Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99707 * 2 1 4 4 H 1.07996 * 120.00225 * 323.68936 * 3 2 1 5 5 C 1.38818 * 119.99670 * 143.69260 * 3 2 1 6 6 N 1.31616 * 120.00113 * 160.47229 * 5 3 2 7 7 Si 1.86800 * 119.99809 * 340.46622 * 5 3 2 8 8 H 1.48493 * 109.47213 * 95.24645 * 7 5 3 9 9 H 1.48504 * 109.47049 * 215.24615 * 7 5 3 10 10 H 1.48502 * 109.47464 * 335.24330 * 7 5 3 11 11 C 1.46491 * 119.99989 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47219 * 89.99967 * 11 2 1 13 13 H 1.09002 * 110.88787 * 302.57346 * 12 11 2 14 14 C 1.55156 * 111.00708 * 178.64771 * 12 11 2 15 15 C 1.54316 * 102.94458 * 206.42639 * 14 12 11 16 16 N 1.47025 * 107.27333 * 22.19185 * 15 14 12 17 17 C 1.34774 * 125.65039 * 181.02303 * 16 15 14 18 18 O 1.21574 * 120.00012 * 184.73897 * 17 16 15 19 19 C 1.47694 * 119.99894 * 4.74083 * 17 16 15 20 20 C 1.39651 * 120.16268 * 312.98444 * 19 17 16 21 21 C 1.37970 * 119.86750 * 179.76635 * 20 19 17 22 22 Cl 1.73596 * 119.90470 * 180.23011 * 21 20 19 23 23 C 1.38557 * 120.18795 * 0.48491 * 21 20 19 24 24 C 1.38193 * 120.32796 * 359.77237 * 23 21 20 25 25 C 1.38322 * 120.13135 * 359.97438 * 24 23 21 26 26 F 1.35099 * 120.09683 * 180.02562 * 25 24 23 27 27 C 1.47428 * 108.69979 * 1.06132 * 16 15 14 28 28 H 1.08996 * 109.47318 * 265.11283 * 1 2 3 29 29 H 1.08995 * 109.46749 * 145.10823 * 1 2 3 30 30 H 1.09000 * 109.47089 * 25.11023 * 1 2 3 31 31 H 0.96999 * 120.00351 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47443 * 209.99876 * 11 2 1 33 33 H 1.09000 * 109.47218 * 330.00412 * 11 2 1 34 34 H 1.09003 * 110.72119 * 324.79012 * 14 12 11 35 35 H 1.09005 * 110.71418 * 88.05786 * 14 12 11 36 36 H 1.09000 * 109.88135 * 262.77569 * 15 14 12 37 37 H 1.08995 * 109.88353 * 141.61092 * 15 14 12 38 38 H 1.08010 * 120.06601 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.84169 * 179.74236 * 23 21 20 40 40 H 1.07998 * 119.93509 * 179.97438 * 24 23 21 41 41 H 1.08994 * 110.36430 * 217.03206 * 27 16 15 42 42 H 1.09003 * 110.46038 * 94.75761 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7670 2.0304 -0.5538 5 6 3.3357 1.3027 0.7119 6 7 4.1837 2.2673 0.4243 7 14 3.7281 0.0906 2.0780 8 1 4.5774 -1.0026 1.5410 9 1 4.4537 0.7912 3.1680 10 1 2.4651 -0.4801 2.6114 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 1.5156 -1.8049 -1.9909 14 6 3.2574 -3.0368 -1.4829 15 6 3.9809 -2.9599 -2.8437 16 7 4.0445 -1.5413 -3.2248 17 6 4.5842 -1.0565 -4.3606 18 8 4.6591 0.1445 -4.5336 19 6 5.0846 -1.9843 -5.3951 20 6 5.8996 -3.0604 -5.0375 21 6 6.3597 -3.9262 -6.0082 22 17 7.3680 -5.2677 -5.5640 23 6 6.0237 -3.7249 -7.3373 24 6 5.2220 -2.6595 -7.7007 25 6 4.7490 -1.7863 -6.7378 26 9 3.9650 -0.7453 -7.0938 27 6 3.4208 -0.7370 -2.1582 28 1 -0.3634 -0.0875 1.0239 29 1 -0.3633 -0.8429 -0.5878 30 1 -0.3633 0.9305 -0.4361 31 1 5.0123 2.3491 0.9219 32 1 3.1499 -1.1381 0.5143 33 1 1.6084 -2.0281 0.5147 34 1 3.9771 -3.0766 -0.6652 35 1 2.5873 -3.8959 -1.4503 36 1 3.4218 -3.5203 -3.5930 37 1 4.9888 -3.3643 -2.7511 38 1 6.1658 -3.2171 -4.0025 39 1 6.3903 -4.4037 -8.0931 40 1 4.9643 -2.5083 -8.7385 41 1 2.8690 0.0993 -2.5873 42 1 4.1776 -0.3742 -1.4626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664818588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -42.644749 kcal Electronic energy + Delta-G solvation = -27695.166178 eV Core-core repulsion = 23615.937375 eV Total energy + Delta-G solvation = -4079.228803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -50.16520 -41.56288 -39.92297 -38.97769 -37.46516 -37.26007 -34.02254 -33.40654 -32.21541 -31.44765 -30.28800 -28.10389 -27.65360 -25.60144 -24.05022 -23.73293 -22.86795 -21.55596 -20.97142 -18.90379 -18.86020 -18.51699 -17.99757 -17.35161 -17.28094 -16.90125 -16.77075 -16.37192 -15.76298 -15.54807 -15.28600 -14.99590 -14.75195 -14.61079 -14.49278 -14.36103 -14.22896 -13.93918 -13.73677 -13.55182 -13.32341 -13.13949 -12.73942 -12.65706 -12.56946 -12.38613 -12.15299 -12.12372 -11.97534 -11.78780 -11.63100 -11.29114 -11.22829 -10.63991 -10.42737 -9.84986 -9.73294 -8.78453 -8.16392 -5.56739 -0.49990 -0.19558 0.92489 1.26039 1.39103 1.40635 1.51266 1.77177 2.24579 2.40963 2.93434 3.02888 3.16441 3.35995 3.48298 3.64093 3.76879 3.83982 3.91063 3.96701 4.24344 4.29277 4.39481 4.51814 4.57405 4.59722 4.71512 4.73201 4.74425 4.77652 4.82995 4.88806 4.92964 5.01089 5.07325 5.13370 5.15008 5.23229 5.40125 5.41867 5.93443 6.16199 6.34848 6.86878 6.99147 7.64296 8.03018 9.03483 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.003348 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.440483 B = 8361.784257 C = 8966.316079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.628 5.628 3 C -0.253 4.253 4 H 0.030 0.970 5 C -0.022 4.022 6 N -0.954 5.954 7 Si 0.948 3.052 8 H -0.266 1.266 9 H -0.315 1.315 10 H -0.252 1.252 11 C 0.142 3.858 12 C -0.105 4.105 13 H 0.088 0.912 14 C -0.120 4.120 15 C 0.092 3.908 16 N -0.611 5.611 17 C 0.558 3.442 18 O -0.582 6.582 19 C -0.160 4.160 20 C -0.053 4.053 21 C -0.048 4.048 22 Cl -0.042 7.042 23 C -0.043 4.043 24 C -0.128 4.128 25 C 0.125 3.875 26 F -0.141 7.141 27 C 0.140 3.860 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.260 0.740 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.188 0.812 40 H 0.184 0.816 41 H 0.034 0.966 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 -24.681 -14.687 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.353 5.353 3 C -0.383 4.383 4 H 0.048 0.952 5 C -0.218 4.218 6 N -0.599 5.599 7 Si 0.777 3.223 8 H -0.193 1.193 9 H -0.245 1.245 10 H -0.176 1.176 11 C 0.016 3.984 12 C -0.126 4.126 13 H 0.107 0.893 14 C -0.158 4.158 15 C -0.029 4.029 16 N -0.343 5.343 17 C 0.348 3.652 18 O -0.462 6.462 19 C -0.165 4.165 20 C -0.072 4.072 21 C -0.075 4.075 22 Cl -0.013 7.013 23 C -0.062 4.062 24 C -0.147 4.147 25 C 0.105 3.895 26 F -0.120 7.120 27 C 0.017 3.983 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.173 0.827 39 H 0.205 0.795 40 H 0.201 0.799 41 H 0.052 0.948 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.031 -24.033 -14.750 28.361 hybrid contribution 0.366 1.199 0.886 1.535 sum 3.398 -22.834 -13.864 26.929 Atomic orbital electron populations 1.21171 0.82153 1.00100 0.98602 1.44220 1.02438 1.01505 1.87131 1.18573 1.04872 0.90954 1.23946 0.95245 1.26056 0.96974 0.98792 0.99987 1.70023 1.10259 1.37242 1.42340 0.85809 0.78453 0.78556 0.79483 1.19263 1.24473 1.17605 1.21298 0.95819 0.87462 0.93786 1.22900 0.97581 0.94092 0.98062 0.89342 1.22782 0.99509 0.97686 0.95800 1.22558 1.02442 0.79821 0.98115 1.48729 1.56904 1.10454 1.18239 1.18296 0.77859 0.87440 0.81653 1.90843 1.58059 1.17864 1.79463 1.19715 1.05447 0.99002 0.92310 1.21183 0.94198 0.90487 1.01304 1.20849 0.99179 0.92944 0.94564 1.98410 1.66642 1.43215 1.93066 1.21503 0.93724 0.96276 0.94674 1.21413 0.98885 0.93826 1.00566 1.18180 0.92730 0.86450 0.92128 1.91541 1.71910 1.56275 1.92227 1.21885 0.94837 0.93994 0.87546 0.96238 0.91918 0.94906 0.93136 0.94915 0.89547 0.90362 0.85652 0.88709 0.89158 0.82667 0.79462 0.79862 0.94778 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.66 10.70 127.77 1.37 6.03 16 2 N -0.63 -28.92 2.47 -726.95 -1.79 -30.71 16 3 C -0.25 -14.63 8.99 84.03 0.76 -13.88 16 4 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 5 C -0.02 -1.32 5.24 84.86 0.44 -0.88 16 6 N -0.95 -62.11 13.97 21.65 0.30 -61.81 16 7 Si 0.95 45.90 24.79 68.60 1.70 47.60 16 8 H -0.27 -11.83 6.71 99.48 0.67 -11.16 16 9 H -0.32 -15.79 7.11 99.48 0.71 -15.09 16 10 H -0.25 -11.33 7.10 99.48 0.71 -10.62 16 11 C 0.14 5.40 4.03 86.38 0.35 5.74 16 12 C -0.10 -3.48 3.29 -9.40 -0.03 -3.51 16 13 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 14 C -0.12 -2.67 6.42 31.78 0.20 -2.47 16 15 C 0.09 2.08 5.63 86.73 0.49 2.57 16 16 N -0.61 -21.78 3.33 -815.37 -2.71 -24.49 16 17 C 0.56 21.81 7.20 86.74 0.62 22.43 16 18 O -0.58 -29.68 16.85 -3.95 -0.07 -29.74 16 19 C -0.16 -4.47 5.43 -20.06 -0.11 -4.58 16 20 C -0.05 -1.05 8.30 22.55 0.19 -0.86 16 21 C -0.05 -0.70 6.31 22.28 0.14 -0.56 16 22 Cl -0.04 -0.53 28.95 -2.72 -0.08 -0.61 16 23 C -0.04 -0.46 9.82 22.34 0.22 -0.24 16 24 C -0.13 -1.83 10.01 22.28 0.22 -1.61 16 25 C 0.13 3.17 7.25 22.67 0.16 3.33 16 26 F -0.14 -4.54 16.44 44.97 0.74 -3.80 16 27 C 0.14 6.10 5.34 86.85 0.46 6.56 16 28 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 1.89 8.11 -2.39 -0.02 1.88 16 30 H 0.03 1.29 8.00 -2.39 -0.02 1.27 16 31 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 32 H 0.03 1.41 2.82 -2.39 -0.01 1.40 16 33 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 34 H 0.08 1.78 8.04 -2.39 -0.02 1.76 16 35 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.64 5.96 -2.39 -0.01 1.62 16 38 H 0.16 2.82 5.89 -2.91 -0.02 2.80 16 39 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.03 1.80 8.08 -2.39 -0.02 1.78 16 42 H 0.04 1.89 7.88 -2.39 -0.02 1.88 16 Total: -1.00 -83.85 359.59 4.59 -79.26 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.01 Total: 6.20 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 5.49 Total: 18.09 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -4.20 Total: -117.01 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.07 Total: -29.74 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.74 Total: -3.80 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.70 Total: 47.60 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -83.85 4.59 -79.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664818588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.612 kcal (2) G-P(sol) polarization free energy of solvation -83.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds