Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47378 * 2 1 4 4 C 1.52998 * 109.47150 * 240.00175 * 2 1 3 5 5 N 1.46899 * 109.47155 * 185.00499 * 4 2 1 6 6 C 1.46907 * 110.99821 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46969 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99978 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00302 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00137 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00492 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99694 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00351 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99684 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47056 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46756 * 120.00174 * 14 12 10 17 17 H 1.48499 * 109.47044 * 239.99956 * 14 12 10 18 18 N 1.46494 * 109.47223 * 120.00149 * 2 1 3 19 19 C 1.34778 * 120.00410 * 275.00298 * 18 2 1 20 20 O 1.21531 * 119.99393 * 359.97438 * 19 18 2 21 21 C 1.48103 * 120.00557 * 179.97438 * 19 18 2 22 22 C 1.39350 * 119.71039 * 180.02562 * 21 19 18 23 23 C 1.38525 * 119.07741 * 179.97438 * 22 21 19 24 24 C 1.38766 * 118.47635 * 0.25223 * 23 22 21 25 25 Cl 1.73605 * 120.33537 * 179.72715 * 24 23 22 26 26 C 1.38725 * 119.32617 * 359.47415 * 24 23 22 27 27 N 1.31482 * 120.87713 * 0.53855 * 26 24 23 28 28 H 1.09004 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47234 * 300.00057 * 1 2 3 30 30 H 1.09008 * 109.46992 * 59.99789 * 1 2 3 31 31 H 1.08997 * 109.47267 * 305.00105 * 4 2 1 32 32 H 1.08995 * 109.47395 * 64.99800 * 4 2 1 33 33 H 1.00895 * 111.00491 * 56.04587 * 5 4 2 34 34 H 1.09000 * 109.46916 * 299.99401 * 6 5 4 35 35 H 1.08989 * 109.47478 * 59.99698 * 6 5 4 36 36 H 0.97002 * 119.99585 * 359.97438 * 9 7 6 37 37 H 0.97003 * 119.99982 * 180.02562 * 13 12 10 38 38 H 0.97003 * 120.00225 * 94.99719 * 18 2 1 39 39 H 1.07997 * 120.46166 * 0.02562 * 22 21 19 40 40 H 1.08002 * 120.75688 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.55914 * 180.27645 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5040 -0.8267 -1.1904 6 6 4.0303 -1.5149 -2.3768 7 6 5.5317 -1.6035 -2.2813 8 8 6.1067 -1.1386 -1.3198 9 7 6.2355 -2.1992 -3.2642 10 6 7.6014 -2.2793 -3.1776 11 1 8.1134 -1.8654 -2.3215 12 6 8.3269 -2.8940 -4.1908 13 7 7.7039 -3.3980 -5.2323 14 14 10.1881 -3.0025 -4.0731 15 1 10.6423 -2.3637 -2.8119 16 1 10.6022 -4.4285 -4.0822 17 1 10.7990 -2.3022 -5.2313 18 7 2.0183 -0.6906 1.1961 19 6 2.1470 -0.0184 2.3572 20 8 1.8584 1.1609 2.4116 21 6 2.6402 -0.7167 3.5665 22 6 2.7704 -0.0158 4.7639 23 6 3.2324 -0.6820 5.8871 24 6 3.5539 -2.0271 5.7731 25 17 4.1439 -2.9072 7.1482 26 6 3.3940 -2.6626 4.5504 27 7 2.9533 -2.0049 3.5006 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7516 -0.1583 -2.1369 33 1 3.7995 -1.2885 -0.3433 34 1 3.6095 -2.5189 -2.4309 35 1 3.7559 -0.9571 -3.2720 36 1 5.7756 -2.5713 -4.0330 37 1 8.2104 -3.8275 -5.9394 38 1 2.2490 -1.6318 1.1526 39 1 2.5139 1.0320 4.8157 40 1 3.3441 -0.1652 6.8289 41 1 3.6389 -3.7104 4.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669450834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = -41.732547 kcal Electronic energy + Delta-G solvation = -25962.339669 eV Core-core repulsion = 21903.070384 eV Total energy + Delta-G solvation = -4059.269285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02064 -39.46081 -38.28933 -37.13927 -36.73611 -34.32390 -33.69735 -33.03749 -31.98238 -31.21407 -30.65261 -27.60670 -25.33528 -24.88804 -24.15280 -23.25349 -21.77485 -20.61884 -19.31018 -18.60403 -17.86642 -17.43582 -16.93998 -16.20121 -16.15909 -15.56003 -15.27482 -15.24532 -14.67812 -14.51034 -14.32256 -14.14773 -13.86848 -13.76848 -13.51353 -13.08507 -12.98651 -12.64809 -12.57643 -12.34446 -11.95315 -11.77942 -11.75285 -11.61042 -11.47075 -11.09359 -10.99779 -10.54087 -10.38623 -10.34023 -10.22184 -9.96776 -9.51704 -9.48098 -9.19716 -8.46645 -8.08456 -7.95687 -6.41604 -3.82217 0.06447 0.65867 1.48299 2.40225 2.85715 3.16604 3.27176 3.34690 3.42552 3.74018 3.91044 4.05195 4.18070 4.25928 4.32312 4.43607 4.65332 4.81070 5.00725 5.16195 5.20252 5.20268 5.26913 5.33959 5.39673 5.43241 5.54450 5.62119 5.77437 5.88055 5.91944 5.96821 6.04398 6.26189 6.34587 7.08269 7.15452 7.40032 7.55790 7.60555 7.98938 8.06865 8.61669 9.18449 9.54628 10.06218 10.76255 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.002526 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.338452 B =11081.585046 C =13535.334449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.700 5.700 19 C 0.576 3.424 20 O -0.530 6.530 21 C 0.086 3.914 22 C -0.099 4.099 23 C -0.072 4.072 24 C -0.072 4.072 25 Cl -0.047 7.047 26 C 0.117 3.883 27 N -0.440 5.440 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.349 0.651 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.409 0.591 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 1.003 18.417 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.301 5.301 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.351 5.351 19 C 0.361 3.639 20 O -0.405 6.405 21 C -0.053 4.053 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.101 4.101 25 Cl -0.018 7.018 26 C -0.044 4.044 27 N -0.152 5.152 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.245 0.755 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.545 2.216 17.940 23.841 hybrid contribution 0.757 -1.477 0.537 1.744 sum -14.788 0.739 18.477 23.677 Atomic orbital electron populations 1.22153 0.94760 1.02247 1.02857 1.21145 0.93610 0.98575 0.82907 0.88140 1.22304 0.88962 0.99077 0.97633 1.60022 1.07408 1.57614 1.05099 1.21689 0.95151 0.96993 0.94409 1.19807 0.88083 0.84249 0.85295 1.90535 1.71117 1.51423 1.33496 1.41864 1.07413 1.50904 1.19902 1.19751 0.81512 1.34933 1.06550 0.87898 1.25260 1.00680 0.96811 0.95221 1.69620 1.36599 1.38699 1.09451 0.85805 0.82266 0.77871 0.78448 1.19215 1.20771 1.20732 1.45852 1.65503 1.14631 1.09095 1.17674 0.77788 0.85936 0.82542 1.90798 1.50357 1.14772 1.84619 1.21355 0.98872 0.90434 0.94608 1.22155 0.96410 1.02342 0.91080 1.21585 0.95923 0.92252 1.00068 1.22377 1.02398 0.94219 0.91124 1.98408 1.86353 1.75360 1.41652 1.22853 0.94801 1.00796 0.85923 1.67706 1.09032 1.08067 1.30371 0.92407 0.91869 0.91152 0.94837 0.89277 0.83086 0.93794 0.89440 0.77469 0.91937 0.75531 0.82345 0.82898 0.80930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.60 2.88 -67.93 -0.20 1.41 16 3 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 4 C 0.05 0.58 5.30 -3.83 -0.02 0.56 16 5 N -0.67 -10.72 6.12 -115.06 -0.70 -11.43 16 6 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 7 C 0.44 10.45 7.82 -10.99 -0.09 10.37 16 8 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 9 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 14 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 N -0.70 -8.24 4.34 -54.67 -0.24 -8.48 16 19 C 0.58 7.55 7.77 -12.21 -0.09 7.46 16 20 O -0.53 -8.12 15.98 5.34 0.09 -8.03 16 21 C 0.09 0.99 6.75 -83.01 -0.56 0.43 16 22 C -0.10 -0.93 9.63 -39.06 -0.38 -1.31 16 23 C -0.07 -0.55 9.97 -39.28 -0.39 -0.94 16 24 C -0.07 -0.59 6.35 -39.21 -0.25 -0.84 16 25 Cl -0.05 -0.34 28.99 -51.86 -1.50 -1.85 16 26 C 0.12 1.06 10.98 -17.52 -0.19 0.87 16 27 N -0.44 -4.85 9.54 -9.77 -0.09 -4.94 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.35 5.90 7.28 -39.29 -0.29 5.62 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.39 8.14 -51.94 -0.42 0.97 16 36 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.41 4.51 7.48 -40.82 -0.31 4.20 16 39 H 0.16 1.34 7.64 -52.49 -0.40 0.94 16 40 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -33.43 374.70 -8.18 -41.62 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -2.09 Total: 9.72 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.37 Total: -63.09 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.97 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.43 -8.18 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669450834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.115 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds