Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99844 * 2 1 4 4 C 1.52998 * 109.47043 * 84.36438 * 3 2 1 5 5 H 1.09002 * 112.73787 * 316.20238 * 4 3 2 6 6 C 1.53496 * 113.46935 * 87.02041 * 4 3 2 7 7 C 1.53247 * 83.42938 * 140.67929 * 6 4 3 8 8 N 1.47063 * 113.46875 * 185.46184 * 4 3 2 9 9 C 1.36932 * 136.06072 * 38.05826 * 8 4 3 10 10 H 1.08006 * 119.99861 * 352.15137 * 9 8 4 11 11 C 1.38814 * 120.00210 * 171.86850 * 9 8 4 12 12 N 1.31612 * 120.00022 * 0.28211 * 11 9 8 13 13 Si 1.86798 * 119.99871 * 180.27341 * 11 9 8 14 14 H 1.48504 * 109.46757 * 90.00560 * 13 11 9 15 15 H 1.48496 * 109.47296 * 210.00132 * 13 11 9 16 16 H 1.48495 * 109.47405 * 330.00672 * 13 11 9 17 17 C 1.34770 * 120.00000 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99798 * 179.97438 * 17 2 1 19 19 C 1.50695 * 120.00437 * 359.97438 * 17 2 1 20 20 C 1.50699 * 109.47723 * 180.02562 * 19 17 2 21 21 C 1.38455 * 120.01772 * 89.99979 * 20 19 17 22 22 F 1.35095 * 120.02012 * 359.97438 * 21 20 19 23 23 C 1.38447 * 119.95805 * 180.02562 * 21 20 19 24 24 C 1.38226 * 120.00337 * 0.02562 * 23 21 20 25 25 C 1.38196 * 120.03969 * 359.97438 * 24 23 21 26 26 C 1.38298 * 120.01631 * 269.73058 * 20 19 17 27 27 Cl 1.73591 * 120.00326 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.47265 * 90.14452 * 1 2 3 29 29 H 1.09004 * 109.46692 * 210.14526 * 1 2 3 30 30 H 1.09004 * 109.47341 * 330.14125 * 1 2 3 31 31 H 1.09003 * 109.47346 * 324.36764 * 3 2 1 32 32 H 1.08995 * 109.47266 * 204.36302 * 3 2 1 33 33 H 1.08999 * 114.21098 * 254.43351 * 6 4 3 34 34 H 1.09003 * 114.20264 * 27.06933 * 6 4 3 35 35 H 1.08996 * 113.38405 * 219.29442 * 7 6 4 36 36 H 1.09004 * 113.46769 * 88.93182 * 7 6 4 37 37 H 0.97003 * 120.00540 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47360 * 300.00689 * 19 17 2 39 39 H 1.09007 * 109.47034 * 59.99951 * 19 17 2 40 40 H 1.08007 * 119.99576 * 180.02562 * 23 21 20 41 41 H 1.08000 * 119.97832 * 179.97438 * 24 23 21 42 42 H 1.07998 * 119.98087 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3298 1.7812 1.4355 5 1 1.4039 1.6880 2.0032 6 6 3.5579 1.2278 2.1714 7 6 3.6441 2.6514 2.7323 8 7 2.9408 3.1158 1.5270 9 6 2.8846 4.2776 0.8045 10 1 2.3659 4.3000 -0.1426 11 6 3.4891 5.4282 1.2921 12 7 4.1212 5.4009 2.4461 13 14 3.4058 7.0150 0.3100 14 1 2.1969 7.7803 0.7078 15 1 4.6180 7.8288 0.5805 16 1 3.3359 6.6974 -1.1389 17 6 2.1389 -1.1671 -0.0005 18 8 3.3517 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 6 2.3647 -3.6177 -0.0005 21 6 2.8148 -4.1442 1.1983 22 9 2.3768 -3.6310 2.3687 23 6 3.7149 -5.1962 1.1969 24 6 4.1640 -5.7199 -0.0009 25 6 3.7148 -5.1945 -1.1975 26 6 2.8100 -4.1472 -1.1980 27 17 2.2405 -3.4929 -2.7016 28 1 -0.3634 -0.0026 -1.0276 29 1 -0.3633 -0.8887 0.5161 30 1 -0.3634 0.8913 0.5116 31 1 1.6558 2.0011 -0.5987 32 1 3.1898 1.1154 -0.4239 33 1 3.3272 0.4654 2.9154 34 1 4.3856 0.9547 1.5168 35 1 4.6653 3.0246 2.8099 36 1 3.0725 2.7919 3.6497 37 1 4.5440 6.2048 2.7867 38 1 0.7591 -2.5302 0.8896 39 1 0.7584 -2.5298 -0.8903 40 1 4.0661 -5.6076 2.1317 41 1 4.8665 -6.5403 -0.0015 42 1 4.0660 -5.6047 -2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691069493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = 3.801050 kcal Electronic energy + Delta-G solvation = -27386.996491 eV Core-core repulsion = 23309.781729 eV Total energy + Delta-G solvation = -4077.214762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.13674 -40.16003 -39.11791 -37.82310 -36.72907 -35.17980 -33.26224 -32.14280 -30.71111 -29.19338 -27.84071 -27.48240 -26.03815 -23.35455 -23.16024 -22.82002 -21.68083 -19.16491 -19.00922 -17.98626 -17.14335 -17.11554 -16.57822 -16.35354 -15.75226 -15.62584 -15.35466 -15.00046 -14.68335 -14.07511 -13.85403 -13.66687 -13.64643 -13.59586 -13.07757 -13.03495 -12.66278 -12.49727 -12.09551 -12.02325 -11.81984 -11.66651 -11.62777 -11.41279 -11.13457 -11.03753 -10.80252 -10.70949 -10.36473 -9.83069 -9.76294 -9.71535 -9.36817 -9.06178 -8.96304 -8.74627 -8.23464 -6.80684 -5.73214 -3.05081 0.69545 0.76463 1.76671 2.81133 3.00812 3.32261 3.41069 3.45829 3.48088 3.96997 4.19012 4.42525 4.48933 4.52985 4.66640 4.87634 5.04094 5.07937 5.17223 5.29695 5.31962 5.41952 5.52183 5.56673 5.66965 5.70439 5.72736 5.77382 5.88048 5.96001 6.07094 6.14379 6.40928 6.46627 6.58687 6.71925 6.83155 6.89341 7.31223 7.51465 7.61790 7.63074 8.02349 8.37987 9.07476 9.74579 10.71648 11.45259 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002878 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.960068 B = 9725.233346 C =10339.771431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.115 3.885 4 C 0.130 3.870 5 H 0.040 0.960 6 C -0.158 4.158 7 C 0.159 3.841 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.079 0.921 11 C -0.006 4.006 12 N -0.917 5.917 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.517 3.483 18 O -0.524 6.524 19 C -0.109 4.109 20 C -0.089 4.089 21 C 0.127 3.873 22 F -0.128 7.128 23 C -0.149 4.149 24 C -0.080 4.080 25 C -0.121 4.121 26 C 0.003 3.997 27 Cl -0.054 7.054 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 -25.281 -6.030 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.343 5.343 3 C -0.008 4.008 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.196 4.196 7 C 0.033 3.967 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.564 5.564 13 Si 0.740 3.260 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.206 1.206 17 C 0.304 3.696 18 O -0.400 6.400 19 C -0.148 4.148 20 C -0.091 4.091 21 C 0.107 3.893 22 F -0.106 7.106 23 C -0.168 4.168 24 C -0.099 4.099 25 C -0.140 4.140 26 C -0.024 4.024 27 Cl -0.025 7.025 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.963 -24.794 -6.197 26.243 hybrid contribution -0.452 1.243 -0.249 1.346 sum -6.416 -23.550 -6.446 25.245 Atomic orbital electron populations 1.21815 0.80014 1.03340 1.01611 1.47824 1.06766 1.06453 1.73270 1.21901 0.97540 0.82196 0.99124 1.22427 0.95177 0.87140 0.93045 0.94298 1.23598 0.98701 0.97487 0.99818 1.21878 0.97719 0.87674 0.89436 1.45615 1.50272 1.08220 1.28550 1.18876 1.30783 0.85210 0.99725 0.90295 1.24836 1.01045 0.97521 0.96936 1.69853 1.39296 1.27803 1.19433 0.86155 0.77117 0.83563 0.79156 1.21640 1.21649 1.20583 1.20103 0.88044 0.84592 0.76854 1.90727 1.13467 1.86977 1.48788 1.20715 0.97552 0.90656 1.05926 1.19140 1.00768 0.98146 0.91014 1.17269 0.96711 0.94701 0.80610 1.91534 1.87851 1.86048 1.45195 1.21230 0.98292 0.96911 1.00325 1.20936 0.98759 0.99439 0.90736 1.21071 0.97151 0.96101 0.99656 1.20497 0.98596 0.96670 0.86606 1.98383 1.87807 1.85599 1.30739 0.92670 0.91433 0.90469 0.91027 0.89322 0.93285 0.90133 0.92094 0.95710 0.93672 0.87409 0.87242 0.84002 0.84020 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.26 59.85 0.61 1.42 16 2 N -0.61 -9.16 2.87 -181.57 -0.52 -9.68 16 3 C 0.12 2.17 5.42 -4.04 -0.02 2.14 16 4 C 0.13 2.79 4.32 -72.39 -0.31 2.47 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 6 C -0.16 -3.40 8.00 -26.35 -0.21 -3.61 16 7 C 0.16 4.00 7.21 -8.63 -0.06 3.94 16 8 N -0.60 -15.84 3.64 -177.14 -0.65 -16.48 16 9 C -0.22 -6.19 10.55 -15.06 -0.16 -6.35 16 10 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.99 11.74 55.49 0.65 -27.34 16 13 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.52 7.99 7.67 -10.99 -0.08 7.91 16 18 O -0.52 -10.09 15.53 5.56 0.09 -10.01 16 19 C -0.11 -1.24 3.82 -29.04 -0.11 -1.35 16 20 C -0.09 -1.05 4.38 -104.52 -0.46 -1.51 16 21 C 0.13 1.49 7.24 -39.42 -0.29 1.20 16 22 F -0.13 -1.64 16.48 2.25 0.04 -1.60 16 23 C -0.15 -1.36 10.03 -39.51 -0.40 -1.76 16 24 C -0.08 -0.62 10.04 -39.60 -0.40 -1.01 16 25 C -0.12 -1.06 9.83 -39.54 -0.39 -1.45 16 26 C 0.00 0.04 6.31 -39.50 -0.25 -0.21 16 27 Cl -0.05 -0.58 27.29 -51.86 -1.42 -1.99 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.55 6.45 -51.93 -0.33 0.22 16 30 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 32 H 0.09 1.87 6.98 -51.93 -0.36 1.51 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.82 7.93 -51.93 -0.41 1.41 16 35 H 0.06 1.68 7.52 -51.93 -0.39 1.29 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.11 1.06 6.90 -51.93 -0.36 0.70 16 39 H 0.11 1.04 6.86 -51.92 -0.36 0.69 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -34.44 370.71 -9.42 -43.86 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.56 Total: -1.29 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.62 Total: 1.55 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.52 Total: -53.50 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.42 Total: -1.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.44 -9.42 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691069493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.662 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds