Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99707 * 2 1 4 4 H 1.07996 * 120.00225 * 323.68936 * 3 2 1 5 5 C 1.38818 * 119.99670 * 143.69260 * 3 2 1 6 6 N 1.31616 * 120.00113 * 160.47229 * 5 3 2 7 7 Si 1.86800 * 119.99809 * 340.46622 * 5 3 2 8 8 H 1.48493 * 109.47213 * 95.24645 * 7 5 3 9 9 H 1.48504 * 109.47049 * 215.24615 * 7 5 3 10 10 H 1.48502 * 109.47464 * 335.24330 * 7 5 3 11 11 C 1.46491 * 119.99989 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47219 * 89.99967 * 11 2 1 13 13 H 1.09002 * 110.88787 * 302.57346 * 12 11 2 14 14 C 1.55156 * 111.00708 * 178.64771 * 12 11 2 15 15 C 1.54316 * 102.94458 * 206.42639 * 14 12 11 16 16 N 1.47025 * 107.27333 * 22.19185 * 15 14 12 17 17 C 1.34774 * 125.65039 * 181.02303 * 16 15 14 18 18 O 1.21574 * 120.00012 * 184.73897 * 17 16 15 19 19 C 1.47694 * 119.99894 * 4.74083 * 17 16 15 20 20 C 1.39651 * 120.16268 * 312.98444 * 19 17 16 21 21 C 1.37970 * 119.86750 * 179.76635 * 20 19 17 22 22 Cl 1.73596 * 119.90470 * 180.23011 * 21 20 19 23 23 C 1.38557 * 120.18795 * 0.48491 * 21 20 19 24 24 C 1.38193 * 120.32796 * 359.77237 * 23 21 20 25 25 C 1.38322 * 120.13135 * 359.97438 * 24 23 21 26 26 F 1.35099 * 120.09683 * 180.02562 * 25 24 23 27 27 C 1.47428 * 108.69979 * 1.06132 * 16 15 14 28 28 H 1.08996 * 109.47318 * 265.11283 * 1 2 3 29 29 H 1.08995 * 109.46749 * 145.10823 * 1 2 3 30 30 H 1.09000 * 109.47089 * 25.11023 * 1 2 3 31 31 H 0.96999 * 120.00351 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47443 * 209.99876 * 11 2 1 33 33 H 1.09000 * 109.47218 * 330.00412 * 11 2 1 34 34 H 1.09003 * 110.72119 * 324.79012 * 14 12 11 35 35 H 1.09005 * 110.71418 * 88.05786 * 14 12 11 36 36 H 1.09000 * 109.88135 * 262.77569 * 15 14 12 37 37 H 1.08995 * 109.88353 * 141.61092 * 15 14 12 38 38 H 1.08010 * 120.06601 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.84169 * 179.74236 * 23 21 20 40 40 H 1.07998 * 119.93509 * 179.97438 * 24 23 21 41 41 H 1.08994 * 110.36430 * 217.03206 * 27 16 15 42 42 H 1.09003 * 110.46038 * 94.75761 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7670 2.0304 -0.5538 5 6 3.3357 1.3027 0.7119 6 7 4.1837 2.2673 0.4243 7 14 3.7281 0.0906 2.0780 8 1 4.5774 -1.0026 1.5410 9 1 4.4537 0.7912 3.1680 10 1 2.4651 -0.4801 2.6114 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 1.5156 -1.8049 -1.9909 14 6 3.2574 -3.0368 -1.4829 15 6 3.9809 -2.9599 -2.8437 16 7 4.0445 -1.5413 -3.2248 17 6 4.5842 -1.0565 -4.3606 18 8 4.6591 0.1445 -4.5336 19 6 5.0846 -1.9843 -5.3951 20 6 5.8996 -3.0604 -5.0375 21 6 6.3597 -3.9262 -6.0082 22 17 7.3680 -5.2677 -5.5640 23 6 6.0237 -3.7249 -7.3373 24 6 5.2220 -2.6595 -7.7007 25 6 4.7490 -1.7863 -6.7378 26 9 3.9650 -0.7453 -7.0938 27 6 3.4208 -0.7370 -2.1582 28 1 -0.3634 -0.0875 1.0239 29 1 -0.3633 -0.8429 -0.5878 30 1 -0.3633 0.9305 -0.4361 31 1 5.0123 2.3491 0.9219 32 1 3.1499 -1.1381 0.5143 33 1 1.6084 -2.0281 0.5147 34 1 3.9771 -3.0766 -0.6652 35 1 2.5873 -3.8959 -1.4503 36 1 3.4218 -3.5203 -3.5930 37 1 4.9888 -3.3643 -2.7511 38 1 6.1658 -3.2171 -4.0025 39 1 6.3903 -4.4037 -8.0931 40 1 4.9643 -2.5083 -8.7385 41 1 2.8690 0.0993 -2.5873 42 1 4.1776 -0.3742 -1.4626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664818588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -21.065253 kcal Electronic energy + Delta-G solvation = -27694.230421 eV Core-core repulsion = 23615.937375 eV Total energy + Delta-G solvation = -4078.293046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.12768 -40.32924 -38.90356 -37.52419 -36.73389 -35.56171 -32.52178 -31.65984 -31.01044 -30.60252 -28.97524 -26.43710 -25.91496 -24.43758 -23.08265 -22.62462 -21.12979 -20.17537 -19.67937 -17.85886 -17.47718 -17.07159 -16.81060 -16.21416 -15.81862 -15.56779 -15.39001 -15.16799 -14.45394 -14.09549 -13.97803 -13.74688 -13.59167 -13.44097 -13.21959 -13.03804 -12.74621 -12.55318 -12.36733 -12.03587 -11.86049 -11.75789 -11.60687 -11.53463 -11.39252 -11.03125 -10.91581 -10.61865 -10.36288 -10.27775 -9.84013 -9.76166 -9.57202 -9.48932 -8.96425 -8.55498 -8.34027 -6.86297 -5.96676 -3.40170 0.37783 0.58672 1.65015 2.60395 2.99125 3.24034 3.25543 3.43946 3.47361 3.80245 4.13787 4.27349 4.48674 4.53733 4.70084 4.75371 4.83623 5.03862 5.12720 5.18725 5.32884 5.42159 5.45160 5.53174 5.55808 5.58826 5.71657 5.85948 5.92690 6.09792 6.15956 6.19949 6.26639 6.34725 6.43381 6.53644 6.66698 6.69836 6.80448 6.91586 7.70827 8.04060 8.26982 8.37761 8.96858 9.70253 10.09404 11.18290 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.003348 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.440483 B = 8361.784257 C = 8966.316079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.268 4.268 4 H 0.081 0.919 5 C 0.036 3.964 6 N -0.896 5.896 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.271 1.271 11 C 0.148 3.852 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.132 4.132 15 C 0.097 3.903 16 N -0.611 5.611 17 C 0.567 3.433 18 O -0.512 6.512 19 C -0.139 4.139 20 C -0.055 4.055 21 C -0.053 4.053 22 Cl -0.058 7.058 23 C -0.066 4.066 24 C -0.147 4.147 25 C 0.153 3.847 26 F -0.116 7.116 27 C 0.131 3.869 28 H 0.007 0.993 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.087 0.913 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -18.657 -13.870 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.337 5.337 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.537 5.537 7 Si 0.709 3.291 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.196 1.196 11 C 0.021 3.979 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.170 4.170 15 C -0.026 4.026 16 N -0.344 5.344 17 C 0.353 3.647 18 O -0.388 6.388 19 C -0.144 4.144 20 C -0.075 4.075 21 C -0.080 4.080 22 Cl -0.029 7.029 23 C -0.085 4.085 24 C -0.166 4.166 25 C 0.133 3.867 26 F -0.094 7.094 27 C 0.011 3.989 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.106 0.894 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.000 -17.907 -13.935 22.888 hybrid contribution 0.399 -0.652 0.776 1.089 sum 3.399 -18.559 -13.159 23.003 Atomic orbital electron populations 1.21064 0.84399 0.99129 0.97352 1.44071 1.00890 1.01915 1.86828 1.18814 1.04916 0.90251 1.25708 0.90154 1.25422 0.97125 0.96411 0.97556 1.69845 1.09411 1.33862 1.40628 0.86948 0.77889 0.80590 0.83640 1.21455 1.23082 1.19572 1.21129 0.96542 0.88109 0.92080 1.23055 0.97471 0.92752 1.00267 0.90508 1.22726 0.99490 0.99042 0.95787 1.22180 1.00280 0.82682 0.97425 1.48639 1.57917 1.08667 1.19211 1.17460 0.78920 0.87456 0.80865 1.90897 1.55196 1.14646 1.78015 1.20078 1.02864 0.98194 0.93254 1.21226 0.94729 0.91090 1.00409 1.20770 0.99716 0.93194 0.94347 1.98392 1.67209 1.44254 1.93045 1.21028 0.95941 0.96972 0.94512 1.21079 1.00269 0.95154 1.00067 1.17707 0.91634 0.85812 0.91559 1.91606 1.70926 1.54780 1.92087 1.22317 0.95582 0.93657 0.87348 0.97528 0.95559 0.93550 0.92691 0.92808 0.93564 0.90501 0.90177 0.91573 0.91682 0.83144 0.83493 0.83026 0.89438 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.44 10.70 59.85 0.64 3.08 16 2 N -0.61 -14.07 2.47 -181.12 -0.45 -14.52 16 3 C -0.27 -7.31 8.99 -15.06 -0.14 -7.44 16 4 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 5 C 0.04 1.00 5.24 -17.43 -0.09 0.91 16 6 N -0.90 -27.17 13.97 55.49 0.78 -26.40 16 7 Si 0.88 21.73 24.79 -169.99 -4.21 17.52 16 8 H -0.29 -6.73 6.71 56.52 0.38 -6.35 16 9 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 10 H -0.27 -6.56 7.10 56.52 0.40 -6.16 16 11 C 0.15 2.97 4.03 -4.04 -0.02 2.95 16 12 C -0.11 -1.96 3.29 -88.47 -0.29 -2.26 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.13 -1.74 6.42 -24.90 -0.16 -1.90 16 15 C 0.10 1.24 5.63 -3.07 -0.02 1.23 16 16 N -0.61 -10.56 3.33 -171.69 -0.57 -11.13 16 17 C 0.57 10.40 7.20 -12.40 -0.09 10.31 16 18 O -0.51 -11.80 16.85 5.30 0.09 -11.71 16 19 C -0.14 -1.94 5.43 -104.92 -0.57 -2.51 16 20 C -0.06 -0.61 8.30 -39.15 -0.32 -0.94 16 21 C -0.05 -0.49 6.31 -39.56 -0.25 -0.74 16 22 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.98 16 23 C -0.07 -0.50 9.82 -39.48 -0.39 -0.89 16 24 C -0.15 -1.29 10.01 -39.57 -0.40 -1.68 16 25 C 0.15 1.97 7.25 -38.96 -0.28 1.68 16 26 F -0.12 -1.77 16.44 2.25 0.04 -1.73 16 27 C 0.13 2.69 5.34 -2.53 -0.01 2.68 16 28 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.05 1.20 2.82 -51.93 -0.15 1.05 16 33 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.70 5.96 -51.93 -0.31 0.39 16 38 H 0.15 1.54 5.89 -52.48 -0.31 1.23 16 39 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.09 2.08 8.08 -51.93 -0.42 1.66 16 42 H 0.08 1.92 7.88 -51.93 -0.41 1.51 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -33.00 359.59 -8.18 -41.18 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.38 Total: -1.13 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.38 Total: 4.48 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.24 Total: -52.04 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.21 Total: 17.52 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.00 -8.18 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664818588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.115 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds