Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.80016 * 2 1 4 4 C 1.54940 * 110.74268 * 123.29867 * 2 1 3 5 5 N 1.48112 * 103.25963 * 155.71576 * 4 2 1 6 6 C 1.34775 * 127.03901 * 140.67528 * 5 4 2 7 7 O 1.21546 * 120.00285 * 176.29023 * 6 5 4 8 8 C 1.47850 * 119.99625 * 356.28131 * 6 5 4 9 9 C 1.39567 * 120.12662 * 214.26656 * 8 6 5 10 10 C 1.38185 * 119.85296 * 179.79509 * 9 8 6 11 11 F 1.35103 * 119.94518 * 180.23369 * 10 9 8 12 12 C 1.38569 * 120.10515 * 0.48543 * 10 9 8 13 13 C 1.38409 * 120.25764 * 359.74886 * 12 10 9 14 14 Cl 1.73598 * 119.92669 * 180.02562 * 13 12 10 15 15 C 1.38112 * 120.14450 * 0.02562 * 13 12 10 16 16 C 1.47485 * 105.93033 * 320.70308 * 5 4 2 17 17 C 1.54006 * 107.08271 * 25.44942 * 16 5 4 18 18 H 1.08998 * 110.32981 * 239.79573 * 17 16 5 19 19 C 1.53003 * 110.32800 * 117.58456 * 17 16 5 20 20 N 1.46503 * 109.47068 * 66.45244 * 19 17 16 21 21 C 1.36933 * 119.99948 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00031 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00160 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99833 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00363 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47061 * 59.99822 * 25 23 21 27 27 H 1.48503 * 109.47425 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47256 * 300.00211 * 25 23 21 29 29 H 1.08997 * 109.47110 * 183.28776 * 1 2 3 30 30 H 1.09000 * 109.47165 * 303.28382 * 1 2 3 31 31 H 1.08997 * 109.47009 * 63.28475 * 1 2 3 32 32 H 1.08999 * 110.66185 * 37.26889 * 4 2 1 33 33 H 1.09008 * 110.80366 * 274.22420 * 4 2 1 34 34 H 1.07995 * 120.07530 * 0.02892 * 9 8 6 35 35 H 1.08002 * 119.87363 * 179.76917 * 12 10 9 36 36 H 1.08001 * 120.05255 * 179.97438 * 15 13 12 37 37 H 1.09000 * 109.92060 * 266.08863 * 16 5 4 38 38 H 1.09004 * 110.07748 * 144.89484 * 16 5 4 39 39 H 1.08998 * 109.47444 * 186.45329 * 19 17 16 40 40 H 1.09005 * 109.47165 * 306.45917 * 19 17 16 41 41 H 0.96999 * 120.00303 * 359.97438 * 20 19 17 42 42 H 0.97003 * 120.00246 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7955 1.2111 5 7 3.4279 -1.2099 0.7621 6 6 4.5538 -1.2473 1.5020 7 8 5.5843 -1.6747 1.0194 8 6 4.5355 -0.7682 2.9006 9 6 5.6564 -0.1342 3.4386 10 6 5.6316 0.3151 4.7451 11 9 6.7140 0.9333 5.2663 12 6 4.5003 0.1281 5.5231 13 6 3.3879 -0.5044 4.9956 14 17 1.9749 -0.7337 5.9777 15 6 3.3996 -0.9536 3.6896 16 6 3.2875 -1.5728 -0.6605 17 6 2.0775 -0.7936 -1.2088 18 1 1.3210 -1.4833 -1.5830 19 6 2.5199 0.1641 -2.3170 20 7 2.9886 -0.6075 -3.4708 21 6 3.4376 0.0401 -4.5907 22 1 3.4467 1.1196 -4.6232 23 6 3.8812 -0.6909 -5.6842 24 7 3.8697 -2.0064 -5.6448 25 14 4.4932 0.1924 -7.2121 26 1 5.6540 1.0480 -6.8578 27 1 4.9078 -0.8072 -8.2292 28 1 3.4048 1.0386 -7.7640 29 1 -0.3633 -1.0259 0.0589 30 1 -0.3633 0.5640 0.8591 31 1 -0.3633 0.4620 -0.9179 32 1 1.4559 -1.6670 1.4129 33 1 2.1456 -0.1595 2.0938 34 1 6.5399 0.0083 2.8340 35 1 4.4863 0.4774 6.5449 36 1 2.5309 -1.4473 3.2796 37 1 3.1125 -2.6445 -0.7549 38 1 4.1876 -1.2941 -1.2084 39 1 1.6777 0.7885 -2.6153 40 1 3.3286 0.7959 -1.9498 41 1 2.9815 -1.5770 -3.4413 42 1 4.1801 -2.5173 -6.4087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716988721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = -43.253148 kcal Electronic energy + Delta-G solvation = -26786.892442 eV Core-core repulsion = 22707.637257 eV Total energy + Delta-G solvation = -4079.255185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.39006 -40.74089 -39.10960 -37.88333 -36.89032 -34.72920 -33.06731 -31.81494 -31.40284 -31.01453 -28.99831 -26.70280 -25.86276 -24.22691 -23.27251 -23.06371 -21.21555 -20.39346 -19.63447 -18.20208 -17.26015 -17.12040 -16.94693 -16.33694 -16.11994 -16.02724 -15.51339 -15.01563 -14.78807 -14.37648 -14.16678 -13.90194 -13.66832 -13.61715 -13.35515 -12.93915 -12.86649 -12.77140 -12.45950 -12.21540 -11.98430 -11.88766 -11.72827 -11.60640 -11.47272 -11.09200 -10.87468 -10.64656 -10.54451 -10.37375 -10.09762 -10.02000 -9.66762 -9.53278 -9.25433 -8.88312 -8.71068 -6.93354 -5.76084 -3.05267 0.19903 0.44617 1.44566 2.37391 2.70125 3.13156 3.45077 3.49496 3.50460 3.70502 3.97020 4.28645 4.39191 4.46136 4.52518 4.58597 4.69872 4.79416 4.83057 5.15733 5.24241 5.25148 5.36206 5.39826 5.45094 5.46917 5.57390 5.58656 5.65920 5.72690 5.92083 6.02601 6.08360 6.10266 6.14052 6.20754 6.37358 6.40226 6.68990 6.82536 7.41696 7.69732 7.98322 8.42413 9.53712 10.09956 10.44476 11.46608 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.002608 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.309624 B =10732.181830 C =11850.978494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.090 3.910 5 N -0.609 5.609 6 C 0.573 3.427 7 O -0.521 6.521 8 C -0.076 4.076 9 C -0.096 4.096 10 C 0.112 3.888 11 F -0.127 7.127 12 C -0.129 4.129 13 C -0.014 4.014 14 Cl -0.049 7.049 15 C -0.098 4.098 16 C 0.112 3.888 17 C -0.103 4.103 18 H 0.089 0.911 19 C 0.163 3.837 20 N -0.732 5.732 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 3.401 26.271 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.033 4.033 5 N -0.342 5.342 6 C 0.361 3.639 7 O -0.398 6.398 8 C -0.080 4.080 9 C -0.115 4.115 10 C 0.092 3.908 11 F -0.105 7.105 12 C -0.149 4.149 13 C -0.041 4.041 14 Cl -0.020 7.020 15 C -0.117 4.117 16 C -0.010 4.010 17 C -0.122 4.122 18 H 0.107 0.893 19 C 0.035 3.965 20 N -0.377 5.377 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.218 0.782 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.360 3.273 26.025 26.772 hybrid contribution 0.401 0.225 -0.658 0.803 sum -4.959 3.498 25.367 26.083 Atomic orbital electron populations 1.21735 0.93668 1.02103 1.02283 1.22300 0.96190 0.99758 0.93674 0.89583 1.23040 0.82976 0.98962 0.98303 1.48688 1.07826 1.65076 1.12580 1.17565 0.82647 0.79243 0.84494 1.90867 1.30718 1.46083 1.72091 1.19672 0.93638 1.00071 0.94583 1.21321 0.99435 0.96922 0.93869 1.17229 0.84235 0.97336 0.91972 1.91567 1.52317 1.80023 1.86621 1.21135 0.91326 1.00848 1.01574 1.20444 0.89679 1.01741 0.92273 1.98407 1.38257 1.95647 1.69710 1.21557 0.98618 0.99516 0.91983 1.22258 1.00652 0.99082 0.78973 1.22411 0.96523 0.98002 0.95282 0.89300 1.20699 0.96178 0.92790 0.86839 1.42353 1.77045 1.05688 1.12593 1.19153 1.34813 0.91195 0.92122 0.91289 1.24734 1.02136 0.95467 0.98482 1.69640 1.53171 1.04138 1.31140 0.86270 0.78673 0.78307 0.82941 1.21260 1.21669 1.21281 0.92331 0.92594 0.91629 0.90264 0.89737 0.82780 0.83136 0.82993 0.91313 0.88797 0.95956 0.96291 0.78234 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.16 37.16 0.34 -0.89 16 2 C -0.10 -1.08 3.21 -88.75 -0.28 -1.36 16 3 H 0.09 0.98 7.86 -51.93 -0.41 0.57 16 4 C 0.09 0.86 4.75 -2.13 -0.01 0.85 16 5 N -0.61 -8.15 3.29 -170.87 -0.56 -8.71 16 6 C 0.57 8.36 7.59 -12.33 -0.09 8.26 16 7 O -0.52 -9.79 17.18 5.33 0.09 -9.70 16 8 C -0.08 -0.84 5.60 -104.98 -0.59 -1.43 16 9 C -0.10 -1.01 9.59 -39.11 -0.37 -1.39 16 10 C 0.11 1.03 7.29 -39.48 -0.29 0.74 16 11 F -0.13 -1.23 17.26 2.25 0.04 -1.19 16 12 C -0.13 -0.99 9.80 -39.40 -0.39 -1.37 16 13 C -0.01 -0.11 6.31 -39.56 -0.25 -0.36 16 14 Cl -0.05 -0.34 28.95 -51.86 -1.50 -1.84 16 15 C -0.10 -0.85 7.54 -39.14 -0.30 -1.14 16 16 C 0.11 1.77 6.30 -2.98 -0.02 1.75 16 17 C -0.10 -1.50 2.65 -89.24 -0.24 -1.74 16 18 H 0.09 1.29 7.85 -51.93 -0.41 0.88 16 19 C 0.16 3.12 5.34 -4.04 -0.02 3.10 16 20 N -0.73 -18.16 5.33 -59.90 -0.32 -18.48 16 21 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 25 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.08 0.67 5.57 -51.92 -0.29 0.38 16 34 H 0.15 1.67 7.99 -52.49 -0.42 1.25 16 35 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.15 1.12 5.71 -52.49 -0.30 0.82 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.85 7.52 -51.93 -0.39 1.46 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.38 9.96 7.51 -40.82 -0.31 9.66 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -32.40 367.49 -9.20 -41.60 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.44 Total: 5.09 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.75 Total: -2.33 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.16 Total: -54.68 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.40 -9.20 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716988721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.657 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds