109.47158 * 239.99881 * 21 19 17 25 25 C 1.53004 * 109.47337 * 59.99720 * 13 2 1 26 26 C 1.52995 * 117.49703 * 248.74993 * 25 13 2 27 27 C 1.52997 * 117.49987 * 180.08947 * 25 13 2 28 28 H 1.09005 * 109.47683 * 85.49780 * 1 2 3 29 29 H 1.09001 * 109.47290 * 205.50225 * 1 2 3 30 30 H 1.08999 * 109.47269 * 325.49647 * 1 2 3 31 31 H 1.07996 * 120.07362 * 359.70249 * 6 5 3 32 32 H 1.08001 * 119.86937 * 180.02562 * 9 7 6 33 33 H 1.08007 * 120.05394 * 180.02562 * 12 10 9 34 34 H 1.08992 * 109.46864 * 65.00387 * 15 13 2 35 35 H 1.09005 * 109.46589 * 185.00260 * 15 13 2 36 36 H 0.96996 * 120.00006 * 0.02562 * 16 15 13 37 37 H 0.97000 * 120.00764 * 180.02562 * 20 19 17 38 38 H 1.08995 * 115.54595 * 34.41515 * 25 13 2 39 39 H 1.08998 * 117.50123 * 359.97438 * 26 25 13 40 40 H 1.09002 * 117.49997 * 145.02282 * 26 25 13 41 41 H 1.08998 * 117.50029 * 214.97962 * 27 25 13 42 42 H 1.09003 * 117.49572 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3511 1.1691 -0.0893 5 6 1.4036 2.4453 0.1087 6 6 0.1895 2.6141 -0.5590 7 6 -0.4931 3.8107 -0.4531 8 9 -1.6686 3.9759 -1.0982 9 6 0.0255 4.8413 0.3145 10 6 1.2290 4.6788 0.9785 11 17 1.8705 5.9752 1.9383 12 6 1.9206 3.4875 0.8791 13 6 2.1974 -1.2688 -0.0006 14 1 3.2691 -1.0696 0.0000 15 6 1.8278 -2.0715 1.2484 16 7 2.0707 -1.2573 2.4419 17 6 1.8104 -1.7697 3.6848 18 1 1.4264 -2.7740 3.7853 19 6 2.0400 -0.9980 4.8156 20 7 2.5084 0.2259 4.6932 21 14 1.6855 -1.6971 6.5112 22 1 1.1713 -3.0838 6.3773 23 1 2.9353 -1.7084 7.3131 24 1 0.6688 -0.8551 7.1911 25 6 1.8278 -2.0706 -1.2501 26 6 1.0114 -3.3494 -1.0530 27 6 2.4911 -3.4368 -1.4347 28 1 -0.3634 0.0807 -1.0245 29 1 -0.3634 -0.9275 0.4425 30 1 -0.3634 0.8469 0.5821 31 1 -0.2132 1.8127 -1.1606 32 1 -0.5115 5.7749 0.3949 33 1 2.8595 3.3621 1.3982 34 1 0.7742 -2.3469 1.2046 35 1 2.4377 -2.9739 1.2939 36 1 2.4152 -0.3551 2.3516 37 1 2.6693 0.7650 5.4833 38 1 1.6315 -1.4812 -2.1458 39 1 0.7380 -3.6198 -0.0331 40 1 0.2783 -3.6017 -1.8192 41 1 2.7310 -3.7466 -2.4518 42 1 3.1913 -3.7643 -0.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571368501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = -20.650629 kcal Electronic energy + Delta-G solvation = -27703.839937 eV Core-core repulsion = 23625.564870 eV Total energy + Delta-G solvation = -4078.275067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.06072 -41.74666 -39.95374 -38.81982 -37.56670 -36.46120 -35.89470 -33.31157 -32.34264 -31.67438 -29.64178 -27.99273 -26.43758 -24.97798 -23.97226 -23.94987 -23.07585 -21.64587 -20.21221 -19.07926 -18.96752 -18.27148 -17.62510 -17.44900 -17.27712 -16.80462 -16.60219 -16.43392 -16.05279 -15.78106 -15.33158 -15.07707 -14.90267 -14.72043 -14.54116 -14.30372 -14.03128 -13.71232 -13.37395 -13.26161 -13.06674 -12.96510 -12.78639 -12.64556 -12.35881 -12.30121 -12.21021 -12.19040 -11.97720 -11.76780 -11.42861 -11.04993 -10.98908 -10.77473 -10.20032 -9.91450 -9.65822 -9.00059 -7.93497 -5.23361 -0.48451 -0.19773 0.82246 1.45495 1.46581 1.47993 1.56299 1.83005 2.34148 2.54487 2.92447 2.95299 3.27203 3.39856 3.63430 3.67156 3.76471 3.81894 3.92324 4.10476 4.11673 4.14433 4.23862 4.27357 4.41186 4.45615 4.53686 4.67049 4.72378 4.82587 4.84308 4.87211 4.91835 4.97350 5.08224 5.12470 5.24404 5.35799 5.42976 5.48695 5.56400 6.25334 6.28439 6.99176 7.32822 8.07314 8.30751 9.29362 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.007831 B = 0.004698 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.663509 B = 5958.925677 C = 8340.094023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.581 5.581 3 C 0.556 3.444 4 O -0.574 6.574 5 C -0.093 4.093 6 C -0.112 4.112 7 C 0.111 3.889 8 F -0.123 7.123 9 C -0.116 4.116 10 C -0.017 4.017 11 Cl -0.047 7.047 12 C -0.077 4.077 13 C 0.168 3.832 14 H 0.070 0.930 15 C 0.144 3.856 16 N -0.741 5.741 17 C -0.241 4.241 18 H 0.078 0.922 19 C -0.073 4.073 20 N -0.965 5.965 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.298 1.298 24 H -0.294 1.294 25 C -0.163 4.163 26 C -0.167 4.167 27 C -0.171 4.171 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.126 0.874 34 H 0.045 0.955 35 H 0.029 0.971 36 H 0.370 0.630 37 H 0.249 0.751 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 4.351 -15.933 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.311 5.311 3 C 0.345 3.655 4 O -0.454 6.454 5 C -0.096 4.096 6 C -0.131 4.131 7 C 0.092 3.908 8 F -0.101 7.101 9 C -0.136 4.136 10 C -0.044 4.044 11 Cl -0.017 7.017 12 C -0.097 4.097 13 C 0.064 3.936 14 H 0.089 0.911 15 C 0.017 3.983 16 N -0.384 5.384 17 C -0.373 4.373 18 H 0.096 0.904 19 C -0.266 4.266 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.221 1.221 25 C -0.183 4.183 26 C -0.204 4.204 27 C -0.208 4.208 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.195 0.805 32 H 0.194 0.806 33 H 0.144 0.856 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.202 0.798 37 H 0.057 0.943 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.796 4.287 -15.803 18.587 hybrid contribution 0.435 0.340 1.458 1.559 sum -8.361 4.628 -14.345 17.237 Atomic orbital electron populations 1.22310 0.77655 1.04304 1.02933 1.47575 1.08243 1.04522 1.70773 1.18433 0.86623 0.84387 0.76042 1.90764 1.15257 1.87602 1.51803 1.19462 0.95886 0.93814 1.00470 1.21831 0.92981 0.98161 1.00155 1.17107 0.83652 0.94092 0.95968 1.91562 1.43611 1.95791 1.79129 1.21346 0.94728 1.01023 0.96453 1.20403 0.95558 0.90291 0.98098 1.98395 1.86122 1.47378 1.69848 1.21118 1.00122 0.91144 0.97335 1.20694 0.96264 0.82546 0.94091 0.91137 1.21295 0.98573 0.93156 0.85228 1.42512 1.78745 1.15618 1.01513 1.19621 1.34829 0.98149 0.84682 0.90374 1.25541 1.02817 0.96767 1.01430 1.69852 1.52806 1.10146 1.28756 0.85121 0.76690 0.77977 0.80244 1.18776 1.22544 1.22077 1.22392 1.07657 0.90450 0.97778 1.23225 0.94386 0.99167 1.03574 1.23048 0.96263 0.98040 1.03471 0.88612 0.90260 0.91141 0.80457 0.80597 0.85583 0.93708 0.95349 0.79819 0.94252 0.86310 0.88802 0.86400 0.86661 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.66 8.22 127.77 1.05 2.71 16 2 N -0.58 -18.52 2.24 -825.99 -1.85 -20.38 16 3 C 0.56 20.40 7.06 86.79 0.61 21.01 16 4 O -0.57 -25.72 16.25 -3.89 -0.06 -25.78 16 5 C -0.09 -2.85 5.24 -20.10 -0.11 -2.95 16 6 C -0.11 -2.52 7.53 22.58 0.17 -2.35 16 7 C 0.11 2.29 7.29 22.33 0.16 2.46 16 8 F -0.12 -2.31 17.26 44.97 0.78 -1.53 16 9 C -0.12 -2.41 9.80 22.39 0.22 -2.19 16 10 C -0.02 -0.43 6.31 22.28 0.14 -0.29 16 11 Cl -0.05 -1.16 28.95 -2.72 -0.08 -1.23 16 12 C -0.08 -2.47 9.41 22.55 0.21 -2.26 16 13 C 0.17 5.59 2.58 44.99 0.12 5.70 16 14 H 0.07 2.86 6.91 -2.39 -0.02 2.84 16 15 C 0.14 5.55 4.15 86.38 0.36 5.91 16 16 N -0.74 -37.81 5.43 -343.44 -1.87 -39.68 16 17 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 20 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 21 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 C -0.16 -3.87 5.48 -10.80 -0.06 -3.93 16 26 C -0.17 -3.28 9.59 30.62 0.29 -2.99 16 27 C -0.17 -3.59 9.94 30.62 0.30 -3.29 16 28 H 0.10 1.48 6.89 -2.38 -0.02 1.46 16 29 H 0.08 1.96 6.53 -2.39 -0.02 1.95 16 30 H 0.07 1.76 5.81 -2.39 -0.01 1.74 16 31 H 0.18 3.00 5.31 -2.91 -0.02 2.98 16 32 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.13 4.64 8.05 -2.91 -0.02 4.61 16 34 H 0.05 1.60 5.33 -2.39 -0.01 1.59 16 35 H 0.03 1.12 7.44 -2.38 -0.02 1.10 16 36 H 0.37 20.96 7.06 -92.71 -0.65 20.30 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.09 2.13 5.80 -2.39 -0.01 2.11 16 40 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 2.02 7.66 -2.39 -0.02 2.00 16 Total: -1.00 -71.35 363.58 4.43 -66.92 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.43 Total: 31.73 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 4.78 Total: 1.28 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -3.44 Total: -119.78 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.53 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.23 kcal Total: -71.35 4.43 -66.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571368501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.266 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds