Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99871 * 2 1 4 4 O 1.21555 * 120.00009 * 186.97055 * 3 2 1 5 5 C 1.47857 * 120.00352 * 6.97343 * 3 2 1 6 6 C 1.39565 * 120.12865 * 200.61134 * 5 3 2 7 7 C 1.38177 * 119.85306 * 179.97438 * 6 5 3 8 8 F 1.35105 * 119.94449 * 179.97438 * 7 6 5 9 9 C 1.38570 * 120.10747 * 0.02562 * 7 6 5 10 10 C 1.38402 * 120.25500 * 359.97438 * 9 7 6 11 11 Cl 1.73598 * 119.92743 * 179.97438 * 10 9 7 12 12 C 1.38118 * 120.14864 * 359.73342 * 10 9 7 13 13 C 1.46495 * 120.00025 * 180.02562 * 2 1 3 14 14 H 1.09003 * 109.47277 * 179.97438 * 13 2 1 15 15 C 1.53007 * 109.47206 * 60.00055 * 13 2 1 16 16 N 1.46494 * 109.47077 * 54.99760 * 15 13 2 17 17 C 1.36941 * 119.99864 * 179.72576 * 16 15 13 18 18 H 1.08000 * 119.99867 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99647 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00507 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99635 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47605 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47413 * 119.99986 * 21 19 17 24 24 H 1.48500 * 109.47403 * 239.99570 * 21 19 17 25 25 C 1.53002 * 109.47298 * 300.00085 * 13 2 1 26 26 C 1.53000 * 117.49810 * 248.74980 * 25 13 2 27 27 C 1.52998 * 117.50183 * 180.08441 * 25 13 2 28 28 H 1.09001 * 109.46963 * 265.93110 * 1 2 3 29 29 H 1.08998 * 109.47013 * 25.92812 * 1 2 3 30 30 H 1.09001 * 109.47247 * 145.92817 * 1 2 3 31 31 H 1.08002 * 120.07478 * 359.95209 * 6 5 3 32 32 H 1.08003 * 119.87148 * 179.97438 * 9 7 6 33 33 H 1.07995 * 120.05618 * 180.27630 * 12 10 9 34 34 H 1.09007 * 109.46818 * 294.99840 * 15 13 2 35 35 H 1.09002 * 109.47129 * 175.00140 * 15 13 2 36 36 H 0.97000 * 119.99938 * 0.02562 * 16 15 13 37 37 H 0.97005 * 120.00543 * 179.97438 * 20 19 17 38 38 H 1.08997 * 115.55006 * 34.41283 * 25 13 2 39 39 H 1.08998 * 117.50086 * 359.97438 * 26 25 13 40 40 H 1.08994 * 117.49862 * 145.01798 * 26 25 13 41 41 H 1.08994 * 117.50174 * 214.97578 * 27 25 13 42 42 H 1.09003 * 117.49514 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3477 1.1711 -0.1278 5 6 1.4078 2.4430 0.1555 6 6 1.9916 3.6402 -0.2613 7 6 1.3032 4.8291 -0.1138 8 9 1.8668 5.9892 -0.5161 9 6 0.0360 4.8336 0.4470 10 6 -0.5472 3.6490 0.8618 11 17 -2.1348 3.6645 1.5639 12 6 0.1291 2.4538 0.7139 13 6 2.1975 -1.2687 -0.0006 14 1 3.2692 -1.0695 -0.0009 15 6 1.8279 -2.0705 -1.2502 16 7 2.0706 -1.2553 -2.4429 17 6 1.8160 -1.7687 -3.6866 18 1 1.4367 -2.7748 -3.7882 19 6 2.0466 -0.9964 -4.8168 20 7 2.5093 0.2295 -4.6931 21 14 1.6986 -1.6966 -6.5133 22 1 1.1880 -3.0847 -6.3808 23 1 0.6812 -0.8575 -7.1961 24 1 2.9505 -1.7043 -7.3120 25 6 1.8279 -2.0716 1.2483 26 6 2.9087 -2.2554 2.3155 27 6 2.4943 -3.4362 1.4338 28 1 -0.3633 -0.0729 1.0251 29 1 -0.3633 0.9242 -0.4493 30 1 -0.3634 -0.8512 -0.5757 31 1 2.9795 3.6375 -0.6977 32 1 -0.4985 5.7651 0.5609 33 1 -0.3292 1.5298 1.0340 34 1 0.7741 -2.3459 -1.2066 35 1 2.4376 -2.9728 -1.2965 36 1 2.4158 -0.3533 -2.3519 37 1 2.6707 0.7690 -5.4829 38 1 0.7980 -1.9641 1.5885 39 1 3.8833 -1.8048 2.1277 40 1 2.5898 -2.2694 3.3576 41 1 1.9031 -4.2264 1.8963 42 1 3.1958 -3.7622 0.6658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571368502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = 6.803819 kcal Electronic energy + Delta-G solvation = -27581.351097 eV Core-core repulsion = 23504.266544 eV Total energy + Delta-G solvation = -4077.084552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.08367 -40.59708 -38.76689 -37.49378 -36.62168 -35.36604 -34.18816 -31.84820 -31.02492 -30.55769 -28.17450 -27.00332 -24.66665 -23.68730 -22.90862 -22.45505 -21.58894 -20.62364 -19.31400 -17.96545 -17.19335 -17.08303 -16.68299 -16.28179 -15.90464 -15.73600 -15.20317 -15.00234 -14.69338 -14.53120 -14.03172 -13.66673 -13.58189 -13.53087 -13.18507 -13.06073 -12.95558 -12.59666 -12.17896 -11.78805 -11.68178 -11.53210 -11.47675 -11.39367 -11.16881 -11.07842 -10.85275 -10.72003 -10.40502 -10.11822 -9.85466 -9.69954 -9.66759 -9.21303 -8.91484 -8.87641 -8.38022 -6.90555 -5.73510 -3.03266 0.49006 0.77652 1.71310 2.69796 2.99893 3.43538 3.48788 3.51489 3.54698 3.87814 4.01773 4.29019 4.56533 4.60111 4.71734 4.77826 4.86593 4.99475 5.05523 5.06451 5.22513 5.32230 5.46007 5.47022 5.57155 5.67504 5.68795 5.70523 5.78654 5.83322 5.92836 5.94665 5.97971 6.18727 6.20784 6.28603 6.40729 6.46218 6.67514 6.88872 7.54648 7.70761 8.32566 8.43818 9.55606 10.13489 10.48735 11.48567 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008256 B = 0.004214 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.680512 B = 6642.644002 C = 8364.126743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.584 5.584 3 C 0.563 3.437 4 O -0.522 6.522 5 C -0.079 4.079 6 C -0.086 4.086 7 C 0.107 3.893 8 F -0.129 7.129 9 C -0.129 4.129 10 C -0.020 4.020 11 Cl -0.056 7.056 12 C -0.111 4.111 13 C 0.163 3.837 14 H 0.103 0.897 15 C 0.148 3.852 16 N -0.729 5.729 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.928 5.928 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.160 4.160 26 C -0.179 4.179 27 C -0.169 4.169 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.022 0.978 35 H 0.030 0.970 36 H 0.387 0.613 37 H 0.254 0.746 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 4.454 17.219 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.316 5.316 3 C 0.351 3.649 4 O -0.398 6.398 5 C -0.082 4.082 6 C -0.106 4.106 7 C 0.087 3.913 8 F -0.107 7.107 9 C -0.148 4.148 10 C -0.047 4.047 11 Cl -0.027 7.027 12 C -0.130 4.130 13 C 0.060 3.940 14 H 0.121 0.879 15 C 0.019 3.981 16 N -0.373 5.373 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.179 4.179 26 C -0.216 4.216 27 C -0.206 4.206 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.040 0.960 35 H 0.048 0.952 36 H 0.221 0.779 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.057 4.373 17.051 18.965 hybrid contribution -0.296 0.241 -1.089 1.154 sum -7.353 4.614 15.962 18.170 Atomic orbital electron populations 1.22376 0.80166 1.04905 1.00452 1.47387 1.06712 1.05341 1.72112 1.17926 0.86969 0.83037 0.76978 1.90810 1.13643 1.86594 1.48770 1.19701 0.94065 0.94032 1.00434 1.21394 1.01586 0.89749 0.97884 1.17232 0.92131 0.81914 1.00033 1.91551 1.84663 1.46186 1.88337 1.21101 0.94485 0.98944 1.00300 1.20431 0.88623 0.94055 1.01553 1.98388 1.23012 1.98864 1.82416 1.22303 0.93628 0.98683 0.98339 1.20990 0.97814 0.81859 0.93362 0.87921 1.20931 0.97857 0.93537 0.85767 1.42322 1.78918 1.15774 1.00318 1.19235 1.36483 0.97903 0.83602 0.91210 1.24740 1.02022 0.96275 0.97737 1.69692 1.51038 1.08611 1.28275 0.86158 0.77408 0.77950 0.84894 1.20588 1.21931 1.21886 1.22525 0.98100 0.99565 0.97716 1.23030 0.99677 1.02975 0.95927 1.22931 1.03707 0.91092 1.02902 0.92477 0.89805 0.89812 0.82608 0.83414 0.81451 0.95993 0.95191 0.77890 0.93593 0.87626 0.88658 0.89108 0.88777 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 7.70 59.85 0.46 1.26 16 2 N -0.58 -9.24 2.24 -175.04 -0.39 -9.64 16 3 C 0.56 9.91 7.22 -12.32 -0.09 9.82 16 4 O -0.52 -11.01 15.88 5.32 0.08 -10.92 16 5 C -0.08 -1.16 5.57 -104.98 -0.58 -1.74 16 6 C -0.09 -1.26 9.57 -39.11 -0.37 -1.63 16 7 C 0.11 1.36 7.29 -39.48 -0.29 1.07 16 8 F -0.13 -1.68 17.26 2.25 0.04 -1.64 16 9 C -0.13 -1.39 9.80 -39.40 -0.39 -1.78 16 10 C -0.02 -0.21 6.31 -39.56 -0.25 -0.46 16 11 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 12 C -0.11 -1.30 7.39 -39.14 -0.29 -1.59 16 13 C 0.16 2.67 2.42 -67.93 -0.16 2.51 16 14 H 0.10 1.94 6.68 -51.93 -0.35 1.60 16 15 C 0.15 2.88 5.26 -4.04 -0.02 2.86 16 16 N -0.73 -18.48 5.43 -59.90 -0.33 -18.80 16 17 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 21 Si 0.90 22.53 29.55 -169.99 -5.02 17.51 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 C -0.16 -1.99 5.21 -90.62 -0.47 -2.46 16 26 C -0.18 -2.03 10.18 -26.69 -0.27 -2.30 16 27 C -0.17 -1.90 9.80 -26.69 -0.26 -2.16 16 28 H 0.06 0.52 6.81 -51.93 -0.35 0.17 16 29 H 0.08 1.05 5.21 -51.93 -0.27 0.78 16 30 H 0.08 1.13 6.55 -51.93 -0.34 0.79 16 31 H 0.16 2.40 7.79 -52.49 -0.41 1.99 16 32 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.17 1.66 4.04 -52.49 -0.21 1.45 16 34 H 0.02 0.42 6.91 -51.93 -0.36 0.06 16 35 H 0.03 0.59 7.48 -51.93 -0.39 0.21 16 36 H 0.39 10.69 7.06 -40.82 -0.29 10.40 16 37 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.11 1.16 7.32 -51.93 -0.38 0.78 16 39 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.21 7.67 -51.93 -0.40 0.81 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -32.59 364.96 -9.11 -41.70 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.98 Total: 10.08 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.24 Total: -3.93 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.01 Total: -56.27 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.59 -9.11 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571368502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.502 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds