Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46868 * 2 1 4 4 N 1.46499 * 109.47350 * 119.99827 * 2 1 3 5 5 C 1.36939 * 119.99865 * 274.99947 * 4 2 1 6 6 H 1.07999 * 120.00063 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99659 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99943 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99622 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47027 * 60.00877 * 9 7 5 11 11 H 1.48500 * 109.46929 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47599 * 300.00388 * 9 7 5 13 13 C 1.52997 * 109.47389 * 240.00434 * 2 1 3 14 14 H 1.09006 * 110.88316 * 299.84742 * 13 2 1 15 15 C 1.55150 * 111.00722 * 175.92431 * 13 2 1 16 16 C 1.54327 * 102.94651 * 206.41919 * 15 13 2 17 17 N 1.47021 * 107.26561 * 22.19234 * 16 15 13 18 18 C 1.34783 * 125.64722 * 181.09760 * 17 16 15 19 19 O 1.21558 * 120.00025 * 184.82086 * 18 17 16 20 20 C 1.47770 * 119.99903 * 4.81408 * 18 17 16 21 21 C 1.39646 * 120.14617 * 312.00521 * 20 18 17 22 22 C 1.37893 * 119.91417 * 179.97438 * 21 20 18 23 23 C 1.38392 * 120.21291 * 359.97438 * 22 21 20 24 24 C 1.38473 * 120.28863 * 0.02562 * 23 22 21 25 25 F 1.35101 * 119.95796 * 180.02562 * 24 23 22 26 26 C 1.38378 * 120.07872 * 359.74687 * 24 23 22 27 27 Cl 1.73606 * 120.10264 * 180.25515 * 26 24 23 28 28 C 1.47426 * 108.70626 * 1.05948 * 17 16 15 29 29 H 1.08995 * 109.46945 * 294.88376 * 1 2 3 30 30 H 1.09000 * 109.46230 * 174.88220 * 1 2 3 31 31 H 1.08998 * 109.47170 * 54.88652 * 1 2 3 32 32 H 0.96994 * 119.99635 * 95.00748 * 4 2 1 33 33 H 0.97003 * 119.99982 * 179.97438 * 8 7 5 34 34 H 1.09001 * 110.72495 * 324.78524 * 15 13 2 35 35 H 1.09006 * 110.72351 * 88.05513 * 15 13 2 36 36 H 1.08992 * 109.88297 * 262.77680 * 16 15 13 37 37 H 1.08999 * 110.00918 * 141.68073 * 16 15 13 38 38 H 1.07998 * 120.03621 * 359.95443 * 21 20 18 39 39 H 1.08004 * 119.89123 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.85599 * 180.02562 * 23 22 21 41 41 H 1.09005 * 110.36726 * 217.03241 * 28 17 16 42 42 H 1.08999 * 110.46037 * 94.75557 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6115 -0.6619 3.5092 8 7 2.9245 -1.9389 3.4501 9 14 2.7892 0.2699 5.1184 10 1 1.4666 0.8065 5.5284 11 1 3.2984 -0.6484 6.1685 12 1 3.7444 1.3924 4.9377 13 6 2.0401 -0.7211 -1.2493 14 1 1.6917 -1.7538 -1.2713 15 6 3.5876 -0.6533 -1.3377 16 6 3.8527 -0.7707 -2.8535 17 7 2.6229 -0.3572 -3.5449 18 6 2.4407 -0.3390 -4.8803 19 8 1.4100 0.1054 -5.3471 20 6 3.4938 -0.8593 -5.7768 21 6 4.8222 -0.4664 -5.6002 22 6 5.8012 -0.9552 -6.4393 23 6 5.4718 -1.8346 -7.4558 24 6 4.1573 -2.2300 -7.6387 25 9 3.8433 -3.0892 -8.6329 26 6 3.1660 -1.7505 -6.8007 27 17 1.5188 -2.2509 -7.0253 28 6 1.6216 0.0334 -2.5358 29 1 -0.3633 0.4324 0.9322 30 1 -0.3632 -1.0236 -0.0917 31 1 -0.3633 0.5911 -0.8406 32 1 2.2492 -1.6316 1.1525 33 1 3.2479 -2.3962 4.2421 34 1 3.9545 0.2989 -0.9547 35 1 4.0415 -1.4866 -0.8012 36 1 4.0925 -1.8028 -3.1091 37 1 4.6766 -0.1171 -3.1397 38 1 5.0823 0.2197 -4.8077 39 1 6.8284 -0.6508 -6.3027 40 1 6.2432 -2.2143 -8.1094 41 1 0.6251 -0.2766 -2.8503 42 1 1.6483 1.1104 -2.3695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724553376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -60.143145 kcal Electronic energy + Delta-G solvation = -26865.078925 eV Core-core repulsion = 22785.091335 eV Total energy + Delta-G solvation = -4079.987591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.10276 -41.60230 -39.85886 -38.79468 -37.67687 -36.79134 -34.29688 -32.73519 -31.76604 -31.45112 -30.76413 -28.80707 -26.50701 -25.55946 -23.90478 -23.80923 -22.75460 -21.11061 -20.94677 -19.23185 -18.88597 -18.00761 -17.86382 -17.49498 -17.19481 -16.88598 -16.40934 -16.31116 -15.67982 -15.40784 -15.34121 -14.94334 -14.67260 -14.45761 -14.13179 -14.03604 -13.99572 -13.79708 -13.49661 -13.18863 -13.10707 -12.90574 -12.79525 -12.73157 -12.62971 -12.29728 -12.20628 -12.17845 -11.96233 -11.60894 -11.53426 -11.38067 -11.10804 -10.88253 -10.18643 -9.87558 -9.72100 -8.95268 -7.88512 -5.15374 -0.42872 -0.16662 0.85223 1.43080 1.51119 1.52591 1.58353 1.78833 2.35316 2.60299 2.91177 3.23496 3.44934 3.54669 3.66281 3.68577 3.76659 3.87253 4.04936 4.20879 4.28740 4.31780 4.38599 4.52119 4.57772 4.62627 4.68213 4.72349 4.83061 4.89694 4.97994 5.00516 5.06309 5.12406 5.14351 5.23154 5.34352 5.40082 5.55608 5.57456 5.62217 6.33001 6.36012 6.91411 7.40774 8.16737 8.40339 9.34603 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002445 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.949602 B =11447.949472 C =12053.788788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 H 0.051 0.949 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.074 0.926 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.284 1.284 11 H -0.299 1.299 12 H -0.277 1.277 13 C -0.095 4.095 14 H 0.072 0.928 15 C -0.111 4.111 16 C 0.099 3.901 17 N -0.606 5.606 18 C 0.569 3.431 19 O -0.559 6.559 20 C -0.107 4.107 21 C -0.084 4.084 22 C -0.069 4.069 23 C -0.110 4.110 24 C 0.089 3.911 25 F -0.133 7.133 26 C -0.059 4.059 27 Cl -0.055 7.055 28 C 0.122 3.878 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.373 0.627 33 H 0.249 0.751 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.167 0.833 39 H 0.192 0.808 40 H 0.182 0.818 41 H 0.068 0.932 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.528 1.773 -23.595 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.075 3.925 3 H 0.069 0.931 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.092 0.908 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.210 1.210 11 H -0.226 1.226 12 H -0.203 1.203 13 C -0.115 4.115 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.022 4.022 17 N -0.339 5.339 18 C 0.357 3.643 19 O -0.438 6.438 20 C -0.110 4.110 21 C -0.102 4.102 22 C -0.087 4.087 23 C -0.128 4.128 24 C 0.068 3.932 25 F -0.112 7.112 26 C -0.088 4.088 27 Cl -0.026 7.026 28 C -0.001 4.001 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.185 0.815 39 H 0.209 0.791 40 H 0.200 0.800 41 H 0.087 0.913 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.805 2.081 -23.848 25.507 hybrid contribution -0.775 -0.484 1.014 1.365 sum 8.031 1.596 -22.834 24.258 Atomic orbital electron populations 1.22384 0.98459 1.00710 1.00579 1.20287 0.92161 0.95051 0.84997 0.93101 1.42506 1.78300 1.10281 1.05925 1.19517 1.34447 0.94062 0.88288 0.90843 1.25417 1.03341 0.96761 1.01002 1.69789 1.52814 1.10039 1.29268 0.85341 0.77743 0.77438 0.80021 1.21034 1.22574 1.20314 1.22461 0.96547 0.99434 0.93017 0.90934 1.22508 0.94836 1.03626 0.93965 1.22453 0.86501 1.01496 0.91795 1.48463 1.16737 1.64488 1.04180 1.17981 0.86392 0.78745 0.81159 1.90813 1.29670 1.47657 1.75621 1.19582 0.95616 0.99569 0.96279 1.21825 0.89051 0.99031 1.00340 1.21597 1.01852 0.93671 0.91565 1.21790 0.93074 0.97892 1.00076 1.17560 0.93621 0.93817 0.88157 1.91539 1.93764 1.67422 1.58436 1.21181 0.86808 1.01716 0.99046 1.98413 1.17832 1.89885 1.96471 1.22194 0.92056 0.99636 0.86210 0.94496 0.94082 0.91600 0.79499 0.94234 0.90357 0.90441 0.90280 0.87920 0.81524 0.79065 0.80047 0.91314 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.52 9.23 71.98 0.66 -4.86 16 2 C 0.18 6.56 2.40 44.99 0.11 6.67 16 3 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 4 N -0.73 -33.94 4.89 -322.94 -1.58 -35.52 16 5 C -0.23 -12.11 9.93 84.03 0.83 -11.27 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 7 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 8 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 9 Si 0.96 44.71 29.55 68.60 2.03 46.74 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 C -0.09 -2.75 2.63 -9.41 -0.02 -2.77 16 14 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 15 C -0.11 -2.81 6.19 31.78 0.20 -2.61 16 16 C 0.10 1.87 5.66 86.73 0.49 2.36 16 17 N -0.61 -14.71 3.33 -815.28 -2.71 -17.43 16 18 C 0.57 15.40 6.92 86.76 0.60 16.00 16 19 O -0.56 -19.33 16.09 -3.90 -0.06 -19.40 16 20 C -0.11 -2.24 5.41 -20.08 -0.11 -2.35 16 21 C -0.08 -1.00 8.52 22.53 0.19 -0.81 16 22 C -0.07 -0.44 10.03 22.22 0.22 -0.22 16 23 C -0.11 -1.02 10.02 22.36 0.22 -0.80 16 24 C 0.09 1.58 7.27 22.36 0.16 1.74 16 25 F -0.13 -2.68 16.83 44.97 0.76 -1.92 16 26 C -0.06 -1.35 6.34 22.64 0.14 -1.20 16 27 Cl -0.06 -1.51 26.80 -2.72 -0.07 -1.58 16 28 C 0.12 3.23 5.49 86.85 0.48 3.70 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.87 7.59 -2.39 -0.02 1.85 16 32 H 0.37 18.78 7.80 -92.71 -0.72 18.05 16 33 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.08 2.03 8.04 -2.39 -0.02 2.01 16 35 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.28 6.01 -2.39 -0.01 1.26 16 38 H 0.17 1.29 5.99 -2.91 -0.02 1.27 16 39 H 0.19 -0.35 8.06 -2.91 -0.02 -0.38 16 40 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 41 H 0.07 1.97 8.09 -2.38 -0.02 1.95 16 42 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -70.48 366.01 3.63 -66.86 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.33 Total: 18.94 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.65 Total: 0.03 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.01 Total: -109.67 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.06 Total: -19.40 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.76 Total: -1.92 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal Total: -70.48 3.63 -66.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724553376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.713 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds