Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.28791 * 2 1 4 4 C 1.54007 * 110.32695 * 237.86561 * 2 1 3 5 5 N 1.47489 * 107.08171 * 239.80409 * 4 2 1 6 6 C 1.34777 * 127.03076 * 205.41586 * 5 4 2 7 7 O 1.21580 * 119.99919 * 174.74289 * 6 5 4 8 8 C 1.47648 * 120.00199 * 354.73738 * 6 5 4 9 9 C 1.39704 * 120.13076 * 323.29432 * 8 6 5 10 10 C 1.37772 * 119.89114 * 179.97438 * 9 8 6 11 11 C 1.38724 * 120.16009 * 359.97438 * 10 9 8 12 12 F 1.35095 * 119.87211 * 179.97438 * 11 10 9 13 13 C 1.38561 * 120.25722 * 0.02562 * 11 10 9 14 14 C 1.38033 * 120.10838 * 359.74141 * 13 11 10 15 15 Cl 1.73600 * 120.08016 * 180.25386 * 14 13 11 16 16 C 1.48111 * 105.93415 * 25.44608 * 5 4 2 17 17 C 1.54620 * 110.32611 * 122.24361 * 2 1 3 18 18 H 1.08999 * 110.73837 * 215.38226 * 17 2 1 19 19 C 1.53000 * 110.73602 * 338.70850 * 17 2 1 20 20 N 1.46505 * 109.46924 * 185.00004 * 19 17 2 21 21 C 1.36937 * 120.00197 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99509 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00010 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99844 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47119 * 90.00143 * 25 23 21 27 27 H 1.48501 * 109.46701 * 209.99633 * 25 23 21 28 28 H 1.48496 * 109.47394 * 330.00071 * 25 23 21 29 29 H 1.09004 * 109.47097 * 180.67607 * 1 2 3 30 30 H 1.08996 * 109.46996 * 300.68023 * 1 2 3 31 31 H 1.08999 * 109.46889 * 60.68215 * 1 2 3 32 32 H 1.08994 * 109.91371 * 359.16640 * 4 2 1 33 33 H 1.09002 * 109.91268 * 120.44547 * 4 2 1 34 34 H 1.07997 * 120.05013 * 359.95038 * 9 8 6 35 35 H 1.08001 * 119.91873 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.94306 * 179.97438 * 13 11 10 37 37 H 1.09004 * 110.66060 * 79.14868 * 16 5 4 38 38 H 1.08997 * 110.66364 * 202.10291 * 16 5 4 39 39 H 1.08997 * 109.47076 * 304.99635 * 19 17 2 40 40 H 1.08997 * 109.47480 * 64.99824 * 19 17 2 41 41 H 0.97003 * 120.00072 * 359.97438 * 20 19 17 42 42 H 0.97007 * 119.99703 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8804 -1.8851 -0.7102 6 6 3.8915 -2.5103 -1.3453 7 8 4.5429 -3.3570 -0.7648 8 6 4.2080 -2.1671 -2.7460 9 6 3.1808 -1.8645 -3.6432 10 6 3.4818 -1.5444 -4.9490 11 6 4.8020 -1.5214 -5.3744 12 9 5.0905 -1.2073 -6.6562 13 6 5.8258 -1.8205 -4.4899 14 6 5.5369 -2.1380 -3.1781 15 17 6.8207 -2.5061 -2.0689 16 6 2.3604 -2.1796 0.6450 17 6 2.0671 -0.7736 1.2263 18 1 2.9805 -0.3134 1.6032 19 6 1.0051 -0.8522 2.3249 20 7 1.5798 -1.4837 3.5154 21 6 0.8107 -1.6632 4.6340 22 1 -0.2194 -1.3390 4.6388 23 6 1.3552 -2.2620 5.7619 24 7 2.6105 -2.6576 5.7558 25 14 0.3061 -2.5063 7.2881 26 1 -0.3698 -3.8267 7.2180 27 1 1.1695 -2.4557 8.4953 28 1 -0.7150 -1.4309 7.3642 29 1 -0.3633 -1.0276 0.0121 30 1 -0.3633 0.5243 0.8838 31 1 -0.3633 0.5032 -0.8960 32 1 1.2331 -1.1553 -1.8112 33 1 2.6809 -0.1092 -1.8349 34 1 2.1525 -1.8818 -3.3138 35 1 2.6881 -1.3099 -5.6428 36 1 6.8518 -1.8015 -4.8267 37 1 1.4459 -2.7698 0.5861 38 1 3.1123 -2.6960 1.2417 39 1 0.6657 0.1530 2.5748 40 1 0.1603 -1.4436 1.9719 41 1 2.5050 -1.7752 3.5110 42 1 2.9908 -3.0764 6.5438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672334414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -39.069271 kcal Electronic energy + Delta-G solvation = -26885.556711 eV Core-core repulsion = 22806.482952 eV Total energy + Delta-G solvation = -4079.073759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.47822 -40.66774 -39.12542 -37.73821 -36.72437 -34.71889 -33.04513 -31.64285 -31.23331 -31.10138 -28.91710 -26.72222 -25.52601 -24.17603 -23.51118 -22.89576 -21.89295 -20.01923 -19.09382 -18.24637 -17.80675 -17.12619 -16.81655 -16.22232 -16.03813 -15.66508 -15.25626 -15.04036 -14.70433 -14.45648 -14.27764 -13.94961 -13.72955 -13.57906 -13.25911 -13.15921 -12.85985 -12.46774 -12.33380 -12.20309 -11.91017 -11.77377 -11.74110 -11.62343 -11.24938 -10.99815 -10.84439 -10.54111 -10.43273 -10.27579 -10.00994 -9.89344 -9.67473 -9.53228 -9.18472 -8.86910 -8.66673 -6.91543 -5.74748 -3.04229 0.19683 0.51238 1.70497 2.43810 2.79506 3.15188 3.44494 3.49205 3.51391 3.64015 4.07334 4.18022 4.33913 4.52099 4.58048 4.63761 4.76368 4.80896 4.86911 5.22582 5.26520 5.29537 5.36042 5.39068 5.50747 5.51996 5.54805 5.60070 5.75597 5.79344 5.92809 6.05187 6.08545 6.12500 6.16282 6.26141 6.38023 6.46142 6.70275 6.83043 7.48557 7.70358 8.06500 8.43406 9.54554 10.12069 10.45964 11.47813 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.002600 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.222377 B =10767.203565 C =11941.667741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.101 3.899 5 N -0.615 5.615 6 C 0.571 3.429 7 O -0.510 6.510 8 C -0.127 4.127 9 C -0.049 4.049 10 C -0.156 4.156 11 C 0.132 3.868 12 F -0.129 7.129 13 C -0.155 4.155 14 C 0.035 3.965 15 Cl -0.022 7.022 16 C 0.117 3.883 17 C -0.103 4.103 18 H 0.083 0.917 19 C 0.165 3.835 20 N -0.734 5.734 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 5.721 -26.010 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.359 3.641 7 O -0.385 6.385 8 C -0.131 4.131 9 C -0.068 4.068 10 C -0.175 4.175 11 C 0.112 3.888 12 F -0.107 7.107 13 C -0.175 4.175 14 C 0.007 3.993 15 Cl 0.007 6.993 16 C -0.004 4.004 17 C -0.123 4.123 18 H 0.101 0.899 19 C 0.038 3.962 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.120 5.182 -25.559 26.165 hybrid contribution -0.056 -0.168 0.634 0.658 sum 2.064 5.014 -24.925 25.508 Atomic orbital electron populations 1.21910 0.93886 1.02491 1.01990 1.22047 0.96692 0.99366 0.93727 0.89868 1.22407 0.94390 0.88311 0.97112 1.48727 1.32871 1.34608 1.18649 1.17523 0.79592 0.82013 0.85020 1.90891 1.48579 1.32388 1.66625 1.19919 0.92337 1.05191 0.95636 1.21328 0.99590 0.94095 0.91759 1.21186 0.95217 1.03817 0.97270 1.17660 0.93315 0.98792 0.79052 1.91550 1.94271 1.89960 1.34951 1.20955 1.00664 1.04324 0.91547 1.20685 0.89449 0.98113 0.91058 1.98454 1.47708 1.92100 1.61003 1.22613 0.99584 0.97415 0.80822 1.22523 1.00454 0.94512 0.94796 0.89850 1.20705 0.93247 0.96122 0.86173 1.42414 1.13060 1.72062 1.10301 1.19188 0.94388 1.32800 0.90864 0.91206 1.24754 0.96266 1.01578 0.98318 1.69665 1.12455 1.46278 1.29518 0.86206 0.79159 0.77864 0.83035 1.21725 1.21796 1.20797 0.92080 0.91256 0.92994 0.91227 0.90927 0.83176 0.83369 0.82984 0.90504 0.89036 0.95867 0.95718 0.78244 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.79 37.16 0.29 -1.14 16 2 C -0.10 -1.07 3.53 -89.24 -0.32 -1.38 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.10 0.97 4.93 -2.98 -0.01 0.95 16 5 N -0.61 -8.16 3.29 -170.94 -0.56 -8.73 16 6 C 0.57 8.34 7.25 -12.42 -0.09 8.25 16 7 O -0.51 -9.42 15.33 5.30 0.08 -9.34 16 8 C -0.13 -1.43 5.44 -104.94 -0.57 -2.01 16 9 C -0.05 -0.39 8.21 -39.20 -0.32 -0.71 16 10 C -0.16 -1.06 10.01 -39.57 -0.40 -1.45 16 11 C 0.13 1.05 7.31 -39.28 -0.29 0.77 16 12 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 13 C -0.16 -1.36 9.79 -39.54 -0.39 -1.74 16 14 C 0.04 0.39 6.33 -39.09 -0.25 0.14 16 15 Cl -0.02 -0.28 26.72 -51.86 -1.39 -1.67 16 16 C 0.12 1.83 6.47 -2.13 -0.01 1.82 16 17 C -0.10 -1.56 3.01 -88.74 -0.27 -1.82 16 18 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 19 C 0.17 3.07 4.44 -4.04 -0.02 3.05 16 20 N -0.73 -18.14 5.52 -59.91 -0.33 -18.48 16 21 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 30 H 0.07 0.75 6.76 -51.93 -0.35 0.40 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.52 6.60 -51.93 -0.34 0.18 16 33 H 0.07 0.60 7.26 -51.93 -0.38 0.22 16 34 H 0.15 0.93 5.90 -52.49 -0.31 0.62 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 38 H 0.09 1.73 7.81 -51.93 -0.41 1.32 16 39 H 0.02 0.44 7.37 -51.93 -0.38 0.06 16 40 H 0.03 0.46 6.80 -51.93 -0.35 0.10 16 41 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -32.79 360.34 -9.21 -42.00 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.30 Total: 4.63 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.89 Total: -2.56 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.17 Total: -54.85 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.39 Total: -1.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.79 -9.21 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672334414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.932 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds