Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28724 * 125.32122 * 2 1 4 4 N 1.28980 * 108.99204 * 179.97438 * 3 2 1 5 5 C 1.34191 * 107.25210 * 0.02562 * 4 3 2 6 6 C 1.48003 * 126.69967 * 179.97438 * 5 4 3 7 7 O 1.21538 * 119.99985 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99905 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99611 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46831 * 174.96827 * 9 8 6 11 11 N 1.46495 * 115.54715 * 85.77478 * 10 9 8 12 12 C 1.34779 * 120.00375 * 65.40694 * 11 10 9 13 13 O 1.21283 * 119.99626 * 354.97760 * 12 11 10 14 14 C 1.50700 * 120.00262 * 174.97499 * 12 11 10 15 15 S 1.81006 * 109.46951 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99857 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99846 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00231 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00450 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46982 * 59.99762 * 20 18 16 22 22 H 1.48491 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46901 * 299.99969 * 20 18 16 24 24 C 1.52993 * 117.49722 * 231.44326 * 10 9 8 25 25 C 1.52997 * 117.49928 * 300.10289 * 10 9 8 26 26 N 1.28868 * 125.32181 * 180.31514 * 2 1 3 27 27 H 1.09005 * 109.47159 * 89.97561 * 1 2 3 28 28 H 1.08997 * 109.47586 * 209.97282 * 1 2 3 29 29 H 1.08997 * 109.47465 * 329.97699 * 1 2 3 30 30 H 0.96999 * 120.00486 * 359.97438 * 8 6 5 31 31 H 1.08998 * 109.47545 * 54.97056 * 9 8 6 32 32 H 1.08996 * 109.46839 * 294.96726 * 9 8 6 33 33 H 0.97002 * 119.99938 * 245.40447 * 11 10 9 34 34 H 1.08999 * 109.47302 * 300.00003 * 14 12 11 35 35 H 1.08998 * 109.46945 * 60.00407 * 14 12 11 36 36 H 0.97004 * 119.99765 * 180.02562 * 19 18 16 37 37 H 1.09005 * 117.49813 * 215.00448 * 24 10 9 38 38 H 1.08997 * 117.50305 * 0.02987 * 24 10 9 39 39 H 1.08999 * 117.49998 * 359.97438 * 25 10 9 40 40 H 1.09000 * 117.49970 * 144.97302 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6877 0.0005 5 6 3.4686 -0.6541 0.0003 6 6 4.6693 -1.5194 0.0002 7 8 4.5470 -2.7286 -0.0004 8 7 5.8983 -0.9664 0.0009 9 6 7.0869 -1.8229 0.0002 10 6 8.3408 -0.9551 -0.1253 11 7 8.8704 -0.4244 1.1332 12 6 9.3649 -1.2644 2.0639 13 8 9.2888 -2.4637 1.9000 14 6 10.0124 -0.7136 3.3083 15 16 10.5719 -2.0816 4.3533 16 6 11.2669 -1.1765 5.6959 17 1 11.2517 -0.0966 5.6844 18 6 11.8348 -1.8512 6.7676 19 7 11.8537 -3.1674 6.7812 20 14 12.5722 -0.8918 8.1906 21 1 11.5226 -0.0465 8.8144 22 1 13.1094 -1.8387 9.2005 23 1 13.6704 -0.0273 7.6884 24 6 9.3482 -1.3232 -1.2164 25 6 8.4712 -0.0784 -1.3723 26 7 2.2100 -1.0514 -0.0058 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 5.9960 -0.0013 0.0011 31 1 7.0369 -2.5132 -0.8419 32 1 7.1279 -2.3881 0.9313 33 1 8.8652 0.5318 1.2967 34 1 10.8666 -0.0962 3.0306 35 1 9.2899 -0.1091 3.8566 36 1 12.2503 -3.6390 7.5305 37 1 10.4051 -1.1703 -0.9978 38 1 9.1175 -2.1832 -1.8451 39 1 7.6639 -0.1200 -2.1035 40 1 8.9507 0.8936 -1.2563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689607014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = 62.095206 kcal Electronic energy + Delta-G solvation = -25874.507454 eV Core-core repulsion = 21854.076935 eV Total energy + Delta-G solvation = -4020.430519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -45.59707 -41.35254 -40.51326 -38.50344 -36.38920 -35.44009 -34.58358 -34.40094 -33.98032 -30.58574 -30.16401 -28.46241 -27.65619 -25.96298 -24.07286 -23.69037 -22.66196 -22.14782 -20.94206 -19.84253 -19.64847 -18.77200 -18.12603 -17.81167 -17.50746 -17.12645 -16.87601 -16.50575 -16.40383 -16.00180 -15.60057 -15.29334 -15.10750 -14.79733 -14.55214 -14.42145 -14.15284 -13.97444 -13.67540 -13.42724 -13.21944 -13.16327 -12.86705 -12.62778 -12.42095 -12.39949 -12.29449 -11.99852 -11.82505 -11.72685 -11.53192 -11.38683 -11.12674 -10.84691 -10.35890 -10.26394 -10.10032 -8.65806 -8.34182 -6.12055 -0.22678 0.19724 0.74381 1.25980 1.43677 1.46047 1.55584 1.59358 1.62450 1.80349 2.15520 2.28134 2.61784 2.83044 2.99736 3.05332 3.30495 3.45169 3.77215 3.87067 3.92970 3.99814 4.04515 4.22526 4.31740 4.44319 4.48310 4.51714 4.56194 4.61043 4.76355 4.79532 4.93341 5.01270 5.02902 5.21474 5.41700 5.53252 6.11571 6.19757 6.51194 6.75764 6.96691 7.06909 7.27688 8.74644 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002247 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.473793 B =12456.629509 C =13584.076738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.114 5.114 3 N -0.058 5.058 4 N -0.260 5.260 5 C 0.116 3.884 6 C 0.615 3.385 7 O -0.546 6.546 8 N -0.682 5.682 9 C 0.157 3.843 10 C 0.061 3.939 11 N -0.683 5.683 12 C 0.537 3.463 13 O -0.552 6.552 14 C -0.129 4.129 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.261 1.261 24 C -0.166 4.166 25 C -0.124 4.124 26 N -0.265 5.265 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.144 0.856 30 H 0.422 0.578 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.420 0.580 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.271 0.729 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.685 14.862 -19.949 32.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.030 5.030 3 N -0.052 5.052 4 N -0.135 5.135 5 C -0.167 4.167 6 C 0.395 3.605 7 O -0.421 6.421 8 N -0.334 5.334 9 C 0.033 3.967 10 C -0.027 4.027 11 N -0.337 5.337 12 C 0.323 3.677 13 O -0.429 6.429 14 C -0.281 4.281 15 S 0.076 5.924 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.185 1.185 24 C -0.204 4.204 25 C -0.161 4.161 26 N -0.121 5.121 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.162 0.838 30 H 0.260 0.740 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.259 0.741 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.206 12.389 -20.139 31.761 hybrid contribution 0.805 1.603 1.471 2.320 sum -20.401 13.992 -18.668 30.991 Atomic orbital electron populations 1.23282 0.64910 1.09443 1.08853 1.50810 1.12755 0.99394 1.40002 1.78855 0.96105 1.14379 1.15826 1.76077 1.11114 1.09398 1.16904 1.25020 0.93102 0.90576 1.08022 1.16252 0.81505 0.85364 0.77375 1.90869 1.86161 1.14545 1.50482 1.45543 1.03437 1.11877 1.72563 1.21031 0.80908 0.91807 1.02974 1.20686 0.95737 1.04656 0.81662 1.45076 1.62485 1.10444 1.15695 1.20076 0.77238 0.86466 0.83927 1.90707 1.57145 1.16919 1.78116 1.23372 1.04098 1.03506 0.97079 1.85610 1.75867 1.10746 1.20159 1.23174 1.44439 0.95290 1.06515 0.89883 1.26141 0.95811 0.96113 1.01216 1.70186 1.43592 1.08532 1.32478 0.85008 0.78698 0.77786 0.76532 1.18739 1.20479 1.18512 1.23457 0.97163 1.00695 0.99132 1.23521 1.02338 0.96139 0.94093 1.75078 1.02567 1.15695 1.18735 0.84916 0.85279 0.83835 0.73962 0.89143 0.92882 0.74147 0.87017 0.87488 0.92037 0.88446 0.87194 0.85612 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.08 11.62 127.77 1.49 1.56 16 2 N -0.11 -1.69 4.39 -206.60 -0.91 -2.60 16 3 N -0.06 -1.06 13.23 37.02 0.49 -0.57 16 4 N -0.26 -5.59 12.26 -52.36 -0.64 -6.23 16 5 C 0.12 2.83 8.14 137.15 1.12 3.94 16 6 C 0.61 16.72 7.84 86.83 0.68 17.40 16 7 O -0.55 -19.16 17.09 -3.84 -0.07 -19.23 16 8 N -0.68 -14.75 5.44 -465.81 -2.54 -17.28 16 9 C 0.16 3.92 5.63 86.38 0.49 4.41 16 10 C 0.06 1.23 1.79 3.60 0.01 1.23 16 11 N -0.68 -15.80 5.45 -422.93 -2.31 -18.11 16 12 C 0.54 19.14 7.66 87.66 0.67 19.81 16 13 O -0.55 -24.97 14.64 -3.04 -0.04 -25.02 16 14 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 15 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 16 C -0.55 -31.28 9.50 67.95 0.65 -30.64 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 20 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.17 -2.96 10.11 30.62 0.31 -2.65 16 25 C -0.12 -1.37 9.94 30.62 0.30 -1.07 16 26 N -0.27 -5.94 12.17 -52.31 -0.64 -6.57 16 27 H 0.13 -0.46 8.14 -2.38 -0.02 -0.48 16 28 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.14 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.42 6.92 8.12 -92.71 -0.75 6.17 16 31 H 0.09 2.18 7.89 -2.39 -0.02 2.17 16 32 H 0.05 1.83 6.83 -2.39 -0.02 1.82 16 33 H 0.42 6.61 8.83 -92.71 -0.82 5.80 16 34 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 35 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.11 1.85 8.05 -2.39 -0.02 1.83 16 39 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -90.09 374.20 0.66 -89.43 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.45 Total: 15.58 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.61 Total: 10.57 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -6.25 Total: -107.61 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -0.11 Total: -44.25 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -90.09 0.66 -89.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689607014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.524 kcal (2) G-P(sol) polarization free energy of solvation -90.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds