Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00496 * 2 1 4 4 O 1.21559 * 120.00325 * 175.46900 * 3 2 1 5 5 C 1.47789 * 119.99543 * 355.47774 * 3 2 1 6 6 C 1.39628 * 120.12438 * 41.49428 * 5 3 2 7 7 C 1.37894 * 119.91764 * 179.97438 * 6 5 3 8 8 C 1.38480 * 120.16156 * 0.02622 * 7 6 5 9 9 Cl 1.73591 * 119.88063 * 179.97438 * 8 7 6 10 10 C 1.38700 * 120.23876 * 359.97438 * 8 7 6 11 11 F 1.35100 * 119.95574 * 179.97438 * 10 8 7 12 12 C 1.38132 * 120.08636 * 359.70139 * 10 8 7 13 13 C 1.46499 * 119.99619 * 180.02562 * 2 1 3 14 14 H 1.08997 * 109.47146 * 180.02562 * 13 2 1 15 15 C 1.52999 * 109.47117 * 299.99848 * 13 2 1 16 16 N 1.46494 * 109.47224 * 305.00012 * 15 13 2 17 17 C 1.36936 * 120.00187 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99707 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46915 * 90.00697 * 21 19 17 23 23 H 1.48501 * 109.47312 * 210.00110 * 21 19 17 24 24 H 1.48503 * 109.47594 * 330.00613 * 21 19 17 25 25 C 1.53003 * 109.47546 * 59.99958 * 13 2 1 26 26 C 1.52997 * 117.50011 * 111.24620 * 25 13 2 27 27 C 1.52998 * 117.50392 * 179.91280 * 25 13 2 28 28 H 1.09004 * 109.47190 * 275.17981 * 1 2 3 29 29 H 1.09005 * 109.46797 * 35.17604 * 1 2 3 30 30 H 1.08999 * 109.47349 * 155.17532 * 1 2 3 31 31 H 1.08004 * 120.04046 * 0.02562 * 6 5 3 32 32 H 1.07996 * 119.91728 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.08288 * 180.27290 * 12 10 8 34 34 H 1.09002 * 109.47149 * 65.00585 * 15 13 2 35 35 H 1.09007 * 109.46926 * 184.99805 * 15 13 2 36 36 H 0.97006 * 119.99973 * 359.97438 * 16 15 13 37 37 H 0.97003 * 119.99503 * 179.97438 * 20 19 17 38 38 H 1.09001 * 115.54461 * 325.58566 * 25 13 2 39 39 H 1.08997 * 117.50066 * 215.00476 * 26 25 13 40 40 H 1.09004 * 117.50009 * 0.03191 * 26 25 13 41 41 H 1.08998 * 117.49273 * 359.97215 * 27 25 13 42 42 H 1.08998 * 117.49973 * 144.97306 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1687 0.0832 5 6 1.4035 2.4450 -0.1009 6 6 0.2180 2.6295 0.6132 7 6 -0.4646 3.8238 0.5163 8 6 0.0227 4.8404 -0.2879 9 17 -0.8428 6.3406 -0.4050 10 6 1.1997 4.6642 -1.0002 11 9 1.6696 5.6596 -1.7835 12 6 1.8951 3.4744 -0.9053 13 6 2.1974 -1.2688 -0.0006 14 1 3.2691 -1.0697 0.0000 15 6 1.8278 -2.0716 1.2483 16 7 2.0706 -1.2575 2.4418 17 6 1.8102 -1.7698 3.6847 18 1 1.4262 -2.7742 3.7852 19 6 2.0409 -0.9985 4.8156 20 7 2.5093 0.2254 4.6932 21 14 1.6850 -1.6972 6.5111 22 1 2.8987 -2.3769 7.0310 23 1 1.3027 -0.5953 7.4303 24 1 0.5709 -2.6748 6.4198 25 6 1.8278 -2.0706 -1.2502 26 6 2.9086 -2.2535 -2.3175 27 6 2.4942 -3.4351 -1.4369 28 1 -0.3634 0.0928 1.0235 29 1 -0.3633 0.8401 -0.5921 30 1 -0.3634 -0.9327 -0.4314 31 1 -0.1636 1.8381 1.2414 32 1 -1.3818 3.9663 1.0684 33 1 2.8138 3.3390 -1.4565 34 1 0.7740 -2.3470 1.2045 35 1 2.4375 -2.9740 1.2938 36 1 2.4159 -0.3554 2.3516 37 1 2.6701 0.7644 5.4835 38 1 0.7978 -1.9627 -1.5902 39 1 2.5897 -2.2662 -3.3597 40 1 3.8832 -1.8031 -2.1293 41 1 3.1964 -3.7613 -0.6696 42 1 1.9026 -4.2251 -1.8994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700729564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -7.382660 kcal Electronic energy + Delta-G solvation = -27491.848106 eV Core-core repulsion = 23414.148381 eV Total energy + Delta-G solvation = -4077.699724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.12286 -40.48445 -38.76008 -37.48120 -36.66566 -35.27562 -34.11241 -31.64297 -31.19910 -30.54791 -28.18329 -26.79224 -24.62307 -23.66552 -23.04306 -22.46326 -21.59918 -20.57925 -19.24636 -17.92473 -17.17423 -17.16201 -16.80667 -16.42261 -15.99643 -15.84145 -15.06385 -14.85365 -14.69723 -14.22205 -13.98332 -13.80585 -13.40774 -13.34693 -13.10643 -13.07618 -12.94795 -12.42137 -12.40769 -11.97395 -11.84899 -11.63947 -11.48727 -11.45052 -11.12358 -11.10563 -10.86722 -10.74406 -10.38678 -10.16472 -9.86582 -9.71496 -9.66391 -9.24358 -8.89216 -8.85686 -8.36409 -6.92728 -5.75277 -3.05229 0.47708 0.87528 1.73770 2.71526 3.01431 3.40855 3.42414 3.47438 3.49330 3.82620 3.91029 4.39846 4.49022 4.55868 4.74710 4.82424 4.91917 4.98250 5.03480 5.21882 5.30991 5.33943 5.48462 5.55793 5.56978 5.66020 5.68844 5.75838 5.77020 5.85844 5.95071 5.98993 6.02979 6.17769 6.19810 6.26498 6.38515 6.44123 6.67806 6.89182 7.54959 7.68706 8.32933 8.41982 9.53652 10.11357 10.46742 11.46560 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.003897 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.644523 B = 7182.387513 C = 9417.013587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.585 5.585 3 C 0.562 3.438 4 O -0.523 6.523 5 C -0.082 4.082 6 C -0.082 4.082 7 C -0.088 4.088 8 C -0.059 4.059 9 Cl -0.051 7.051 10 C 0.101 3.899 11 F -0.126 7.126 12 C -0.093 4.093 13 C 0.163 3.837 14 H 0.102 0.898 15 C 0.149 3.851 16 N -0.729 5.729 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.928 5.928 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.160 4.160 26 C -0.179 4.179 27 C -0.169 4.169 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.022 0.978 35 H 0.030 0.970 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 4.346 -15.884 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.316 5.316 3 C 0.350 3.650 4 O -0.399 6.399 5 C -0.086 4.086 6 C -0.101 4.101 7 C -0.106 4.106 8 C -0.087 4.087 9 Cl -0.022 7.022 10 C 0.081 3.919 11 F -0.104 7.104 12 C -0.113 4.113 13 C 0.059 3.941 14 H 0.120 0.880 15 C 0.020 3.980 16 N -0.373 5.373 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.180 4.180 26 C -0.216 4.216 27 C -0.206 4.206 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.369 4.406 -15.737 17.927 hybrid contribution -0.165 0.291 0.934 0.993 sum -7.534 4.697 -14.803 17.261 Atomic orbital electron populations 1.22071 0.79854 1.02718 1.02420 1.47441 1.06873 1.05260 1.72071 1.17983 0.87012 0.83179 0.76873 1.90822 1.13323 1.86721 1.49023 1.19885 0.95466 0.94930 0.98304 1.21805 0.92979 0.97830 0.97492 1.20958 1.01081 0.91199 0.97411 1.21189 0.94704 0.90572 1.02204 1.98388 1.75526 1.31025 1.97247 1.17149 0.93512 0.86709 0.94544 1.91546 1.87902 1.59147 1.71842 1.21088 1.00206 0.90379 0.99623 1.20978 0.97844 0.81902 0.93329 0.87978 1.20934 0.97869 0.93478 0.85723 1.42313 1.78860 1.15836 1.00338 1.19189 1.36428 0.98047 0.83626 0.91277 1.24738 1.01987 0.96305 0.97703 1.69686 1.50837 1.08711 1.28393 0.86235 0.77825 0.77680 0.84677 1.21747 1.21820 1.20813 1.22547 0.98098 0.99567 0.97761 1.23027 0.99682 1.02952 0.95932 1.22932 1.03704 0.91084 1.02920 0.91185 0.91327 0.90783 0.82512 0.83259 0.83019 0.95998 0.95261 0.77942 0.93519 0.87589 0.89125 0.88656 0.88247 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 8.00 59.85 0.48 1.34 16 2 N -0.59 -9.05 2.24 -175.06 -0.39 -9.44 16 3 C 0.56 9.74 7.03 -12.36 -0.09 9.65 16 4 O -0.52 -11.04 16.28 5.31 0.09 -10.96 16 5 C -0.08 -1.19 5.15 -104.97 -0.54 -1.73 16 6 C -0.08 -1.03 7.62 -39.19 -0.30 -1.33 16 7 C -0.09 -0.96 9.81 -39.62 -0.39 -1.34 16 8 C -0.06 -0.69 6.33 -39.32 -0.25 -0.94 16 9 Cl -0.05 -0.55 28.60 -51.86 -1.48 -2.03 16 10 C 0.10 1.28 7.27 -39.45 -0.29 0.99 16 11 F -0.13 -1.62 16.82 2.25 0.04 -1.58 16 12 C -0.09 -1.24 9.63 -39.12 -0.38 -1.62 16 13 C 0.16 2.64 2.41 -67.93 -0.16 2.47 16 14 H 0.10 1.93 6.67 -51.93 -0.35 1.58 16 15 C 0.15 2.86 5.32 -4.05 -0.02 2.83 16 16 N -0.73 -18.11 5.43 -59.91 -0.33 -18.44 16 17 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 21 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.16 -1.99 5.12 -90.62 -0.46 -2.46 16 26 C -0.18 -2.03 10.18 -26.69 -0.27 -2.30 16 27 C -0.17 -1.90 9.80 -26.69 -0.26 -2.16 16 28 H 0.07 0.93 6.85 -51.93 -0.36 0.57 16 29 H 0.07 0.67 5.99 -51.93 -0.31 0.35 16 30 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 31 H 0.16 1.95 5.52 -52.48 -0.29 1.66 16 32 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 35 H 0.03 0.58 7.48 -51.92 -0.39 0.19 16 36 H 0.39 10.47 7.07 -40.82 -0.29 10.18 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.11 1.17 6.66 -51.93 -0.35 0.82 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 41 H 0.10 1.20 7.67 -51.93 -0.40 0.80 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -32.39 367.30 -9.14 -41.53 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.12 Total: 9.34 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.18 Total: -3.76 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.01 Total: -55.24 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.39 -9.14 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700729564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.151 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds