Wall clock time and date at job start Sat Apr 11 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99992 * 2 1 4 4 C 1.53005 * 109.47008 * 270.00013 * 3 2 1 5 5 N 1.46900 * 109.47039 * 180.02562 * 4 3 2 6 6 C 1.46894 * 110.99888 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47268 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00245 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00161 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99998 * 359.97438 * 10 9 7 12 12 C 1.38954 * 120.00344 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99375 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00218 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47263 * 89.99457 * 14 12 10 16 16 H 1.48495 * 109.47179 * 209.99800 * 14 12 10 17 17 H 1.48495 * 109.47056 * 329.99785 * 14 12 10 18 18 C 1.34779 * 119.99867 * 179.97438 * 2 1 3 19 19 O 1.21524 * 119.99809 * 182.09106 * 18 2 1 20 20 C 1.48102 * 119.99902 * 2.09541 * 18 2 1 21 21 C 1.39352 * 119.70720 * 172.79997 * 20 18 2 22 22 C 1.38518 * 119.08001 * 179.97438 * 21 20 18 23 23 C 1.38774 * 118.47930 * 359.97438 * 22 21 20 24 24 Cl 1.73593 * 120.33792 * 179.97438 * 23 22 21 25 25 C 1.38720 * 119.31878 * 0.02562 * 23 22 21 26 26 N 1.31488 * 120.88425 * 0.02562 * 25 23 22 27 27 H 1.08993 * 109.47326 * 263.77669 * 1 2 3 28 28 H 1.08999 * 109.47034 * 23.78169 * 1 2 3 29 29 H 1.09005 * 109.46787 * 143.77734 * 1 2 3 30 30 H 1.09003 * 109.46992 * 29.99736 * 3 2 1 31 31 H 1.08996 * 109.47096 * 149.99512 * 3 2 1 32 32 H 1.09000 * 109.46516 * 299.99629 * 4 3 2 33 33 H 1.08991 * 109.47139 * 59.99814 * 4 3 2 34 34 H 1.00909 * 111.00024 * 56.04229 * 5 4 3 35 35 H 1.09001 * 109.47593 * 299.99634 * 6 5 4 36 36 H 1.09002 * 109.47517 * 59.99672 * 6 5 4 37 37 H 0.96999 * 120.00083 * 0.02562 * 9 7 6 38 38 H 0.97005 * 119.99697 * 180.02562 * 13 12 10 39 39 H 1.08004 * 120.45802 * 0.25232 * 21 20 18 40 40 H 1.08004 * 120.76333 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.55574 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1876 2.9823 -1.4426 6 6 3.4513 3.4378 -2.8140 7 6 4.2056 4.7418 -2.7738 8 8 4.4946 5.2427 -1.7076 9 7 4.5591 5.3515 -3.9226 10 6 5.2449 6.5381 -3.8861 11 1 5.5015 6.9845 -2.9367 12 6 5.6089 7.1670 -5.0705 13 7 5.2961 6.6240 -6.2256 14 14 6.5439 8.7833 -5.0207 15 1 8.0035 8.5107 -5.0072 16 1 6.2021 9.5901 -6.2196 17 1 6.1693 9.5343 -3.7956 18 6 2.1389 -1.1672 0.0005 19 8 3.3536 -1.1676 0.0389 20 6 1.3991 -2.4494 -0.0458 21 6 2.0985 -3.6452 -0.1968 22 6 1.3936 -4.8369 -0.2379 23 6 0.0111 -4.7921 -0.1260 24 17 -0.9202 -6.2563 -0.1722 25 6 -0.6191 -3.5652 0.0221 26 7 0.0758 -2.4494 0.0569 27 1 -0.3633 -0.1114 1.0215 28 1 -0.3633 0.9404 -0.4144 29 1 -0.3633 -0.8291 -0.6073 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 3.0417 0.9507 -1.9563 33 1 1.5002 1.8407 -1.9564 34 1 4.0451 2.9043 -0.9165 35 1 4.0472 2.6899 -3.3371 36 1 2.5060 3.5804 -3.3376 37 1 4.3277 4.9512 -4.7753 38 1 5.5506 7.0629 -7.0525 39 1 3.1756 -3.6432 -0.2760 40 1 1.9081 -5.7794 -0.3537 41 1 -1.6948 -3.5258 0.1091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713656169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:06 Heat of formation + Delta-G solvation = -40.510097 kcal Electronic energy + Delta-G solvation = -25467.938787 eV Core-core repulsion = 21408.722511 eV Total energy + Delta-G solvation = -4059.216276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 4.97 seconds Orbital eigenvalues (eV) -41.97900 -40.34658 -40.09719 -37.75203 -37.59592 -36.32531 -35.74483 -33.74874 -33.28509 -32.58337 -30.82069 -28.10112 -27.57299 -26.13673 -25.04391 -24.71667 -23.23772 -21.34444 -20.92474 -19.91968 -18.69745 -18.32554 -17.93333 -17.64829 -17.16891 -16.92266 -16.66445 -16.51259 -16.10027 -15.83361 -15.43005 -15.22314 -15.12736 -14.80858 -14.63233 -14.28768 -14.00212 -13.83345 -13.68147 -13.53584 -13.36139 -13.18518 -13.02839 -12.85981 -12.72494 -12.42311 -12.27401 -12.11707 -12.11365 -11.51641 -11.50576 -11.05481 -10.45056 -10.36863 -10.16988 -10.02876 -9.73740 -9.44938 -8.47348 -5.96437 -0.70476 -0.02197 0.85499 1.38189 1.42004 1.47175 1.55153 1.74880 2.03064 2.29444 2.55749 2.83429 3.00996 3.19551 3.45170 3.56247 3.58971 3.72489 3.85150 3.96766 4.07421 4.27810 4.42864 4.45834 4.46967 4.55630 4.55820 4.62119 4.73177 4.79325 4.84442 4.94545 5.09944 5.30276 5.40348 5.48746 5.81337 6.04409 6.17231 6.27154 6.43101 6.58564 6.92364 7.11257 7.54177 8.09318 8.70064 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.031230 B = 0.001551 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.356613 B =18051.765951 C =18257.243461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.590 5.590 3 C 0.120 3.880 4 C 0.056 3.944 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.995 3.005 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.273 1.273 18 C 0.558 3.442 19 O -0.569 6.569 20 C 0.065 3.935 21 C -0.102 4.102 22 C -0.064 4.064 23 C -0.068 4.068 24 Cl -0.036 7.036 25 C 0.109 3.891 26 N -0.439 5.439 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.087 0.913 34 H 0.344 0.656 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.503 -28.240 9.961 34.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.320 5.320 3 C -0.004 4.004 4 C -0.074 4.074 5 N -0.307 5.307 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.209 5.209 10 C -0.466 4.466 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.197 1.197 18 C 0.346 3.654 19 O -0.448 6.448 20 C -0.072 4.072 21 C -0.123 4.123 22 C -0.090 4.090 23 C -0.097 4.097 24 Cl -0.007 7.007 25 C -0.051 4.051 26 N -0.152 5.152 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.174 0.826 40 H 0.195 0.805 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.720 -26.741 10.656 33.289 hybrid contribution 1.579 -0.799 -0.940 2.004 sum -15.141 -27.540 9.716 32.895 Atomic orbital electron populations 1.22572 0.75890 1.04497 1.03796 1.47806 1.09279 1.04687 1.70233 1.21391 0.98177 0.84470 0.96314 1.22237 0.98987 0.88697 0.97472 1.60035 1.28211 1.29789 1.12691 1.21526 1.00552 0.93105 0.91449 1.20795 0.84205 0.88597 0.83889 1.90490 1.60662 1.68746 1.30946 1.41919 1.50285 1.21209 1.07496 1.19700 1.33163 0.99457 0.94258 0.90234 1.26068 0.98394 1.02867 0.93929 1.69679 1.47158 1.41311 0.97935 0.84896 0.78215 0.77042 0.77988 1.19659 1.19441 1.19733 1.18289 0.86328 0.84011 0.76799 1.90797 1.14462 1.87396 1.52131 1.21063 0.90710 0.93682 1.01733 1.22206 1.02877 0.90877 0.96367 1.21853 0.92046 1.00035 0.95073 1.22497 0.93584 0.90242 1.03407 1.98425 1.72333 1.33592 1.96350 1.23466 1.02337 0.85097 0.94205 1.68248 1.06328 1.29192 1.11391 0.91530 0.90509 0.87205 0.87687 0.91218 0.96009 0.89437 0.83727 0.92063 0.87359 0.76955 0.91259 0.82636 0.80462 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 9.30 127.77 1.19 2.25 16 2 N -0.59 -12.37 2.87 -849.88 -2.44 -14.81 16 3 C 0.12 2.80 5.66 86.38 0.49 3.28 16 4 C 0.06 1.45 6.01 86.30 0.52 1.97 16 5 N -0.67 -22.37 6.13 -517.95 -3.17 -25.54 16 6 C 0.07 2.37 6.17 85.56 0.53 2.90 16 7 C 0.44 21.43 7.82 87.66 0.69 22.12 16 8 O -0.62 -35.29 15.78 -3.07 -0.05 -35.34 16 9 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 10 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 11 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 13 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 14 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C 0.56 13.44 7.66 86.86 0.67 14.11 16 19 O -0.57 -17.62 15.91 -3.79 -0.06 -17.68 16 20 C 0.06 1.17 6.62 41.90 0.28 1.45 16 21 C -0.10 -1.49 9.63 22.60 0.22 -1.27 16 22 C -0.06 -0.60 9.97 22.47 0.22 -0.38 16 23 C -0.07 -0.61 6.35 22.51 0.14 -0.47 16 24 Cl -0.04 -0.28 28.99 -2.72 -0.08 -0.35 16 25 C 0.11 1.01 10.98 84.86 0.93 1.94 16 26 N -0.44 -6.16 6.03 -184.83 -1.12 -7.28 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.95 8.02 -2.39 -0.02 0.93 16 29 H 0.11 1.50 5.26 -2.71 -0.01 1.49 16 30 H 0.10 2.19 8.07 -2.39 -0.02 2.18 16 31 H 0.07 1.88 7.39 -2.39 -0.02 1.87 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.34 12.25 8.43 -89.69 -0.76 11.50 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.40 19.72 7.90 -92.71 -0.73 18.98 16 38 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 39 H 0.16 2.30 7.66 -2.91 -0.02 2.27 16 40 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -73.30 371.30 0.52 -72.78 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.40 Total: 35.25 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 7.15 Total: 29.06 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -8.07 Total: -129.13 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -0.11 Total: -53.02 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.35 kcal Total: -73.30 0.52 -72.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713656169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.271 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.97 seconds