Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47369 * 2 1 4 4 N 1.46506 * 109.47127 * 119.99252 * 2 1 3 5 5 C 1.36932 * 120.00179 * 275.00113 * 4 2 1 6 6 H 1.07996 * 120.00286 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00145 * 179.97438 * 5 4 2 8 8 N 1.31627 * 119.99748 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46849 * 60.00232 * 9 7 5 11 11 H 1.48499 * 109.47277 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46817 * 300.00402 * 9 7 5 13 13 C 1.52999 * 109.47533 * 239.99427 * 2 1 3 14 14 H 1.09001 * 110.88581 * 302.42993 * 13 2 1 15 15 C 1.55157 * 111.00188 * 66.34734 * 13 2 1 16 16 C 1.54337 * 103.01949 * 153.38230 * 15 13 2 17 17 N 1.47023 * 107.26704 * 338.14131 * 16 15 13 18 18 C 1.34772 * 125.64936 * 178.84649 * 17 16 15 19 19 O 1.21574 * 120.00091 * 184.99750 * 18 17 16 20 20 C 1.47690 * 120.00326 * 4.99813 * 18 17 16 21 21 C 1.39675 * 120.15890 * 44.29690 * 20 18 17 22 22 C 1.37851 * 119.90149 * 180.23154 * 21 20 18 23 23 C 1.38456 * 120.23262 * 359.48056 * 22 21 20 24 24 C 1.38303 * 120.32236 * 0.54118 * 23 22 21 25 25 Cl 1.73592 * 119.95162 * 179.72802 * 24 23 22 26 26 C 1.38434 * 120.09261 * 359.71317 * 24 23 22 27 27 F 1.35100 * 120.11481 * 179.97438 * 26 24 23 28 28 C 1.47430 * 108.70140 * 358.58804 * 17 16 15 29 29 H 1.09005 * 109.46693 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46983 * 300.00413 * 1 2 3 31 31 H 1.09003 * 109.46678 * 60.00891 * 1 2 3 32 32 H 0.97002 * 119.99321 * 95.00476 * 4 2 1 33 33 H 0.97002 * 119.99683 * 179.97438 * 8 7 5 34 34 H 1.08992 * 110.72538 * 271.94159 * 15 13 2 35 35 H 1.08997 * 110.71821 * 35.03966 * 15 13 2 36 36 H 1.09002 * 109.99410 * 218.66984 * 16 15 13 37 37 H 1.08998 * 109.77909 * 97.49945 * 16 15 13 38 38 H 1.07998 * 120.05074 * 359.95980 * 21 20 18 39 39 H 1.08003 * 119.88247 * 179.72149 * 22 21 20 40 40 H 1.07993 * 119.83650 * 180.27947 * 23 22 21 41 41 H 1.09004 * 110.36756 * 143.19482 * 28 17 16 42 42 H 1.08997 * 110.36191 * 265.40433 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4243 7 6 2.6113 -0.6616 3.5094 8 7 2.9244 -1.9388 3.4504 9 14 2.7891 0.2702 5.1186 10 1 1.4665 0.8069 5.5284 11 1 3.2981 -0.6481 6.1687 12 1 3.7444 1.3927 4.9377 13 6 2.0401 -0.7214 -1.2491 14 1 1.6548 -1.7400 -1.2942 15 6 1.6776 0.0686 -2.5344 16 6 2.7789 -0.3591 -3.5276 17 7 3.9166 -0.8467 -2.7342 18 6 5.0708 -1.3324 -3.2324 19 8 5.9102 -1.7928 -2.4831 20 6 5.3161 -1.3054 -4.6885 21 6 5.0133 -0.1611 -5.4300 22 6 5.2399 -0.1434 -6.7897 23 6 5.7767 -1.2523 -7.4215 24 6 6.0796 -2.3905 -6.6965 25 17 6.7457 -3.7779 -7.4997 26 6 5.8527 -2.4248 -5.3314 27 9 6.1479 -3.5366 -4.6229 28 6 3.5882 -0.7104 -1.3034 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 2.2491 -1.6316 1.1527 33 1 3.2477 -2.3959 4.2425 34 1 0.6923 -0.2204 -2.8998 35 1 1.7201 1.1423 -2.3520 36 1 3.0871 0.4938 -4.1323 37 1 2.4063 -1.1566 -4.1704 38 1 4.5982 0.7070 -4.9396 39 1 5.0015 0.7400 -7.3634 40 1 5.9558 -1.2298 -8.4862 41 1 3.9936 -1.5505 -0.7394 42 1 3.9765 0.2303 -0.9131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724543403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -64.355259 kcal Electronic energy + Delta-G solvation = -26976.218687 eV Core-core repulsion = 22896.048445 eV Total energy + Delta-G solvation = -4080.170242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.19753 -41.54741 -39.88796 -38.96702 -37.63059 -36.82357 -34.36291 -32.81579 -31.72438 -31.61974 -30.03700 -29.55120 -26.10768 -25.76729 -24.02904 -23.69944 -22.84791 -21.08558 -20.92723 -19.28151 -18.84290 -18.40900 -18.03176 -17.30206 -17.12923 -16.85448 -16.44897 -16.16763 -15.71506 -15.60730 -15.37895 -15.15159 -14.57840 -14.45821 -14.22960 -14.15554 -13.97382 -13.62846 -13.47160 -13.33199 -13.09825 -12.85932 -12.71459 -12.66654 -12.59027 -12.35276 -12.25284 -12.19641 -12.03144 -11.66730 -11.52379 -11.38762 -11.20259 -10.91889 -10.22014 -9.88431 -9.75319 -8.98547 -7.91843 -5.19640 -0.44559 -0.18640 0.81409 1.44291 1.45745 1.48960 1.54738 1.77868 2.34251 2.57000 2.85955 3.15411 3.41853 3.53438 3.64948 3.73513 3.78323 3.87064 4.02931 4.15464 4.29907 4.31517 4.42923 4.55599 4.63912 4.65371 4.69533 4.76230 4.87392 4.88418 4.96957 5.00311 5.09336 5.11709 5.12236 5.22581 5.34036 5.42438 5.52760 5.54273 5.67111 6.29936 6.34708 6.87968 7.35504 8.14125 8.34389 9.31800 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.002502 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.721595 B =11189.594784 C =12013.457505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.052 0.948 4 N -0.740 5.740 5 C -0.230 4.230 6 H 0.079 0.921 7 C -0.082 4.082 8 N -0.974 5.974 9 Si 0.969 3.031 10 H -0.275 1.275 11 H -0.302 1.302 12 H -0.279 1.279 13 C -0.094 4.094 14 H 0.070 0.930 15 C -0.110 4.110 16 C 0.090 3.910 17 N -0.607 5.607 18 C 0.561 3.439 19 O -0.585 6.585 20 C -0.164 4.164 21 C -0.048 4.048 22 C -0.095 4.095 23 C -0.049 4.049 24 C -0.089 4.089 25 Cl -0.050 7.050 26 C 0.120 3.880 27 F -0.140 7.140 28 C 0.124 3.876 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.368 0.632 33 H 0.247 0.753 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.171 0.829 39 H 0.198 0.802 40 H 0.183 0.817 41 H 0.033 0.967 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 7.933 -31.619 32.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.070 0.930 4 N -0.380 5.380 5 C -0.362 4.362 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.798 3.202 10 H -0.201 1.201 11 H -0.228 1.228 12 H -0.205 1.205 13 C -0.114 4.114 14 H 0.089 0.911 15 C -0.148 4.148 16 C -0.030 4.030 17 N -0.339 5.339 18 C 0.350 3.650 19 O -0.465 6.465 20 C -0.168 4.168 21 C -0.067 4.067 22 C -0.113 4.113 23 C -0.068 4.068 24 C -0.117 4.117 25 Cl -0.021 7.021 26 C 0.099 3.901 27 F -0.119 7.119 28 C 0.001 3.999 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.189 0.811 39 H 0.215 0.785 40 H 0.200 0.800 41 H 0.051 0.949 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.220 7.652 -31.178 32.104 hybrid contribution 0.824 -1.278 2.090 2.584 sum 0.604 6.374 -29.088 29.784 Atomic orbital electron populations 1.22274 0.96891 1.00796 1.01281 1.20450 0.93224 0.94885 0.84354 0.92996 1.42696 1.78483 1.10221 1.06560 1.19579 1.34251 0.94168 0.88200 0.90279 1.25552 1.03441 0.96811 1.01569 1.69834 1.52998 1.10410 1.29270 0.85270 0.78016 0.77236 0.79634 1.20087 1.22831 1.20540 1.22502 0.91961 1.00502 0.96457 0.91122 1.22745 0.99210 1.01341 0.91544 1.22634 0.84986 1.00799 0.94612 1.48533 1.15481 1.61396 1.08455 1.18242 0.81066 0.77434 0.88213 1.90839 1.46640 1.47557 1.61489 1.19833 1.07771 0.96640 0.92549 1.21777 0.94638 0.95476 0.94775 1.21697 0.96881 0.99572 0.93145 1.21695 0.93704 0.89077 1.02289 1.21101 1.06934 0.93528 0.90122 1.98400 1.83938 1.41323 1.78425 1.17804 0.99907 0.83400 0.89036 1.91537 1.90703 1.50706 1.78912 1.22045 0.96810 1.00378 0.80641 0.94352 0.94744 0.89692 0.80096 0.94393 0.86887 0.88373 0.87184 0.89894 0.81126 0.78526 0.79950 0.94869 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.34 71.98 0.67 -4.03 16 2 C 0.18 6.38 2.41 44.99 0.11 6.49 16 3 H 0.05 1.83 8.05 -2.38 -0.02 1.81 16 4 N -0.74 -36.73 4.82 -322.93 -1.56 -38.29 16 5 C -0.23 -12.68 9.93 84.03 0.83 -11.85 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 8 N -0.97 -61.98 13.06 21.65 0.28 -61.70 16 9 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C -0.09 -2.76 2.63 -9.40 -0.02 -2.78 16 14 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.11 -1.83 5.59 31.79 0.18 -1.65 16 16 C 0.09 1.45 5.90 86.73 0.51 1.96 16 17 N -0.61 -17.29 3.33 -815.33 -2.71 -20.00 16 18 C 0.56 18.76 7.23 86.74 0.63 19.38 16 19 O -0.58 -26.63 16.68 -3.95 -0.07 -26.70 16 20 C -0.16 -3.87 5.40 -20.06 -0.11 -3.98 16 21 C -0.05 -0.57 8.44 22.53 0.19 -0.38 16 22 C -0.10 -0.49 10.03 22.23 0.22 -0.27 16 23 C -0.05 -0.42 9.82 22.34 0.22 -0.20 16 24 C -0.09 -1.60 6.32 22.33 0.14 -1.46 16 25 Cl -0.05 -0.92 28.61 -2.72 -0.08 -1.00 16 26 C 0.12 3.08 7.22 22.69 0.16 3.24 16 27 F -0.14 -4.76 15.94 44.97 0.72 -4.04 16 28 C 0.12 4.39 6.11 86.85 0.53 4.92 16 29 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.83 7.50 -2.39 -0.02 1.81 16 32 H 0.37 20.39 7.80 -92.71 -0.72 19.66 16 33 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.11 1.30 8.13 -2.39 -0.02 1.28 16 35 H 0.10 1.35 8.01 -2.39 -0.02 1.33 16 36 H 0.11 0.92 5.70 -2.39 -0.01 0.90 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.17 1.15 6.09 -2.91 -0.02 1.13 16 39 H 0.20 -0.79 8.06 -2.91 -0.02 -0.82 16 40 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 41 H 0.03 1.50 7.99 -2.38 -0.02 1.48 16 42 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 Total: -1.00 -84.17 367.28 3.68 -80.48 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.33 Total: 16.92 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.73 Total: 5.05 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -3.98 Total: -119.99 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.07 Total: -26.70 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.72 Total: -4.04 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -84.17 3.68 -80.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724543403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.128 kcal (2) G-P(sol) polarization free energy of solvation -84.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds