Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.99713 * 2 1 4 4 C 1.54323 * 109.88496 * 238.90435 * 2 1 3 5 5 H 1.08996 * 110.72121 * 144.23844 * 4 2 1 6 6 N 1.46896 * 110.71793 * 21.13836 * 4 2 1 7 7 C 1.46907 * 110.99831 * 157.44221 * 6 4 2 8 8 C 1.50693 * 109.46912 * 179.97438 * 7 6 4 9 9 C 1.38433 * 122.53989 * 269.95178 * 8 7 6 10 10 C 1.33389 * 114.92022 * 180.02562 * 9 8 7 11 11 S 1.75889 * 109.59326 * 359.97438 * 10 9 8 12 12 C 1.33388 * 122.54245 * 89.97860 * 8 7 6 13 13 C 1.55163 * 103.10002 * 262.68547 * 4 2 1 14 14 C 1.54901 * 101.58128 * 324.58830 * 13 4 2 15 15 N 1.47325 * 109.84737 * 121.29715 * 2 1 3 16 16 C 1.34776 * 125.61713 * 300.41746 * 15 2 1 17 17 O 1.21276 * 119.99932 * 0.20650 * 16 15 2 18 18 C 1.50692 * 119.99875 * 180.19954 * 16 15 2 19 19 S 1.81000 * 109.47237 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00302 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00133 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99982 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00519 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47064 * 90.00565 * 24 22 20 26 26 H 1.48505 * 109.46861 * 209.99821 * 24 22 20 27 27 H 1.48496 * 109.47403 * 329.99946 * 24 22 20 28 28 H 1.08996 * 109.47118 * 181.09526 * 1 2 3 29 29 H 1.09003 * 109.47253 * 301.09848 * 1 2 3 30 30 H 1.09000 * 109.46465 * 61.09540 * 1 2 3 31 31 H 1.00904 * 110.99994 * 281.39482 * 6 4 2 32 32 H 1.09003 * 109.46771 * 60.00032 * 7 6 4 33 33 H 1.08992 * 109.46706 * 300.00186 * 7 6 4 34 34 H 1.07998 * 122.53579 * 0.04200 * 9 8 7 35 35 H 1.07995 * 125.20209 * 180.26467 * 10 9 8 36 36 H 1.08007 * 125.20125 * 359.95209 * 12 8 7 37 37 H 1.09003 * 110.99912 * 82.66326 * 13 4 2 38 38 H 1.08998 * 111.00526 * 206.47099 * 13 4 2 39 39 H 1.09005 * 110.36557 * 155.84658 * 14 13 4 40 40 H 1.09003 * 110.36942 * 278.16873 * 14 13 4 41 41 H 1.08998 * 109.47799 * 300.00347 * 18 16 15 42 42 H 1.08999 * 109.47484 * 60.00576 * 18 16 15 43 43 H 0.96994 * 120.00419 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 2.9640 -0.2813 -1.6200 6 7 1.0266 -0.8027 -2.2903 7 6 1.6324 -1.0086 -3.6127 8 6 0.5493 -1.0583 -4.6592 9 6 -0.0689 -2.2384 -5.0354 10 6 -1.0063 -2.1070 -5.9753 11 16 -1.1464 -0.4153 -6.4362 12 6 0.1138 0.0313 -5.2935 13 6 2.3555 -2.1701 -0.6957 14 6 2.8597 -1.8525 0.7341 15 7 2.0302 -0.7199 1.1841 16 6 1.7750 -0.3939 2.4667 17 8 1.0759 0.5639 2.7213 18 6 2.3581 -1.2195 3.5843 19 16 1.8365 -0.5342 5.1763 20 6 2.6379 -1.6585 6.2708 21 1 3.2318 -2.4682 5.8735 22 6 2.5058 -1.5036 7.6438 23 7 1.7823 -0.5164 8.1283 24 14 3.3548 -2.6961 8.8043 25 1 4.7128 -2.1895 9.1280 26 1 2.5619 -2.8201 10.0538 27 1 3.4648 -4.0264 8.1537 28 1 -0.3633 -1.0274 0.0196 29 1 -0.3634 0.5308 0.8800 30 1 -0.3632 0.4967 -0.8997 31 1 0.3433 -1.5178 -2.0903 32 1 2.1847 -1.9483 -3.6170 33 1 2.3130 -0.1861 -3.8324 34 1 0.1881 -3.1930 -4.6007 35 1 -1.5930 -2.9150 -6.3866 36 1 0.4788 1.0346 -5.1299 37 1 1.4502 -2.7765 -0.6651 38 1 3.1313 -2.6594 -1.2845 39 1 2.7138 -2.7127 1.3876 40 1 3.9114 -1.5668 0.7108 41 1 2.0058 -2.2474 3.4988 42 1 3.4460 -1.2018 3.5198 43 1 1.6897 -0.4084 9.0877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571451370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -14.000967 kcal Electronic energy + Delta-G solvation = -24066.982638 eV Core-core repulsion = 20557.252805 eV Total energy + Delta-G solvation = -3509.729833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31329 -39.53418 -38.61790 -35.64612 -34.59338 -32.73283 -31.88936 -30.67369 -29.56271 -27.67160 -27.05586 -25.73341 -23.98969 -23.49024 -21.56777 -20.22949 -19.62326 -19.51911 -18.48775 -18.05135 -17.29103 -16.93892 -16.88854 -16.41337 -16.12827 -15.76035 -15.27631 -15.12202 -14.56866 -14.50610 -14.43634 -13.87905 -13.80289 -13.73102 -13.60312 -13.46883 -13.22969 -13.12303 -13.04289 -12.91781 -12.89307 -12.63195 -12.51032 -12.34907 -11.84442 -11.76980 -11.64760 -11.53010 -11.14870 -10.82441 -10.28405 -9.67933 -9.66135 -9.41053 -9.17738 -8.68504 -8.35105 -6.13899 0.16687 0.82756 1.15300 1.23809 1.42194 1.44586 1.55654 1.60602 1.78226 2.10470 2.26919 2.98821 3.22931 3.28287 3.54463 3.62169 3.92690 4.05719 4.13944 4.17274 4.20658 4.25367 4.37330 4.42726 4.44400 4.47205 4.61827 4.69199 4.74087 4.78475 4.81201 4.87236 5.02148 5.10331 5.12265 5.20139 5.39020 5.40756 5.52251 5.56233 5.60976 6.06397 6.19038 6.42923 6.44833 7.05711 7.17278 8.74195 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.033549 B = 0.001823 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.401258 B =15356.139036 C =15676.502567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.139 3.861 3 H 0.060 0.940 4 C 0.098 3.902 5 H 0.110 0.890 6 N -0.676 5.676 7 C 0.123 3.877 8 C -0.110 4.110 9 C -0.137 4.137 10 C -0.219 4.219 11 S 0.077 5.923 12 C -0.200 4.200 13 C -0.148 4.148 14 C 0.091 3.909 15 N -0.615 5.615 16 C 0.545 3.455 17 O -0.563 6.563 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.257 1.257 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.089 0.911 31 H 0.349 0.651 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.153 0.847 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -7.181 -32.882 33.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.078 0.922 4 C -0.013 4.013 5 H 0.128 0.872 6 N -0.307 5.307 7 C -0.007 4.007 8 C -0.122 4.122 9 C -0.168 4.168 10 C -0.354 4.354 11 S 0.341 5.659 12 C -0.337 4.337 13 C -0.187 4.187 14 C -0.031 4.031 15 N -0.350 5.350 16 C 0.333 3.667 17 O -0.442 6.442 18 C -0.270 4.270 19 S 0.076 5.924 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.107 0.893 31 H 0.169 0.831 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.171 0.829 35 H 0.196 0.804 36 H 0.187 0.813 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.782 -4.181 -33.442 33.711 hybrid contribution 1.906 -2.867 1.913 3.939 sum 1.124 -7.048 -31.528 32.326 Atomic orbital electron populations 1.21808 0.94861 1.01528 1.01657 1.21636 0.95041 0.95561 0.84249 0.92230 1.22453 0.94735 0.94622 0.89472 0.87174 1.60395 1.15049 1.54572 1.00662 1.20597 0.93002 1.01781 0.85318 1.18975 1.00983 0.92272 1.00018 1.20328 0.97681 0.99740 0.99021 1.25857 1.05352 0.99525 1.04644 1.84412 1.37789 1.02623 1.41100 1.25708 1.02409 1.03353 1.02193 1.23486 1.03333 0.97457 0.94467 1.22574 0.95373 0.88499 0.96698 1.48621 1.51099 1.31534 1.03772 1.19734 0.79965 0.84140 0.82824 1.90676 1.39604 1.30328 1.83559 1.23304 1.04525 1.02802 0.96389 1.85603 1.68261 1.42729 0.95850 1.23188 1.36382 1.16111 0.93681 0.89919 1.26155 0.95818 0.97938 0.99306 1.70186 1.38930 1.31583 1.14076 0.84936 0.77974 0.78142 0.76811 1.19245 1.20279 1.18104 0.92927 0.95641 0.89260 0.83136 0.92359 0.89646 0.82918 0.80391 0.81254 0.90202 0.86759 0.90134 0.89561 0.87789 0.87689 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.22 71.98 0.59 -3.06 16 2 C 0.14 3.28 3.50 45.28 0.16 3.44 16 3 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.10 1.32 3.11 46.11 0.14 1.46 16 5 H 0.11 1.21 7.86 -2.39 -0.02 1.19 16 6 N -0.68 -8.17 4.80 -489.45 -2.35 -10.52 16 7 C 0.12 1.14 5.81 85.55 0.50 1.63 16 8 C -0.11 -1.29 5.31 -20.92 -0.11 -1.40 16 9 C -0.14 -1.49 9.98 21.22 0.21 -1.28 16 10 C -0.22 -2.42 11.23 66.72 0.75 -1.67 16 11 S 0.08 0.97 23.34 -56.49 -1.32 -0.35 16 12 C -0.20 -2.59 10.98 66.72 0.73 -1.86 16 13 C -0.15 -1.62 6.67 31.99 0.21 -1.40 16 14 C 0.09 1.61 6.69 86.85 0.58 2.20 16 15 N -0.61 -17.11 3.09 -787.35 -2.43 -19.54 16 16 C 0.55 21.57 7.65 87.65 0.67 22.24 16 17 O -0.56 -27.59 14.77 -3.02 -0.04 -27.63 16 18 C -0.12 -4.94 5.16 71.23 0.37 -4.57 16 19 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 20 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 28 H 0.05 1.27 7.93 -2.39 -0.02 1.26 16 29 H 0.02 0.87 6.77 -2.39 -0.02 0.85 16 30 H 0.09 2.04 7.40 -2.39 -0.02 2.02 16 31 H 0.35 4.27 7.65 -89.69 -0.69 3.58 16 32 H 0.06 0.38 8.13 -2.39 -0.02 0.36 16 33 H 0.09 0.75 8.06 -2.39 -0.02 0.73 16 34 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 35 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.08 0.90 7.79 -2.39 -0.02 0.88 16 38 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 1.44 7.48 -2.38 -0.02 1.42 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 3.92 7.85 -2.40 -0.02 3.91 16 42 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -77.94 379.75 1.25 -76.69 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.33 Total: 15.60 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 5.92 Total: -13.97 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -4.49 Total: -86.35 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -2.48 Total: -10.14 kcal Total: -77.94 1.25 -76.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571451370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.686 kcal (2) G-P(sol) polarization free energy of solvation -77.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds