Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00209 * 2 1 4 4 O 1.21555 * 119.99898 * 175.46944 * 3 2 1 5 5 C 1.47796 * 119.99849 * 355.48225 * 3 2 1 6 6 C 1.39620 * 120.12383 * 41.45265 * 5 3 2 7 7 C 1.37887 * 119.91887 * 179.97438 * 6 5 3 8 8 C 1.38482 * 120.15909 * 0.02879 * 7 6 5 9 9 Cl 1.73598 * 119.88133 * 179.97438 * 8 7 6 10 10 C 1.38696 * 120.24400 * 359.97438 * 8 7 6 11 11 F 1.35094 * 119.96368 * 179.97438 * 10 8 7 12 12 C 1.38141 * 120.08143 * 359.70517 * 10 8 7 13 13 C 1.46501 * 119.99903 * 180.02562 * 2 1 3 14 14 H 1.09001 * 109.46761 * 180.02562 * 13 2 1 15 15 C 1.52995 * 109.47261 * 60.00068 * 13 2 1 16 16 N 1.46497 * 109.47424 * 54.99868 * 15 13 2 17 17 C 1.36939 * 119.99960 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00270 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99685 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99717 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00107 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47258 * 90.00274 * 21 19 17 23 23 H 1.48499 * 109.47300 * 210.00340 * 21 19 17 24 24 H 1.48500 * 109.47353 * 330.00300 * 21 19 17 25 25 C 1.53004 * 109.46712 * 299.99663 * 13 2 1 26 26 C 1.52995 * 117.49717 * 248.74662 * 25 13 2 27 27 C 1.53006 * 117.49541 * 180.08843 * 25 13 2 28 28 H 1.08988 * 109.47009 * 275.16695 * 1 2 3 29 29 H 1.08998 * 109.46824 * 35.16783 * 1 2 3 30 30 H 1.08998 * 109.47292 * 155.16651 * 1 2 3 31 31 H 1.08004 * 120.03982 * 0.02562 * 6 5 3 32 32 H 1.08004 * 119.92489 * 180.02562 * 7 6 5 33 33 H 1.07995 * 120.08562 * 180.27388 * 12 10 8 34 34 H 1.09001 * 109.47023 * 294.99604 * 15 13 2 35 35 H 1.09005 * 109.47134 * 175.00582 * 15 13 2 36 36 H 0.97000 * 119.99962 * 0.02562 * 16 15 13 37 37 H 0.97002 * 119.99934 * 179.97438 * 20 19 17 38 38 H 1.09001 * 115.54764 * 34.42296 * 25 13 2 39 39 H 1.09000 * 117.50537 * 0.02562 * 26 25 13 40 40 H 1.09002 * 117.49537 * 145.02950 * 26 25 13 41 41 H 1.08993 * 117.49515 * 214.98196 * 27 25 13 42 42 H 1.09000 * 117.49933 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1688 0.0832 5 6 1.4034 2.4452 -0.1008 6 6 0.2175 2.6293 0.6127 7 6 -0.4650 3.8235 0.5159 8 6 0.0227 4.8404 -0.2877 9 17 -0.8428 6.3407 -0.4047 10 6 1.2000 4.6647 -0.9994 11 9 1.6703 5.6603 -1.7821 12 6 1.8953 3.4748 -0.9047 13 6 2.1975 -1.2688 -0.0006 14 1 3.2691 -1.0695 0.0000 15 6 1.8279 -2.0705 -1.2501 16 7 2.0707 -1.2553 -2.4429 17 6 1.8113 -1.7671 -3.6863 18 1 1.4273 -2.7714 -3.7877 19 6 2.0418 -0.9948 -4.8166 20 7 1.7920 -1.4864 -6.0117 21 14 2.7052 0.7425 -4.6413 22 1 4.1897 0.7103 -4.6646 23 1 2.2105 1.5771 -5.7656 24 1 2.2428 1.3215 -3.3544 25 6 1.8278 -2.0715 1.2484 26 6 2.9087 -2.2554 2.3155 27 6 2.4944 -3.4362 1.4339 28 1 -0.3633 0.0925 1.0234 29 1 -0.3633 0.8401 -0.5919 30 1 -0.3634 -0.9326 -0.4316 31 1 -0.1643 1.8376 1.2403 32 1 -1.3821 3.9662 1.0682 33 1 2.8144 3.3395 -1.4555 34 1 0.7742 -2.3460 -1.2066 35 1 2.4376 -2.9729 -1.2964 36 1 2.4158 -0.3534 -2.3520 37 1 1.9528 -0.9467 -6.8014 38 1 0.7978 -1.9640 1.5885 39 1 3.8831 -1.8041 2.1280 40 1 2.5898 -2.2693 3.3577 41 1 1.9030 -4.2263 1.8964 42 1 3.1959 -3.7622 0.6660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700729565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -23.955226 kcal Electronic energy + Delta-G solvation = -27781.914889 eV Core-core repulsion = 23703.496524 eV Total energy + Delta-G solvation = -4078.418365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.21563 -41.78236 -39.89668 -38.70826 -37.66744 -36.74827 -35.95686 -33.60223 -32.40508 -31.98048 -30.00089 -28.02301 -26.29113 -24.93286 -24.09302 -23.55868 -22.81657 -21.75635 -20.74431 -19.59967 -19.11715 -18.35418 -17.91223 -17.58433 -17.20051 -16.97949 -16.68909 -16.47481 -15.87975 -15.79432 -15.22054 -15.13225 -14.95236 -14.78629 -14.53825 -14.29674 -14.17433 -13.81688 -13.61174 -13.47897 -13.11913 -13.10351 -12.96707 -12.86529 -12.55400 -12.35676 -12.26197 -12.13424 -12.04976 -11.89495 -11.41563 -11.10048 -11.02308 -10.90574 -10.28775 -9.93505 -9.69858 -9.34717 -8.09977 -5.40541 -0.61877 -0.16915 0.76410 1.23326 1.28443 1.31755 1.38436 1.75082 2.29117 2.37216 2.80585 2.89948 3.22710 3.23850 3.41575 3.45920 3.76018 3.83967 3.92279 3.98039 4.11437 4.20152 4.22810 4.27036 4.38946 4.49246 4.54262 4.64181 4.73275 4.78055 4.79964 4.86806 4.92751 4.97362 5.06088 5.10408 5.25423 5.32385 5.35738 5.51329 5.71360 6.14772 6.22727 6.92203 7.00866 7.78208 7.94855 9.11544 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.004662 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.713994 B = 6004.112696 C = 8152.299597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.585 5.585 3 C 0.551 3.449 4 O -0.576 6.576 5 C -0.104 4.104 6 C -0.070 4.070 7 C -0.069 4.069 8 C -0.058 4.058 9 Cl -0.037 7.037 10 C 0.088 3.912 11 F -0.134 7.134 12 C -0.114 4.114 13 C 0.166 3.834 14 H 0.073 0.927 15 C 0.148 3.852 16 N -0.757 5.757 17 C -0.222 4.222 18 H 0.069 0.931 19 C -0.050 4.050 20 N -0.976 5.976 21 Si 0.933 3.067 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.264 1.264 25 C -0.160 4.160 26 C -0.172 4.172 27 C -0.166 4.166 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.189 0.811 32 H 0.194 0.806 33 H 0.127 0.873 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.358 0.642 37 H 0.257 0.743 38 H 0.135 0.865 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 8.387 22.813 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.314 5.314 3 C 0.340 3.660 4 O -0.457 6.457 5 C -0.107 4.107 6 C -0.089 4.089 7 C -0.087 4.087 8 C -0.086 4.086 9 Cl -0.008 7.008 10 C 0.068 3.932 11 F -0.113 7.113 12 C -0.134 4.134 13 C 0.063 3.937 14 H 0.091 0.909 15 C 0.022 3.978 16 N -0.402 5.402 17 C -0.353 4.353 18 H 0.087 0.913 19 C -0.242 4.242 20 N -0.627 5.627 21 Si 0.762 3.238 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.190 1.190 25 C -0.179 4.179 26 C -0.209 4.209 27 C -0.203 4.203 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.206 0.794 32 H 0.212 0.788 33 H 0.145 0.855 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.191 0.809 37 H 0.067 0.933 38 H 0.153 0.847 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.623 8.372 22.668 25.657 hybrid contribution 1.155 1.427 -1.314 2.258 sum -7.468 9.798 21.353 24.653 Atomic orbital electron populations 1.22449 0.77081 1.04829 1.03871 1.47679 1.08676 1.04434 1.70657 1.18525 0.86721 0.84524 0.76207 1.90769 1.15329 1.87684 1.51884 1.19787 0.97468 0.93277 1.00209 1.21989 0.90948 0.98672 0.97250 1.21397 1.01442 0.89615 0.96256 1.21404 0.93679 0.91844 1.01630 1.98404 1.74872 1.30353 1.97183 1.17308 0.94537 0.86280 0.95039 1.91527 1.88173 1.59238 1.72317 1.21093 1.00586 0.91671 1.00087 1.20830 0.96493 0.82390 0.94028 0.90913 1.21152 0.99395 0.93187 0.84078 1.42725 1.80008 1.15094 1.02382 1.19055 1.34212 0.98714 0.83340 0.91264 1.25203 1.02888 1.01072 0.95031 1.69820 1.56939 1.38331 0.97627 0.85753 0.78205 0.82603 0.77220 1.21687 1.21731 1.18975 1.22418 0.99786 0.99625 0.96047 1.23051 0.98463 1.02375 0.96974 1.23028 1.03371 0.91367 1.02554 0.87550 0.90660 0.89949 0.79376 0.78848 0.85504 0.93402 0.94365 0.80916 0.93333 0.84748 0.90492 0.86608 0.86231 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 7.84 127.77 1.00 2.07 16 2 N -0.58 -15.87 2.24 -826.08 -1.85 -17.73 16 3 C 0.55 17.66 7.03 86.77 0.61 18.27 16 4 O -0.58 -23.20 16.28 -3.89 -0.06 -23.27 16 5 C -0.10 -2.74 5.16 -20.09 -0.10 -2.85 16 6 C -0.07 -1.11 7.62 22.52 0.17 -0.93 16 7 C -0.07 -0.94 9.81 22.24 0.22 -0.72 16 8 C -0.06 -1.17 6.33 22.44 0.14 -1.02 16 9 Cl -0.04 -0.69 28.60 -2.72 -0.08 -0.77 16 10 C 0.09 2.36 7.27 22.36 0.16 2.52 16 11 F -0.13 -3.90 16.82 44.97 0.76 -3.14 16 12 C -0.11 -3.43 9.63 22.57 0.22 -3.21 16 13 C 0.17 4.87 2.41 44.99 0.11 4.98 16 14 H 0.07 2.60 6.66 -2.39 -0.02 2.58 16 15 C 0.15 5.32 5.29 86.38 0.46 5.77 16 16 N -0.76 -35.74 5.24 -343.45 -1.80 -37.54 16 17 C -0.22 -12.62 10.47 84.03 0.88 -11.74 16 18 H 0.07 4.20 8.06 -2.91 -0.02 4.17 16 19 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 20 N -0.98 -62.93 13.97 21.65 0.30 -62.62 16 21 Si 0.93 48.57 27.73 68.60 1.90 50.47 16 22 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 23 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.26 -12.92 6.52 99.48 0.65 -12.27 16 25 C -0.16 -3.22 5.21 -10.79 -0.06 -3.27 16 26 C -0.17 -3.22 10.18 30.62 0.31 -2.91 16 27 C -0.17 -3.09 9.80 30.62 0.30 -2.79 16 28 H 0.11 0.90 6.85 -2.39 -0.02 0.88 16 29 H 0.07 1.40 5.99 -2.39 -0.01 1.38 16 30 H 0.08 1.61 6.53 -2.39 -0.02 1.59 16 31 H 0.19 1.51 5.52 -2.91 -0.02 1.50 16 32 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 33 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.05 1.60 6.86 -2.39 -0.02 1.58 16 35 H 0.04 1.41 7.48 -2.38 -0.02 1.39 16 36 H 0.36 17.41 4.93 -92.71 -0.46 16.95 16 37 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.13 2.01 7.49 -2.39 -0.02 1.99 16 39 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.84 7.67 -2.39 -0.02 1.83 16 Total: -1.00 -77.52 363.96 4.61 -72.91 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.56 Total: 20.04 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 4.89 Total: 1.65 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -3.35 Total: -117.89 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.76 Total: -3.14 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.90 Total: 50.47 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -77.52 4.61 -72.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700729565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.954 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds