Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 120.00157 * 2 1 4 4 O 1.21577 * 120.00278 * 185.55874 * 3 2 1 5 5 C 1.47619 * 119.99918 * 5.55727 * 3 2 1 6 6 C 1.39892 * 120.17574 * 269.95056 * 5 3 2 7 7 F 1.35102 * 120.10454 * 359.97438 * 6 5 3 8 8 C 1.38237 * 119.79153 * 180.02562 * 6 5 3 9 9 C 1.38294 * 120.15517 * 0.02562 * 8 6 5 10 10 C 1.38351 * 120.36055 * 359.97438 * 9 8 6 11 11 C 1.38078 * 120.20240 * 359.72201 * 10 9 8 12 12 Cl 1.73596 * 120.07421 * 180.27688 * 11 10 9 13 13 C 1.46500 * 120.00404 * 180.02562 * 2 1 3 14 14 H 1.08999 * 109.47671 * 183.21983 * 13 2 1 15 15 C 1.53002 * 109.47054 * 63.21961 * 13 2 1 16 16 N 1.46500 * 109.46825 * 54.60281 * 15 13 2 17 17 C 1.36940 * 119.99868 * 185.85893 * 16 15 13 18 18 H 1.08007 * 119.99772 * 1.49312 * 17 16 15 19 19 C 1.38812 * 120.00110 * 181.48988 * 17 16 15 20 20 N 1.31618 * 119.99782 * 187.30672 * 19 17 16 21 21 Si 1.86796 * 119.99793 * 7.31209 * 19 17 16 22 22 H 1.48497 * 109.47608 * 88.36380 * 21 19 17 23 23 H 1.48508 * 109.46919 * 208.36345 * 21 19 17 24 24 H 1.48501 * 109.47339 * 328.35700 * 21 19 17 25 25 C 1.53000 * 109.46846 * 303.22596 * 13 2 1 26 26 C 1.53005 * 117.49482 * 248.74543 * 25 13 2 27 27 C 1.52999 * 117.49714 * 180.08618 * 25 13 2 28 28 H 1.08993 * 109.46885 * 270.00137 * 1 2 3 29 29 H 1.09000 * 109.46698 * 29.99854 * 1 2 3 30 30 H 1.08999 * 109.46925 * 149.99970 * 1 2 3 31 31 H 1.08001 * 119.92339 * 179.97438 * 8 6 5 32 32 H 1.08002 * 119.81837 * 180.02562 * 9 8 6 33 33 H 1.08002 * 119.89514 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47130 * 174.60338 * 15 13 2 35 35 H 1.09002 * 109.47408 * 294.60791 * 15 13 2 36 36 H 0.96995 * 120.00331 * 5.86129 * 16 15 13 37 37 H 0.97009 * 119.99647 * 180.02562 * 20 19 17 38 38 H 1.09001 * 115.55428 * 34.41174 * 25 13 2 39 39 H 1.09000 * 117.50114 * 359.97438 * 26 25 13 40 40 H 1.08999 * 117.49731 * 145.01948 * 26 25 13 41 41 H 1.09007 * 117.49805 * 214.97465 * 27 25 13 42 42 H 1.08999 * 117.49899 * 359.97150 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3504 1.1697 -0.1020 5 6 1.4061 2.4427 0.1238 6 6 0.9565 3.1093 -1.0209 7 9 1.1919 2.5882 -2.2450 8 6 0.2714 4.3034 -0.8958 9 6 0.0312 4.8386 0.3566 10 6 0.4730 4.1847 1.4929 11 6 1.1532 2.9879 1.3855 12 17 1.6998 2.1666 2.8139 13 6 2.1976 -1.2687 -0.0006 14 1 3.2678 -1.0704 0.0572 15 6 1.8898 -2.0348 -1.2887 16 7 2.1807 -1.1831 -2.4447 17 6 1.8686 -1.6122 -3.7071 18 1 1.3859 -2.5680 -3.8486 19 6 2.1723 -0.8188 -4.8048 20 7 1.7462 -1.1609 -6.0022 21 14 3.1861 0.7344 -4.5826 22 1 4.6295 0.4033 -4.6917 23 1 2.8228 1.7174 -5.6349 24 1 2.9116 1.3175 -3.2447 25 6 1.7681 -2.1061 1.2058 26 6 2.7959 -2.3206 2.3187 27 6 2.4258 -3.4758 1.3850 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.0763 4.8201 -1.7782 32 1 -0.5049 5.7717 0.4480 33 1 0.2816 4.6096 2.4672 34 1 2.5068 -2.9321 -1.3340 35 1 0.8369 -2.3167 -1.3011 36 1 2.5945 -0.3154 -2.3159 37 1 1.9588 -0.6066 -6.7694 38 1 0.7227 -2.0075 1.4983 39 1 3.7782 -1.8655 2.1913 40 1 2.4266 -2.3636 3.3433 41 1 1.8131 -4.2784 1.7959 42 1 3.1641 -3.7806 0.6433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571370721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -28.794786 kcal Electronic energy + Delta-G solvation = -28666.884630 eV Core-core repulsion = 24588.256407 eV Total energy + Delta-G solvation = -4078.628224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.20887 -41.60502 -39.91629 -38.70794 -37.62362 -36.72880 -35.92245 -33.61508 -32.48883 -31.63684 -30.16330 -27.96541 -26.28180 -24.93073 -23.95509 -23.60964 -22.86090 -21.75544 -20.69269 -19.60838 -19.11977 -18.47415 -18.02163 -17.92257 -16.94611 -16.69541 -16.39637 -16.33450 -16.00145 -15.78990 -15.53015 -15.08967 -14.94455 -14.81771 -14.50354 -14.32792 -14.15068 -13.77119 -13.63343 -13.35009 -13.24080 -13.02356 -12.90168 -12.75603 -12.50573 -12.41219 -12.28021 -12.20002 -12.05838 -11.89917 -11.48780 -11.13523 -11.03540 -10.95027 -10.16356 -9.91434 -9.75316 -9.34615 -8.10825 -5.39915 -0.34404 -0.17119 0.81554 1.25607 1.26214 1.28455 1.40765 1.77599 2.24283 2.39075 2.83551 3.00686 3.19920 3.21694 3.43427 3.69198 3.77358 3.89091 3.93510 4.05203 4.06857 4.11911 4.16438 4.24756 4.35416 4.46042 4.60789 4.62836 4.72493 4.78334 4.82266 4.86610 4.95328 4.99230 5.03845 5.06774 5.20002 5.27578 5.44793 5.54030 5.69863 6.13908 6.16552 6.87502 7.00899 7.79060 7.96440 9.10118 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.006333 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.992309 B = 4420.201981 C = 6675.671821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.581 5.581 3 C 0.562 3.438 4 O -0.573 6.573 5 C -0.172 4.172 6 C 0.102 3.898 7 F -0.146 7.146 8 C -0.144 4.144 9 C -0.041 4.041 10 C -0.107 4.107 11 C 0.009 3.991 12 Cl -0.046 7.046 13 C 0.167 3.833 14 H 0.072 0.928 15 C 0.149 3.851 16 N -0.758 5.758 17 C -0.222 4.222 18 H 0.069 0.931 19 C -0.046 4.046 20 N -0.973 5.973 21 Si 0.928 3.072 22 H -0.293 1.293 23 H -0.291 1.291 24 H -0.261 1.261 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.160 4.160 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.168 0.832 32 H 0.198 0.802 33 H 0.183 0.817 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.361 0.639 37 H 0.257 0.743 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 11.109 24.138 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.311 5.311 3 C 0.349 3.651 4 O -0.452 6.452 5 C -0.176 4.176 6 C 0.082 3.918 7 F -0.125 7.125 8 C -0.163 4.163 9 C -0.059 4.059 10 C -0.126 4.126 11 C -0.019 4.019 12 Cl -0.016 7.016 13 C 0.064 3.936 14 H 0.090 0.910 15 C 0.022 3.978 16 N -0.403 5.403 17 C -0.353 4.353 18 H 0.087 0.913 19 C -0.238 4.238 20 N -0.624 5.624 21 Si 0.758 3.242 22 H -0.220 1.220 23 H -0.217 1.217 24 H -0.187 1.187 25 C -0.183 4.183 26 C -0.206 4.206 27 C -0.198 4.198 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.186 0.814 32 H 0.215 0.785 33 H 0.201 0.799 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.194 0.806 37 H 0.066 0.934 38 H 0.146 0.854 39 H 0.097 0.903 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.727 10.826 24.021 27.457 hybrid contribution 1.185 0.399 -1.102 1.667 sum -6.542 11.224 22.919 26.345 Atomic orbital electron populations 1.21891 0.77613 1.03656 1.03083 1.47660 1.08195 1.04642 1.70579 1.18306 0.86667 0.84419 0.75676 1.90766 1.15545 1.87526 1.51413 1.19760 1.06036 0.98028 0.93823 1.18183 0.99934 0.95135 0.78507 1.91640 1.92586 1.86769 1.41492 1.21643 0.99294 0.93053 1.02287 1.21684 0.95214 1.00297 0.88667 1.21570 0.96778 0.91643 1.02587 1.20835 0.99695 0.95771 0.85567 1.98404 1.88433 1.78615 1.36184 1.20833 0.96257 0.82361 0.94188 0.90979 1.21135 0.99079 0.92845 0.84756 1.42799 1.75322 1.19501 1.02678 1.19036 1.30439 1.02539 0.83293 0.91283 1.25140 1.02534 1.00908 0.95221 1.69835 1.51841 1.41584 0.99135 0.85832 0.79076 0.81606 0.77662 1.22006 1.21743 1.18681 1.22370 0.99767 0.99553 0.96605 1.23038 0.98874 1.02564 0.96103 1.23034 1.03199 0.91304 1.02228 0.89362 0.92151 0.89997 0.81406 0.78453 0.79947 0.94428 0.93720 0.80602 0.93363 0.85435 0.90338 0.86693 0.86103 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 9.03 127.77 1.15 3.27 16 2 N -0.58 -19.56 2.32 -826.26 -1.92 -21.48 16 3 C 0.56 21.33 5.37 86.72 0.47 21.80 16 4 O -0.57 -26.63 16.46 -3.96 -0.07 -26.69 16 5 C -0.17 -5.28 4.07 -20.03 -0.08 -5.36 16 6 C 0.10 3.13 6.66 22.67 0.15 3.28 16 7 F -0.15 -5.98 15.57 44.97 0.70 -5.28 16 8 C -0.14 -2.71 10.01 22.28 0.22 -2.49 16 9 C -0.04 -0.44 10.03 22.31 0.22 -0.22 16 10 C -0.11 -1.41 9.81 22.26 0.22 -1.19 16 11 C 0.01 0.20 6.35 22.60 0.14 0.34 16 12 Cl -0.05 -1.00 28.04 -2.72 -0.08 -1.08 16 13 C 0.17 5.70 2.39 44.99 0.11 5.81 16 14 H 0.07 2.88 6.69 -2.39 -0.02 2.86 16 15 C 0.15 5.98 5.33 86.38 0.46 6.44 16 16 N -0.76 -39.15 5.18 -343.44 -1.78 -40.93 16 17 C -0.22 -13.36 10.46 84.03 0.88 -12.48 16 18 H 0.07 4.38 8.06 -2.91 -0.02 4.36 16 19 C -0.05 -2.87 5.50 84.86 0.47 -2.41 16 20 N -0.97 -64.72 13.97 21.65 0.30 -64.42 16 21 Si 0.93 51.84 27.88 68.60 1.91 53.76 16 22 H -0.29 -16.43 7.11 99.48 0.71 -15.73 16 23 H -0.29 -15.98 7.11 99.48 0.71 -15.28 16 24 H -0.26 -14.44 5.04 99.48 0.50 -13.93 16 25 C -0.16 -3.99 5.19 -10.79 -0.06 -4.04 16 26 C -0.17 -3.64 10.18 30.62 0.31 -3.33 16 27 C -0.16 -3.40 9.80 30.62 0.30 -3.10 16 28 H 0.09 1.73 8.06 -2.39 -0.02 1.71 16 29 H 0.06 1.67 6.52 -2.39 -0.02 1.65 16 30 H 0.08 2.22 6.71 -2.39 -0.02 2.20 16 31 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.20 0.21 8.06 -2.91 -0.02 0.19 16 33 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 34 H 0.04 1.51 7.49 -2.39 -0.02 1.49 16 35 H 0.04 1.72 7.00 -2.39 -0.02 1.71 16 36 H 0.36 19.52 4.87 -92.71 -0.45 19.07 16 37 H 0.26 16.40 8.31 -92.70 -0.77 15.63 16 38 H 0.13 2.61 7.31 -2.39 -0.02 2.60 16 39 H 0.08 1.96 8.05 -2.39 -0.02 1.94 16 40 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.09 2.08 7.67 -2.39 -0.02 2.07 16 Total: -1.00 -84.39 366.07 4.45 -79.94 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.40 Total: 19.87 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.97 Total: 6.31 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -3.40 Total: -126.83 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.07 Total: -26.69 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.70 Total: -5.28 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.91 Total: 53.76 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -84.39 4.45 -79.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571370721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.150 kcal (2) G-P(sol) polarization free energy of solvation -84.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds