Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28724 * 125.32122 * 2 1 4 4 N 1.28980 * 108.99204 * 179.97438 * 3 2 1 5 5 C 1.34191 * 107.25210 * 0.02562 * 4 3 2 6 6 C 1.48003 * 126.69967 * 179.97438 * 5 4 3 7 7 O 1.21538 * 119.99985 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99905 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99611 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46831 * 174.96827 * 9 8 6 11 11 N 1.46495 * 115.54715 * 85.77478 * 10 9 8 12 12 C 1.34779 * 120.00375 * 65.40694 * 11 10 9 13 13 O 1.21283 * 119.99626 * 354.97760 * 12 11 10 14 14 C 1.50700 * 120.00262 * 174.97499 * 12 11 10 15 15 S 1.81006 * 109.46951 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99857 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99846 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00231 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00450 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46982 * 59.99762 * 20 18 16 22 22 H 1.48491 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46901 * 299.99969 * 20 18 16 24 24 C 1.52993 * 117.49722 * 231.44326 * 10 9 8 25 25 C 1.52997 * 117.49928 * 300.10289 * 10 9 8 26 26 N 1.28868 * 125.32181 * 180.31514 * 2 1 3 27 27 H 1.09005 * 109.47159 * 89.97561 * 1 2 3 28 28 H 1.08997 * 109.47586 * 209.97282 * 1 2 3 29 29 H 1.08997 * 109.47465 * 329.97699 * 1 2 3 30 30 H 0.96999 * 120.00486 * 359.97438 * 8 6 5 31 31 H 1.08998 * 109.47545 * 54.97056 * 9 8 6 32 32 H 1.08996 * 109.46839 * 294.96726 * 9 8 6 33 33 H 0.97002 * 119.99938 * 245.40447 * 11 10 9 34 34 H 1.08999 * 109.47302 * 300.00003 * 14 12 11 35 35 H 1.08998 * 109.46945 * 60.00407 * 14 12 11 36 36 H 0.97004 * 119.99765 * 180.02562 * 19 18 16 37 37 H 1.09005 * 117.49813 * 215.00448 * 24 10 9 38 38 H 1.08997 * 117.50305 * 0.02987 * 24 10 9 39 39 H 1.08999 * 117.49998 * 359.97438 * 25 10 9 40 40 H 1.09000 * 117.49970 * 144.97302 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6877 0.0005 5 6 3.4686 -0.6541 0.0003 6 6 4.6693 -1.5194 0.0002 7 8 4.5470 -2.7286 -0.0004 8 7 5.8983 -0.9664 0.0009 9 6 7.0869 -1.8229 0.0002 10 6 8.3408 -0.9551 -0.1253 11 7 8.8704 -0.4244 1.1332 12 6 9.3649 -1.2644 2.0639 13 8 9.2888 -2.4637 1.9000 14 6 10.0124 -0.7136 3.3083 15 16 10.5719 -2.0816 4.3533 16 6 11.2669 -1.1765 5.6959 17 1 11.2517 -0.0966 5.6844 18 6 11.8348 -1.8512 6.7676 19 7 11.8537 -3.1674 6.7812 20 14 12.5722 -0.8918 8.1906 21 1 11.5226 -0.0465 8.8144 22 1 13.1094 -1.8387 9.2005 23 1 13.6704 -0.0273 7.6884 24 6 9.3482 -1.3232 -1.2164 25 6 8.4712 -0.0784 -1.3723 26 7 2.2100 -1.0514 -0.0058 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 5.9960 -0.0013 0.0011 31 1 7.0369 -2.5132 -0.8419 32 1 7.1279 -2.3881 0.9313 33 1 8.8652 0.5318 1.2967 34 1 10.8666 -0.0962 3.0306 35 1 9.2899 -0.1091 3.8566 36 1 12.2503 -3.6390 7.5305 37 1 10.4051 -1.1703 -0.9978 38 1 9.1175 -2.1832 -1.8451 39 1 7.6639 -0.1200 -2.1035 40 1 8.9507 0.8936 -1.2563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689607014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = 94.736954 kcal Electronic energy + Delta-G solvation = -25873.092001 eV Core-core repulsion = 21854.076935 eV Total energy + Delta-G solvation = -4019.015066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.82891 -40.27519 -39.32448 -37.36834 -35.70187 -34.44943 -33.59396 -32.76868 -32.42196 -29.66558 -29.03181 -27.59856 -25.49022 -25.08917 -23.41366 -22.89296 -21.55163 -21.18771 -19.80546 -18.77559 -18.05435 -17.85934 -17.40562 -16.57372 -16.41911 -15.97874 -15.39210 -15.23680 -14.80131 -14.59280 -14.50594 -14.34105 -14.07559 -14.00148 -13.75937 -13.31250 -12.89564 -12.83531 -12.59931 -12.45572 -11.99420 -11.76400 -11.58592 -11.53614 -11.08304 -11.04308 -11.03065 -10.83462 -10.81528 -10.74224 -10.41147 -9.82563 -9.53967 -9.22575 -9.06368 -8.97342 -8.24050 -6.49706 -6.21078 -3.91830 0.57355 1.05805 1.29615 2.43971 2.79770 2.89681 3.02127 3.23837 3.26138 3.29564 3.43191 3.60457 3.63250 3.78407 4.20697 4.27054 4.29334 4.41775 4.58923 4.60858 4.69813 4.82473 5.06559 5.13955 5.16201 5.34857 5.35382 5.43980 5.50598 5.67997 5.71106 5.84608 5.88342 5.89174 6.03147 6.12568 6.60825 7.04574 7.59422 7.63466 7.66437 7.81258 8.35272 8.57415 9.24030 10.86205 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002247 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.473793 B =12456.629509 C =13584.076738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.134 5.134 3 N -0.055 5.055 4 N -0.253 5.253 5 C 0.132 3.868 6 C 0.615 3.385 7 O -0.503 6.503 8 N -0.700 5.700 9 C 0.150 3.850 10 C 0.087 3.913 11 N -0.710 5.710 12 C 0.535 3.465 13 O -0.505 6.505 14 C -0.153 4.153 15 S -0.057 6.057 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.155 4.155 25 C -0.169 4.169 26 N -0.246 5.246 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.410 0.590 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.401 0.599 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.713 11.326 -18.949 29.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.047 5.047 3 N -0.049 5.049 4 N -0.128 5.128 5 C -0.152 4.152 6 C 0.394 3.606 7 O -0.373 6.373 8 N -0.353 5.353 9 C 0.026 3.974 10 C -0.001 4.001 11 N -0.364 5.364 12 C 0.321 3.679 13 O -0.378 6.378 14 C -0.304 4.304 15 S 0.169 5.831 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.194 4.194 25 C -0.207 4.207 26 N -0.100 5.100 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.246 0.754 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.217 8.747 -19.102 29.156 hybrid contribution 0.696 2.639 1.286 3.018 sum -19.521 11.386 -17.815 28.777 Atomic orbital electron populations 1.22588 0.68285 1.07438 1.06513 1.50273 1.11228 1.00614 1.42614 1.78933 0.96326 1.14020 1.15573 1.76124 1.10209 1.10064 1.16449 1.25310 0.93210 0.90275 1.06441 1.16049 0.80678 0.85739 0.78151 1.90898 1.85460 1.12703 1.48274 1.45683 1.04358 1.11450 1.73802 1.21253 0.79666 0.91382 1.05050 1.20597 0.95899 1.02018 0.81634 1.45440 1.64611 1.10146 1.16249 1.20368 0.77120 0.86751 0.83616 1.90712 1.55037 1.14887 1.77180 1.23538 1.02891 1.06547 0.97430 1.85421 1.74942 1.05011 1.17688 1.22823 1.44574 0.94821 1.06273 0.90988 1.24992 0.95487 0.95087 0.98021 1.70010 1.42374 1.06452 1.31395 0.86226 0.79279 0.79323 0.80680 1.19958 1.20813 1.19937 1.23376 0.97601 0.98676 0.99746 1.23351 1.03365 0.96348 0.97589 1.75114 1.02433 1.14325 1.18138 0.87530 0.86610 0.86444 0.75418 0.89511 0.88569 0.76341 0.89153 0.89243 0.92116 0.87708 0.87653 0.87567 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.17 11.62 59.84 0.70 0.87 16 2 N -0.13 -1.11 4.39 -16.65 -0.07 -1.18 16 3 N -0.05 -0.54 13.23 60.35 0.80 0.26 16 4 N -0.25 -2.87 12.26 32.10 0.39 -2.48 16 5 C 0.13 1.62 8.14 -156.23 -1.27 0.35 16 6 C 0.61 8.22 7.84 -12.26 -0.10 8.13 16 7 O -0.50 -8.43 17.09 5.33 0.09 -8.34 16 8 N -0.70 -7.72 5.44 -61.19 -0.33 -8.06 16 9 C 0.15 1.85 5.63 -4.03 -0.02 1.83 16 10 C 0.09 0.94 1.79 -131.82 -0.24 0.71 16 11 N -0.71 -8.76 5.45 -47.61 -0.26 -9.02 16 12 C 0.54 9.53 7.66 -10.98 -0.08 9.44 16 13 O -0.51 -10.97 14.64 5.56 0.08 -10.89 16 14 C -0.15 -3.02 6.16 36.01 0.22 -2.79 16 15 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 16 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 17 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 20 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.16 -1.52 10.11 -26.70 -0.27 -1.79 16 25 C -0.17 -1.25 9.94 -26.70 -0.27 -1.51 16 26 N -0.25 -2.83 12.17 32.11 0.39 -2.44 16 27 H 0.11 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.12 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.12 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.41 3.70 8.12 -40.82 -0.33 3.36 16 31 H 0.09 1.02 7.89 -51.93 -0.41 0.61 16 32 H 0.10 1.56 6.83 -51.93 -0.35 1.20 16 33 H 0.40 3.76 8.83 -40.82 -0.36 3.40 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.11 0.94 8.05 -51.93 -0.42 0.53 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -38.89 374.20 -5.70 -44.60 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.80 Total: 2.43 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.13 Total: 2.29 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 1.65 Total: -48.39 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.17 Total: -19.22 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.89 -5.70 -44.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689607014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.335 kcal (2) G-P(sol) polarization free energy of solvation -38.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds