Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47378 * 2 1 4 4 C 1.52998 * 109.47150 * 240.00175 * 2 1 3 5 5 N 1.46899 * 109.47155 * 185.00499 * 4 2 1 6 6 C 1.46907 * 110.99821 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46969 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99978 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00302 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00137 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00492 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99694 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00351 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99684 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47056 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46756 * 120.00174 * 14 12 10 17 17 H 1.48499 * 109.47044 * 239.99956 * 14 12 10 18 18 N 1.46494 * 109.47223 * 120.00149 * 2 1 3 19 19 C 1.34778 * 120.00410 * 275.00298 * 18 2 1 20 20 O 1.21531 * 119.99393 * 359.97438 * 19 18 2 21 21 C 1.48103 * 120.00557 * 179.97438 * 19 18 2 22 22 C 1.39350 * 119.71039 * 180.02562 * 21 19 18 23 23 C 1.38525 * 119.07741 * 179.97438 * 22 21 19 24 24 C 1.38766 * 118.47635 * 0.25223 * 23 22 21 25 25 Cl 1.73605 * 120.33537 * 179.72715 * 24 23 22 26 26 C 1.38725 * 119.32617 * 359.47415 * 24 23 22 27 27 N 1.31482 * 120.87713 * 0.53855 * 26 24 23 28 28 H 1.09004 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47234 * 300.00057 * 1 2 3 30 30 H 1.09008 * 109.46992 * 59.99789 * 1 2 3 31 31 H 1.08997 * 109.47267 * 305.00105 * 4 2 1 32 32 H 1.08995 * 109.47395 * 64.99800 * 4 2 1 33 33 H 1.00895 * 111.00491 * 56.04587 * 5 4 2 34 34 H 1.09000 * 109.46916 * 299.99401 * 6 5 4 35 35 H 1.08989 * 109.47478 * 59.99698 * 6 5 4 36 36 H 0.97002 * 119.99585 * 359.97438 * 9 7 6 37 37 H 0.97003 * 119.99982 * 180.02562 * 13 12 10 38 38 H 0.97003 * 120.00225 * 94.99719 * 18 2 1 39 39 H 1.07997 * 120.46166 * 0.02562 * 22 21 19 40 40 H 1.08002 * 120.75688 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.55914 * 180.27645 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5040 -0.8267 -1.1904 6 6 4.0303 -1.5149 -2.3768 7 6 5.5317 -1.6035 -2.2813 8 8 6.1067 -1.1386 -1.3198 9 7 6.2355 -2.1992 -3.2642 10 6 7.6014 -2.2793 -3.1776 11 1 8.1134 -1.8654 -2.3215 12 6 8.3269 -2.8940 -4.1908 13 7 7.7039 -3.3980 -5.2323 14 14 10.1881 -3.0025 -4.0731 15 1 10.6423 -2.3637 -2.8119 16 1 10.6022 -4.4285 -4.0822 17 1 10.7990 -2.3022 -5.2313 18 7 2.0183 -0.6906 1.1961 19 6 2.1470 -0.0184 2.3572 20 8 1.8584 1.1609 2.4116 21 6 2.6402 -0.7167 3.5665 22 6 2.7704 -0.0158 4.7639 23 6 3.2324 -0.6820 5.8871 24 6 3.5539 -2.0271 5.7731 25 17 4.1439 -2.9072 7.1482 26 6 3.3940 -2.6626 4.5504 27 7 2.9533 -2.0049 3.5006 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7516 -0.1583 -2.1369 33 1 3.7995 -1.2885 -0.3433 34 1 3.6095 -2.5189 -2.4309 35 1 3.7559 -0.9571 -3.2720 36 1 5.7756 -2.5713 -4.0330 37 1 8.2104 -3.8275 -5.9394 38 1 2.2490 -1.6318 1.1526 39 1 2.5139 1.0320 4.8157 40 1 3.3441 -0.1652 6.8289 41 1 3.6389 -3.7104 4.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669450834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -67.421705 kcal Electronic energy + Delta-G solvation = -25963.453635 eV Core-core repulsion = 21903.070384 eV Total energy + Delta-G solvation = -4060.383251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82992 -40.42044 -40.05700 -37.94201 -37.71881 -36.04624 -35.16636 -33.80063 -33.26038 -32.79765 -31.51381 -28.98090 -26.74306 -25.98243 -24.88509 -24.57645 -22.65283 -21.56532 -21.09732 -19.94293 -19.46874 -18.20739 -17.93549 -17.51562 -17.15542 -16.86002 -16.42344 -16.34963 -16.07202 -15.99090 -15.42088 -15.31632 -15.14880 -14.90912 -14.45182 -14.31853 -14.05177 -13.68338 -13.56687 -13.39488 -13.09774 -13.08011 -13.02322 -12.80217 -12.69050 -12.41330 -12.40713 -12.12330 -11.96057 -11.51988 -11.45947 -11.07292 -10.77727 -10.39259 -10.28078 -10.03862 -10.01615 -9.33696 -8.47278 -5.95751 -0.69939 -0.01957 0.82604 1.36084 1.41485 1.51991 1.55590 1.97848 2.05174 2.28802 2.61291 2.86344 2.99284 3.20187 3.48959 3.55031 3.60285 3.74365 3.85238 3.91841 4.19442 4.26449 4.36369 4.50416 4.53976 4.59098 4.64302 4.68070 4.74510 4.76666 4.79269 5.05014 5.21598 5.27553 5.40776 5.43866 5.86339 6.08573 6.24141 6.33701 6.55340 6.60154 7.03896 7.12700 7.56172 8.12046 8.70328 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.002526 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.338452 B =11081.585046 C =13535.334449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.074 0.926 4 C 0.055 3.945 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.572 5.572 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.275 1.275 16 H -0.269 1.269 17 H -0.271 1.271 18 N -0.695 5.695 19 C 0.571 3.429 20 O -0.562 6.562 21 C 0.061 3.939 22 C -0.101 4.101 23 C -0.063 4.063 24 C -0.069 4.069 25 Cl -0.034 7.034 26 C 0.109 3.891 27 N -0.456 5.456 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.341 0.659 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.412 0.588 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 0.087 18.582 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.092 0.908 4 C -0.074 4.074 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.200 1.200 16 H -0.194 1.194 17 H -0.196 1.196 18 N -0.346 5.346 19 C 0.356 3.644 20 O -0.440 6.440 21 C -0.076 4.076 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.099 4.099 25 Cl -0.006 7.006 26 C -0.052 4.052 27 N -0.168 5.168 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.181 0.819 40 H 0.200 0.800 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.182 1.277 18.069 24.289 hybrid contribution 0.934 -1.214 0.561 1.631 sum -15.248 0.063 18.630 24.075 Atomic orbital electron populations 1.22068 0.92635 1.03217 1.03086 1.21151 0.95136 0.97114 0.82761 0.90763 1.22389 0.86149 1.00625 0.98194 1.60008 1.10330 1.57585 1.04180 1.21558 0.90144 0.99192 0.95802 1.20955 0.90779 0.82157 0.83796 1.90503 1.72892 1.52794 1.35027 1.41922 1.06827 1.51576 1.20636 1.19672 0.83115 1.36803 1.06670 0.90584 1.26016 1.04828 0.95817 0.94513 1.69671 1.38189 1.38483 1.09701 0.84894 0.76993 0.78361 0.78233 1.19969 1.19426 1.19598 1.45882 1.64979 1.14734 1.08997 1.17998 0.77367 0.85725 0.83323 1.90764 1.51999 1.16020 1.85245 1.21265 1.00651 0.91038 0.94696 1.22281 0.96307 1.02650 0.90990 1.21889 0.94438 0.92052 1.00559 1.22455 1.01683 0.94516 0.91221 1.98416 1.86111 1.75139 1.40889 1.23207 0.94479 1.01610 0.85917 1.67645 1.09760 1.07985 1.31403 0.90992 0.93184 0.89379 0.92405 0.87704 0.83994 0.90991 0.87354 0.76869 0.91268 0.75097 0.81858 0.79982 0.79148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.48 71.98 0.68 -1.84 16 2 C 0.14 3.14 2.88 44.99 0.13 3.27 16 3 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 4 C 0.06 1.17 5.30 86.30 0.46 1.62 16 5 N -0.69 -21.46 6.12 -517.94 -3.17 -24.63 16 6 C 0.07 2.17 6.17 85.56 0.53 2.70 16 7 C 0.44 20.83 7.82 87.66 0.69 21.51 16 8 O -0.63 -35.41 15.78 -3.08 -0.05 -35.46 16 9 N -0.57 -29.39 5.29 -306.98 -1.62 -31.01 16 10 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 11 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 14 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 N -0.70 -16.50 4.34 -445.17 -1.93 -18.44 16 19 C 0.57 15.47 7.77 86.86 0.68 16.14 16 20 O -0.56 -17.97 15.98 -3.81 -0.06 -18.03 16 21 C 0.06 1.43 6.75 41.90 0.28 1.71 16 22 C -0.10 -1.89 9.63 22.61 0.22 -1.67 16 23 C -0.06 -0.88 9.97 22.46 0.22 -0.66 16 24 C -0.07 -1.05 6.35 22.51 0.14 -0.91 16 25 Cl -0.03 -0.45 28.99 -2.72 -0.08 -0.53 16 26 C 0.11 1.90 10.98 84.86 0.93 2.83 16 27 N -0.46 -10.06 9.54 -184.83 -1.76 -11.82 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.34 11.52 7.28 -89.70 -0.65 10.86 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 37 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.41 9.07 7.48 -92.71 -0.69 8.38 16 39 H 0.16 2.80 7.64 -2.91 -0.02 2.78 16 40 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -73.83 374.70 -1.10 -74.93 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.97 Total: 42.75 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: 6.24 Total: 26.29 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -8.20 Total: -135.11 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.11 Total: -53.50 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -73.83 -1.10 -74.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669450834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.505 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds