Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.28791 * 2 1 4 4 C 1.54007 * 110.32695 * 237.86561 * 2 1 3 5 5 N 1.47489 * 107.08171 * 239.80409 * 4 2 1 6 6 C 1.34777 * 127.03076 * 205.41586 * 5 4 2 7 7 O 1.21580 * 119.99919 * 174.74289 * 6 5 4 8 8 C 1.47648 * 120.00199 * 354.73738 * 6 5 4 9 9 C 1.39704 * 120.13076 * 323.29432 * 8 6 5 10 10 C 1.37772 * 119.89114 * 179.97438 * 9 8 6 11 11 C 1.38724 * 120.16009 * 359.97438 * 10 9 8 12 12 F 1.35095 * 119.87211 * 179.97438 * 11 10 9 13 13 C 1.38561 * 120.25722 * 0.02562 * 11 10 9 14 14 C 1.38033 * 120.10838 * 359.74141 * 13 11 10 15 15 Cl 1.73600 * 120.08016 * 180.25386 * 14 13 11 16 16 C 1.48111 * 105.93415 * 25.44608 * 5 4 2 17 17 C 1.54620 * 110.32611 * 122.24361 * 2 1 3 18 18 H 1.08999 * 110.73837 * 215.38226 * 17 2 1 19 19 C 1.53000 * 110.73602 * 338.70850 * 17 2 1 20 20 N 1.46505 * 109.46924 * 185.00004 * 19 17 2 21 21 C 1.36937 * 120.00197 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99509 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00010 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99844 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47119 * 90.00143 * 25 23 21 27 27 H 1.48501 * 109.46701 * 209.99633 * 25 23 21 28 28 H 1.48496 * 109.47394 * 330.00071 * 25 23 21 29 29 H 1.09004 * 109.47097 * 180.67607 * 1 2 3 30 30 H 1.08996 * 109.46996 * 300.68023 * 1 2 3 31 31 H 1.08999 * 109.46889 * 60.68215 * 1 2 3 32 32 H 1.08994 * 109.91371 * 359.16640 * 4 2 1 33 33 H 1.09002 * 109.91268 * 120.44547 * 4 2 1 34 34 H 1.07997 * 120.05013 * 359.95038 * 9 8 6 35 35 H 1.08001 * 119.91873 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.94306 * 179.97438 * 13 11 10 37 37 H 1.09004 * 110.66060 * 79.14868 * 16 5 4 38 38 H 1.08997 * 110.66364 * 202.10291 * 16 5 4 39 39 H 1.08997 * 109.47076 * 304.99635 * 19 17 2 40 40 H 1.08997 * 109.47480 * 64.99824 * 19 17 2 41 41 H 0.97003 * 120.00072 * 359.97438 * 20 19 17 42 42 H 0.97007 * 119.99703 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8804 -1.8851 -0.7102 6 6 3.8915 -2.5103 -1.3453 7 8 4.5429 -3.3570 -0.7648 8 6 4.2080 -2.1671 -2.7460 9 6 3.1808 -1.8645 -3.6432 10 6 3.4818 -1.5444 -4.9490 11 6 4.8020 -1.5214 -5.3744 12 9 5.0905 -1.2073 -6.6562 13 6 5.8258 -1.8205 -4.4899 14 6 5.5369 -2.1380 -3.1781 15 17 6.8207 -2.5061 -2.0689 16 6 2.3604 -2.1796 0.6450 17 6 2.0671 -0.7736 1.2263 18 1 2.9805 -0.3134 1.6032 19 6 1.0051 -0.8522 2.3249 20 7 1.5798 -1.4837 3.5154 21 6 0.8107 -1.6632 4.6340 22 1 -0.2194 -1.3390 4.6388 23 6 1.3552 -2.2620 5.7619 24 7 2.6105 -2.6576 5.7558 25 14 0.3061 -2.5063 7.2881 26 1 -0.3698 -3.8267 7.2180 27 1 1.1695 -2.4557 8.4953 28 1 -0.7150 -1.4309 7.3642 29 1 -0.3633 -1.0276 0.0121 30 1 -0.3633 0.5243 0.8838 31 1 -0.3633 0.5032 -0.8960 32 1 1.2331 -1.1553 -1.8112 33 1 2.6809 -0.1092 -1.8349 34 1 2.1525 -1.8818 -3.3138 35 1 2.6881 -1.3099 -5.6428 36 1 6.8518 -1.8015 -4.8267 37 1 1.4459 -2.7698 0.5861 38 1 3.1123 -2.6960 1.2417 39 1 0.6657 0.1530 2.5748 40 1 0.1603 -1.4436 1.9719 41 1 2.5050 -1.7752 3.5110 42 1 2.9908 -3.0764 6.5438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672334414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -59.386953 kcal Electronic energy + Delta-G solvation = -26886.437751 eV Core-core repulsion = 22806.482952 eV Total energy + Delta-G solvation = -4079.954800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.10586 -41.64684 -40.02296 -38.83512 -37.58337 -36.43642 -34.40516 -32.84255 -32.38169 -31.92378 -30.32831 -27.71098 -26.93452 -25.39568 -24.43173 -24.01757 -23.16834 -20.96182 -20.32872 -19.21880 -18.85614 -18.47225 -17.85787 -17.13543 -16.92508 -16.75936 -16.41188 -16.13026 -15.95283 -15.40768 -15.23727 -15.12239 -15.08042 -14.54497 -14.46805 -14.21523 -13.96082 -13.80506 -13.43554 -13.34988 -13.06277 -12.90512 -12.75943 -12.68033 -12.48969 -12.43833 -12.18264 -12.13514 -11.83422 -11.60416 -11.48905 -11.34766 -11.02022 -10.88532 -10.21589 -9.96223 -9.72770 -8.97655 -7.93430 -5.22575 -0.54564 -0.12786 0.89602 1.47229 1.49422 1.51436 1.57780 1.78882 2.33357 2.56941 2.98298 3.25381 3.40374 3.46117 3.57546 3.69262 3.80560 3.88157 3.95384 4.14271 4.16243 4.27215 4.38007 4.51739 4.56025 4.64025 4.65996 4.72471 4.82351 4.83650 4.88858 4.91242 4.95464 5.03784 5.18430 5.26576 5.28526 5.42511 5.49933 5.52118 5.59297 6.28240 6.44977 6.98465 7.33916 8.11518 8.32259 9.30384 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.002600 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.222377 B =10767.203565 C =11941.667741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.099 0.901 4 C 0.099 3.901 5 N -0.612 5.612 6 C 0.565 3.435 7 O -0.564 6.564 8 C -0.144 4.144 9 C -0.037 4.037 10 C -0.136 4.136 11 C 0.135 3.865 12 F -0.127 7.127 13 C -0.154 4.154 14 C 0.018 3.982 15 Cl -0.053 7.053 16 C 0.122 3.878 17 C -0.098 4.098 18 H 0.061 0.939 19 C 0.167 3.833 20 N -0.750 5.750 21 C -0.240 4.240 22 H 0.081 0.919 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.974 3.026 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.265 1.265 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.176 0.824 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.369 0.631 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 7.571 -29.213 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.117 0.883 4 C -0.022 4.022 5 N -0.345 5.345 6 C 0.355 3.645 7 O -0.443 6.443 8 C -0.148 4.148 9 C -0.055 4.055 10 C -0.154 4.154 11 C 0.115 3.885 12 F -0.106 7.106 13 C -0.173 4.173 14 C -0.010 4.010 15 Cl -0.023 7.023 16 C -0.001 4.001 17 C -0.118 4.118 18 H 0.079 0.921 19 C 0.041 3.959 20 N -0.393 5.393 21 C -0.372 4.372 22 H 0.099 0.901 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.803 3.197 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.190 1.190 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.193 0.807 35 H 0.204 0.796 36 H 0.182 0.818 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.201 0.799 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.721 7.092 -28.819 29.687 hybrid contribution 0.766 -0.685 1.485 1.806 sum 0.045 6.407 -27.333 28.074 Atomic orbital electron populations 1.21904 0.92541 1.02434 1.03181 1.22056 0.97669 0.99569 0.91471 0.88286 1.22727 0.95276 0.87342 0.96891 1.48758 1.32928 1.35306 1.17501 1.18122 0.78920 0.81227 0.86276 1.90858 1.50424 1.34851 1.68191 1.19764 0.93350 1.07531 0.94151 1.21548 0.99655 0.92812 0.91523 1.21537 0.95436 1.01381 0.97033 1.17765 0.93710 0.98191 0.78828 1.91565 1.94343 1.89846 1.34802 1.21047 1.01858 1.03752 0.90647 1.20785 0.88792 0.99885 0.91494 1.98440 1.49087 1.92539 1.62266 1.22335 0.98212 0.97434 0.82129 1.22352 0.98759 0.94909 0.95734 0.92071 1.20878 0.94273 0.95672 0.85084 1.42710 1.12421 1.72439 1.11695 1.19661 0.94914 1.31020 0.91569 0.90115 1.25619 0.97502 1.02475 1.01679 1.69849 1.14438 1.48132 1.30019 0.85129 0.77636 0.78072 0.78875 1.21504 1.22578 1.18967 0.92667 0.92522 0.89482 0.87712 0.88532 0.80721 0.79639 0.81842 0.90304 0.93674 0.95171 0.94659 0.79938 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.79 71.98 0.56 -1.70 16 2 C -0.09 -1.65 3.53 -9.90 -0.03 -1.68 16 3 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.10 1.53 4.93 86.53 0.43 1.96 16 5 N -0.61 -15.89 3.29 -813.00 -2.67 -18.56 16 6 C 0.57 16.72 7.25 86.73 0.63 17.34 16 7 O -0.56 -22.29 15.33 -3.97 -0.06 -22.35 16 8 C -0.14 -3.06 5.44 -20.07 -0.11 -3.17 16 9 C -0.04 -0.44 8.21 22.51 0.18 -0.26 16 10 C -0.14 -1.16 10.01 22.28 0.22 -0.94 16 11 C 0.13 1.69 7.31 22.46 0.16 1.85 16 12 F -0.13 -1.64 17.26 44.97 0.78 -0.87 16 13 C -0.15 -2.42 9.79 22.30 0.22 -2.20 16 14 C 0.02 0.40 6.33 22.59 0.14 0.54 16 15 Cl -0.05 -1.43 26.72 -2.72 -0.07 -1.50 16 16 C 0.12 3.95 6.47 86.73 0.56 4.51 16 17 C -0.10 -2.96 3.01 -9.58 -0.03 -2.99 16 18 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 19 C 0.17 6.19 4.44 86.38 0.38 6.57 16 20 N -0.75 -38.15 5.52 -343.45 -1.90 -40.05 16 21 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 22 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 23 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 24 N -0.97 -61.61 13.06 21.65 0.28 -61.33 16 25 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 H 0.05 0.95 7.51 -2.38 -0.02 0.93 16 30 H 0.06 1.06 6.76 -2.39 -0.02 1.04 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 0.97 6.60 -2.39 -0.02 0.95 16 33 H 0.10 1.12 7.26 -2.39 -0.02 1.10 16 34 H 0.18 1.19 5.90 -2.91 -0.02 1.18 16 35 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 36 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.08 2.49 7.94 -2.38 -0.02 2.47 16 38 H 0.04 1.87 7.81 -2.39 -0.02 1.85 16 39 H 0.03 1.10 7.37 -2.39 -0.02 1.08 16 40 H 0.04 1.26 6.80 -2.39 -0.02 1.25 16 41 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 42 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -76.63 360.34 3.37 -73.27 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.36 Total: 19.61 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.63 Total: 3.05 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -4.29 Total: -119.94 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.78 Total: -0.87 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal Total: -76.63 3.37 -73.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672334414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.880 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds