Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00209 * 2 1 4 4 O 1.21555 * 119.99898 * 175.46944 * 3 2 1 5 5 C 1.47796 * 119.99849 * 355.48225 * 3 2 1 6 6 C 1.39620 * 120.12383 * 41.45265 * 5 3 2 7 7 C 1.37887 * 119.91887 * 179.97438 * 6 5 3 8 8 C 1.38482 * 120.15909 * 0.02879 * 7 6 5 9 9 Cl 1.73598 * 119.88133 * 179.97438 * 8 7 6 10 10 C 1.38696 * 120.24400 * 359.97438 * 8 7 6 11 11 F 1.35094 * 119.96368 * 179.97438 * 10 8 7 12 12 C 1.38141 * 120.08143 * 359.70517 * 10 8 7 13 13 C 1.46501 * 119.99903 * 180.02562 * 2 1 3 14 14 H 1.09001 * 109.46761 * 180.02562 * 13 2 1 15 15 C 1.52995 * 109.47261 * 60.00068 * 13 2 1 16 16 N 1.46497 * 109.47424 * 54.99868 * 15 13 2 17 17 C 1.36939 * 119.99960 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00270 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99685 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99717 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00107 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47258 * 90.00274 * 21 19 17 23 23 H 1.48499 * 109.47300 * 210.00340 * 21 19 17 24 24 H 1.48500 * 109.47353 * 330.00300 * 21 19 17 25 25 C 1.53004 * 109.46712 * 299.99663 * 13 2 1 26 26 C 1.52995 * 117.49717 * 248.74662 * 25 13 2 27 27 C 1.53006 * 117.49541 * 180.08843 * 25 13 2 28 28 H 1.08988 * 109.47009 * 275.16695 * 1 2 3 29 29 H 1.08998 * 109.46824 * 35.16783 * 1 2 3 30 30 H 1.08998 * 109.47292 * 155.16651 * 1 2 3 31 31 H 1.08004 * 120.03982 * 0.02562 * 6 5 3 32 32 H 1.08004 * 119.92489 * 180.02562 * 7 6 5 33 33 H 1.07995 * 120.08562 * 180.27388 * 12 10 8 34 34 H 1.09001 * 109.47023 * 294.99604 * 15 13 2 35 35 H 1.09005 * 109.47134 * 175.00582 * 15 13 2 36 36 H 0.97000 * 119.99962 * 0.02562 * 16 15 13 37 37 H 0.97002 * 119.99934 * 179.97438 * 20 19 17 38 38 H 1.09001 * 115.54764 * 34.42296 * 25 13 2 39 39 H 1.09000 * 117.50537 * 0.02562 * 26 25 13 40 40 H 1.09002 * 117.49537 * 145.02950 * 26 25 13 41 41 H 1.08993 * 117.49515 * 214.98196 * 27 25 13 42 42 H 1.09000 * 117.49933 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1688 0.0832 5 6 1.4034 2.4452 -0.1008 6 6 0.2175 2.6293 0.6127 7 6 -0.4650 3.8235 0.5159 8 6 0.0227 4.8404 -0.2877 9 17 -0.8428 6.3407 -0.4047 10 6 1.2000 4.6647 -0.9994 11 9 1.6703 5.6603 -1.7821 12 6 1.8953 3.4748 -0.9047 13 6 2.1975 -1.2688 -0.0006 14 1 3.2691 -1.0695 0.0000 15 6 1.8279 -2.0705 -1.2501 16 7 2.0707 -1.2553 -2.4429 17 6 1.8113 -1.7671 -3.6863 18 1 1.4273 -2.7714 -3.7877 19 6 2.0418 -0.9948 -4.8166 20 7 1.7920 -1.4864 -6.0117 21 14 2.7052 0.7425 -4.6413 22 1 4.1897 0.7103 -4.6646 23 1 2.2105 1.5771 -5.7656 24 1 2.2428 1.3215 -3.3544 25 6 1.8278 -2.0715 1.2484 26 6 2.9087 -2.2554 2.3155 27 6 2.4944 -3.4362 1.4339 28 1 -0.3633 0.0925 1.0234 29 1 -0.3633 0.8401 -0.5919 30 1 -0.3634 -0.9326 -0.4316 31 1 -0.1643 1.8376 1.2403 32 1 -1.3821 3.9662 1.0682 33 1 2.8144 3.3395 -1.4555 34 1 0.7742 -2.3460 -1.2066 35 1 2.4376 -2.9729 -1.2964 36 1 2.4158 -0.3534 -2.3520 37 1 1.9528 -0.9467 -6.8014 38 1 0.7978 -1.9640 1.5885 39 1 3.8831 -1.8041 2.1280 40 1 2.5898 -2.2693 3.3577 41 1 1.9030 -4.2263 1.8964 42 1 3.1959 -3.7622 0.6660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700729565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -3.831285 kcal Electronic energy + Delta-G solvation = -27781.042249 eV Core-core repulsion = 23703.496524 eV Total energy + Delta-G solvation = -4077.545725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.17905 -40.67866 -38.90730 -37.62166 -36.78371 -35.46985 -34.30461 -31.77743 -31.37252 -30.81395 -28.58604 -27.00221 -24.80289 -23.66124 -23.18614 -22.44493 -21.42970 -20.73754 -19.47495 -18.07203 -17.64107 -17.32746 -16.96177 -16.54286 -16.13746 -15.93300 -15.28153 -14.97259 -14.70569 -14.32699 -14.11348 -13.90833 -13.78932 -13.49400 -13.28215 -13.24792 -12.74172 -12.61137 -12.39094 -12.11870 -12.07860 -11.89748 -11.63003 -11.59933 -11.33336 -11.24033 -10.96831 -10.80403 -10.49451 -10.21140 -9.97211 -9.86624 -9.62186 -9.37190 -8.99936 -8.93287 -8.57192 -7.26647 -5.80002 -3.15305 0.32592 0.73769 1.62781 2.50290 2.80883 3.27572 3.35210 3.40783 3.45135 3.73875 3.81681 4.23549 4.29718 4.57014 4.58980 4.60360 4.77527 4.90924 4.98108 5.10347 5.13609 5.27007 5.34132 5.37926 5.48081 5.52976 5.57692 5.59730 5.64610 5.67091 5.76205 5.81773 5.86740 5.92536 6.11952 6.14328 6.23967 6.30425 6.53072 6.71887 7.34779 7.95175 8.09437 8.38989 9.17823 9.90690 10.10163 11.38215 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.004662 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.713994 B = 6004.112696 C = 8152.299597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.586 5.586 3 C 0.560 3.440 4 O -0.529 6.529 5 C -0.086 4.086 6 C -0.092 4.092 7 C -0.089 4.089 8 C -0.058 4.058 9 Cl -0.047 7.047 10 C 0.107 3.893 11 F -0.122 7.122 12 C -0.089 4.089 13 C 0.158 3.842 14 H 0.103 0.897 15 C 0.152 3.848 16 N -0.752 5.752 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.932 5.932 21 Si 0.878 3.122 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.279 1.279 25 C -0.159 4.159 26 C -0.178 4.178 27 C -0.168 4.168 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.032 0.968 35 H 0.041 0.959 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 8.057 19.391 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.317 5.317 3 C 0.347 3.653 4 O -0.406 6.406 5 C -0.089 4.089 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.086 4.086 9 Cl -0.018 7.018 10 C 0.087 3.913 11 F -0.100 7.100 12 C -0.108 4.108 13 C 0.055 3.945 14 H 0.121 0.879 15 C 0.024 3.976 16 N -0.398 5.398 17 C -0.374 4.374 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.580 5.580 21 Si 0.709 3.291 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.206 4.206 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.838 8.055 19.191 21.617 hybrid contribution 0.335 1.612 -0.310 1.675 sum -5.503 9.666 18.881 21.914 Atomic orbital electron populations 1.22097 0.79499 1.04943 1.00703 1.47547 1.07174 1.05295 1.71681 1.18077 0.87037 0.83345 0.76832 1.90801 1.13220 1.86941 1.49601 1.19851 0.95777 0.94667 0.98650 1.21624 0.93101 0.97557 0.98764 1.20902 1.00785 0.91216 0.97845 1.21196 0.94508 0.90859 1.02037 1.98396 1.75421 1.30734 1.97230 1.17190 0.93394 0.86720 0.94006 1.91567 1.87804 1.58896 1.71767 1.21204 1.00659 0.90281 0.98698 1.21080 0.97866 0.81819 0.93731 0.87893 1.20933 0.98681 0.93418 0.84595 1.42643 1.80240 1.14739 1.02186 1.19021 1.36816 0.99904 0.81620 0.89119 1.24617 1.01280 0.97694 0.95119 1.69690 1.54478 1.36909 0.96912 0.86647 0.79395 0.86309 0.76782 1.20927 1.21605 1.20559 1.22484 0.98196 0.99624 0.97552 1.23028 0.99617 1.02918 0.95937 1.22951 1.03656 0.91061 1.02910 0.92541 0.90699 0.89549 0.83018 0.83199 0.82899 0.95050 0.94133 0.80577 0.93027 0.87510 0.88643 0.89078 0.88649 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 7.84 59.85 0.47 1.25 16 2 N -0.59 -8.53 2.24 -175.07 -0.39 -8.92 16 3 C 0.56 9.12 7.03 -12.35 -0.09 9.04 16 4 O -0.53 -10.30 16.28 5.32 0.09 -10.22 16 5 C -0.09 -1.19 5.16 -104.97 -0.54 -1.73 16 6 C -0.09 -0.91 7.62 -39.19 -0.30 -1.21 16 7 C -0.09 -0.81 9.81 -39.62 -0.39 -1.20 16 8 C -0.06 -0.66 6.33 -39.32 -0.25 -0.91 16 9 Cl -0.05 -0.49 28.60 -51.86 -1.48 -1.97 16 10 C 0.11 1.45 7.27 -39.45 -0.29 1.16 16 11 F -0.12 -1.74 16.82 2.25 0.04 -1.70 16 12 C -0.09 -1.30 9.63 -39.12 -0.38 -1.68 16 13 C 0.16 2.40 2.41 -67.93 -0.16 2.24 16 14 H 0.10 1.80 6.66 -51.93 -0.35 1.45 16 15 C 0.15 2.78 5.29 -4.05 -0.02 2.76 16 16 N -0.75 -17.75 5.24 -59.91 -0.31 -18.06 16 17 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 21 Si 0.88 22.85 27.73 -169.99 -4.71 18.13 16 22 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 24 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 25 C -0.16 -1.84 5.21 -90.62 -0.47 -2.31 16 26 C -0.18 -1.89 10.18 -26.69 -0.27 -2.16 16 27 C -0.17 -1.77 9.80 -26.69 -0.26 -2.04 16 28 H 0.06 0.42 6.85 -51.94 -0.36 0.07 16 29 H 0.07 0.84 5.99 -51.93 -0.31 0.53 16 30 H 0.09 1.01 6.53 -51.93 -0.34 0.67 16 31 H 0.15 1.09 5.52 -52.48 -0.29 0.80 16 32 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 35 H 0.04 0.75 7.48 -51.93 -0.39 0.37 16 36 H 0.36 8.73 4.93 -40.82 -0.20 8.53 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 38 H 0.11 1.07 7.49 -51.93 -0.39 0.69 16 39 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -33.59 363.96 -8.80 -42.38 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.07 Total: 7.05 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.20 Total: -3.62 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.07 Total: -55.53 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.59 -8.80 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700729565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.552 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds