Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00496 * 2 1 4 4 O 1.21559 * 120.00325 * 175.46900 * 3 2 1 5 5 C 1.47789 * 119.99543 * 355.47774 * 3 2 1 6 6 C 1.39628 * 120.12438 * 41.49428 * 5 3 2 7 7 C 1.37894 * 119.91764 * 179.97438 * 6 5 3 8 8 C 1.38480 * 120.16156 * 0.02622 * 7 6 5 9 9 Cl 1.73591 * 119.88063 * 179.97438 * 8 7 6 10 10 C 1.38700 * 120.23876 * 359.97438 * 8 7 6 11 11 F 1.35100 * 119.95574 * 179.97438 * 10 8 7 12 12 C 1.38132 * 120.08636 * 359.70139 * 10 8 7 13 13 C 1.46499 * 119.99619 * 180.02562 * 2 1 3 14 14 H 1.08997 * 109.47146 * 180.02562 * 13 2 1 15 15 C 1.52999 * 109.47117 * 299.99848 * 13 2 1 16 16 N 1.46494 * 109.47224 * 305.00012 * 15 13 2 17 17 C 1.36936 * 120.00187 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99707 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46915 * 90.00697 * 21 19 17 23 23 H 1.48501 * 109.47312 * 210.00110 * 21 19 17 24 24 H 1.48503 * 109.47594 * 330.00613 * 21 19 17 25 25 C 1.53003 * 109.47546 * 59.99958 * 13 2 1 26 26 C 1.52997 * 117.50011 * 111.24620 * 25 13 2 27 27 C 1.52998 * 117.50392 * 179.91280 * 25 13 2 28 28 H 1.09004 * 109.47190 * 275.17981 * 1 2 3 29 29 H 1.09005 * 109.46797 * 35.17604 * 1 2 3 30 30 H 1.08999 * 109.47349 * 155.17532 * 1 2 3 31 31 H 1.08004 * 120.04046 * 0.02562 * 6 5 3 32 32 H 1.07996 * 119.91728 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.08288 * 180.27290 * 12 10 8 34 34 H 1.09002 * 109.47149 * 65.00585 * 15 13 2 35 35 H 1.09007 * 109.46926 * 184.99805 * 15 13 2 36 36 H 0.97006 * 119.99973 * 359.97438 * 16 15 13 37 37 H 0.97003 * 119.99503 * 179.97438 * 20 19 17 38 38 H 1.09001 * 115.54461 * 325.58566 * 25 13 2 39 39 H 1.08997 * 117.50066 * 215.00476 * 26 25 13 40 40 H 1.09004 * 117.50009 * 0.03191 * 26 25 13 41 41 H 1.08998 * 117.49273 * 359.97215 * 27 25 13 42 42 H 1.08998 * 117.49973 * 144.97306 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1687 0.0832 5 6 1.4035 2.4450 -0.1009 6 6 0.2180 2.6295 0.6132 7 6 -0.4646 3.8238 0.5163 8 6 0.0227 4.8404 -0.2879 9 17 -0.8428 6.3406 -0.4050 10 6 1.1997 4.6642 -1.0002 11 9 1.6696 5.6596 -1.7835 12 6 1.8951 3.4744 -0.9053 13 6 2.1974 -1.2688 -0.0006 14 1 3.2691 -1.0697 0.0000 15 6 1.8278 -2.0716 1.2483 16 7 2.0706 -1.2575 2.4418 17 6 1.8102 -1.7698 3.6847 18 1 1.4262 -2.7742 3.7852 19 6 2.0409 -0.9985 4.8156 20 7 2.5093 0.2254 4.6932 21 14 1.6850 -1.6972 6.5111 22 1 2.8987 -2.3769 7.0310 23 1 1.3027 -0.5953 7.4303 24 1 0.5709 -2.6748 6.4198 25 6 1.8278 -2.0706 -1.2502 26 6 2.9086 -2.2535 -2.3175 27 6 2.4942 -3.4351 -1.4369 28 1 -0.3634 0.0928 1.0235 29 1 -0.3633 0.8401 -0.5921 30 1 -0.3634 -0.9327 -0.4314 31 1 -0.1636 1.8381 1.2414 32 1 -1.3818 3.9663 1.0684 33 1 2.8138 3.3390 -1.4565 34 1 0.7740 -2.3470 1.2045 35 1 2.4375 -2.9740 1.2938 36 1 2.4159 -0.3554 2.3516 37 1 2.6701 0.7644 5.4835 38 1 0.7978 -1.9627 -1.5902 39 1 2.5897 -2.2662 -3.3597 40 1 3.8832 -1.8031 -2.1293 41 1 3.1964 -3.7613 -0.6696 42 1 1.9026 -4.2251 -1.8994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700729564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -25.591412 kcal Electronic energy + Delta-G solvation = -27492.637696 eV Core-core repulsion = 23414.148381 eV Total energy + Delta-G solvation = -4078.489315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.13557 -41.69390 -39.83931 -38.65413 -37.62536 -36.60768 -35.83111 -33.30695 -32.29915 -31.82407 -29.67254 -27.93916 -26.26421 -24.99776 -24.03759 -23.65840 -22.87880 -21.69186 -20.51540 -19.13383 -19.03201 -18.26619 -17.84532 -17.57649 -17.10650 -16.90696 -16.57909 -16.33462 -15.92764 -15.39274 -15.26950 -15.07390 -14.88824 -14.71551 -14.46745 -14.15995 -14.07091 -13.83655 -13.48297 -13.15702 -13.03121 -12.91180 -12.79436 -12.77519 -12.50965 -12.38327 -12.19257 -12.08922 -12.03802 -11.76627 -11.35639 -11.06620 -10.91107 -10.88168 -10.23253 -9.87754 -9.62687 -8.98192 -7.91380 -5.21408 -0.56191 -0.11111 0.80079 1.47604 1.49577 1.51340 1.57806 1.83320 2.30373 2.56401 2.83706 2.92866 3.31725 3.41727 3.49547 3.61332 3.83066 3.90613 3.98848 4.07308 4.14587 4.26954 4.33451 4.34338 4.41712 4.51043 4.60735 4.70615 4.76092 4.79175 4.81075 4.89711 4.96397 5.02262 5.06371 5.10130 5.26285 5.30709 5.40325 5.50233 5.60849 6.27566 6.31636 7.03578 7.35104 8.10645 8.34117 9.31388 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.003897 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.644523 B = 7182.387513 C = 9417.013587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.582 5.582 3 C 0.554 3.446 4 O -0.576 6.576 5 C -0.097 4.097 6 C -0.080 4.080 7 C -0.074 4.074 8 C -0.056 4.056 9 Cl -0.038 7.038 10 C 0.097 3.903 11 F -0.128 7.128 12 C -0.096 4.096 13 C 0.170 3.830 14 H 0.066 0.934 15 C 0.149 3.851 16 N -0.742 5.742 17 C -0.241 4.241 18 H 0.079 0.921 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.293 1.293 23 H -0.297 1.297 24 H -0.264 1.264 25 C -0.164 4.164 26 C -0.174 4.174 27 C -0.161 4.161 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.180 0.820 33 H 0.149 0.851 34 H 0.040 0.960 35 H 0.028 0.972 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 3.579 -16.713 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.312 5.312 3 C 0.343 3.657 4 O -0.457 6.457 5 C -0.101 4.101 6 C -0.098 4.098 7 C -0.092 4.092 8 C -0.084 4.084 9 Cl -0.009 7.009 10 C 0.077 3.923 11 F -0.106 7.106 12 C -0.116 4.116 13 C 0.066 3.934 14 H 0.084 0.916 15 C 0.022 3.978 16 N -0.384 5.384 17 C -0.373 4.373 18 H 0.096 0.904 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.801 3.199 22 H -0.221 1.221 23 H -0.224 1.224 24 H -0.189 1.189 25 C -0.184 4.184 26 C -0.211 4.211 27 C -0.198 4.198 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.176 0.824 32 H 0.197 0.803 33 H 0.167 0.833 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.204 0.796 37 H 0.057 0.943 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.038 3.584 -16.602 19.730 hybrid contribution 0.640 0.523 1.136 1.405 sum -9.398 4.108 -15.466 18.558 Atomic orbital electron populations 1.22302 0.77480 1.05172 1.02449 1.47560 1.08324 1.04502 1.70800 1.18510 0.86654 0.84550 0.76026 1.90782 1.15634 1.87583 1.51705 1.19708 0.96398 0.93945 1.00018 1.21828 0.92357 0.98655 0.97006 1.21210 1.01524 0.89903 0.96578 1.21303 0.94277 0.91220 1.01602 1.98398 1.75073 1.30231 1.97155 1.17156 0.93901 0.86382 0.94844 1.91540 1.88029 1.59109 1.71964 1.21051 1.00278 0.90579 0.99708 1.20744 0.96138 0.82499 0.94024 0.91584 1.21099 0.98543 0.93104 0.85081 1.42522 1.78721 1.15733 1.01458 1.19619 1.34755 0.98168 0.84737 0.90359 1.25536 1.02826 0.96717 1.01431 1.69868 1.52967 1.10231 1.28837 0.85176 0.77813 0.76975 0.79986 1.22057 1.22372 1.18907 1.22459 0.99592 0.99966 0.96339 1.23057 0.98462 1.02634 0.96965 1.23014 1.03216 0.91204 1.02381 0.92357 0.88773 0.88449 0.82405 0.80273 0.83309 0.94206 0.95384 0.79650 0.94263 0.85152 0.86668 0.90515 0.89697 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 8.00 127.77 1.02 2.53 16 2 N -0.58 -18.09 2.24 -826.05 -1.85 -19.94 16 3 C 0.55 19.96 7.03 86.77 0.61 20.57 16 4 O -0.58 -26.11 16.28 -3.90 -0.06 -26.17 16 5 C -0.10 -2.83 5.15 -20.09 -0.10 -2.93 16 6 C -0.08 -1.92 7.62 22.52 0.17 -1.74 16 7 C -0.07 -1.45 9.81 22.25 0.22 -1.23 16 8 C -0.06 -1.22 6.33 22.44 0.14 -1.08 16 9 Cl -0.04 -0.74 28.60 -2.72 -0.08 -0.81 16 10 C 0.10 2.39 7.27 22.36 0.16 2.56 16 11 F -0.13 -3.21 16.82 44.97 0.76 -2.45 16 12 C -0.10 -2.60 9.63 22.57 0.22 -2.39 16 13 C 0.17 5.56 2.41 44.99 0.11 5.67 16 14 H 0.07 2.66 6.67 -2.39 -0.02 2.64 16 15 C 0.15 5.70 5.32 86.38 0.46 6.16 16 16 N -0.74 -37.49 5.43 -343.44 -1.87 -39.35 16 17 C -0.24 -13.24 9.99 84.04 0.84 -12.40 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 21 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 C -0.16 -3.81 5.12 -10.79 -0.06 -3.87 16 26 C -0.17 -3.71 10.18 30.62 0.31 -3.40 16 27 C -0.16 -3.30 9.80 30.62 0.30 -3.00 16 28 H 0.06 1.47 6.85 -2.38 -0.02 1.45 16 29 H 0.09 1.62 5.99 -2.38 -0.01 1.61 16 30 H 0.10 1.71 6.50 -2.39 -0.02 1.69 16 31 H 0.16 3.78 5.52 -2.91 -0.02 3.76 16 32 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 35 H 0.03 1.10 7.48 -2.38 -0.02 1.08 16 36 H 0.37 20.91 7.07 -92.70 -0.66 20.25 16 37 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.13 2.42 6.66 -2.39 -0.02 2.40 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 1.93 8.05 -2.38 -0.02 1.91 16 41 H 0.08 2.00 7.67 -2.39 -0.02 1.98 16 42 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -72.21 367.30 4.50 -67.71 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.42 Total: 31.18 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.87 Total: 1.76 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -3.44 Total: -119.06 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.06 Total: -26.17 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.76 Total: -2.45 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.81 kcal Total: -72.21 4.50 -67.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700729564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.123 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds