Wall clock time and date at job start Sat Apr 11 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47010 * 2 1 4 4 N 1.46497 * 109.47273 * 240.00483 * 2 1 3 5 5 C 1.36935 * 120.00182 * 84.99975 * 4 2 1 6 6 H 1.07995 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99884 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00199 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46953 * 59.99688 * 9 7 5 11 11 H 1.48503 * 109.47351 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47063 * 299.99708 * 9 7 5 13 13 C 1.53001 * 109.47311 * 120.00324 * 2 1 3 14 14 H 1.08995 * 110.88910 * 60.04165 * 13 2 1 15 15 C 1.55153 * 111.00615 * 183.96703 * 13 2 1 16 16 C 1.54324 * 102.94387 * 153.57297 * 15 13 2 17 17 N 1.47297 * 107.30681 * 337.81930 * 16 15 13 18 18 C 1.34766 * 125.79488 * 178.92381 * 17 16 15 19 19 O 1.21561 * 120.00220 * 185.23261 * 18 17 16 20 20 C 1.47779 * 119.99998 * 5.23332 * 18 17 16 21 21 C 1.39633 * 120.14140 * 44.97890 * 20 18 17 22 22 C 1.37905 * 119.91149 * 179.69741 * 21 20 18 23 23 C 1.38395 * 120.20780 * 0.57826 * 22 21 20 24 24 C 1.38468 * 120.29167 * 359.72137 * 23 22 21 25 25 F 1.35097 * 119.95765 * 180.02562 * 24 23 22 26 26 C 1.38379 * 120.07818 * 359.97438 * 24 23 22 27 27 Cl 1.73607 * 120.10030 * 180.02562 * 26 24 23 28 28 C 1.47422 * 108.55340 * 358.92094 * 17 16 15 29 29 H 1.08995 * 109.47400 * 305.09619 * 1 2 3 30 30 H 1.08997 * 109.47510 * 65.10084 * 1 2 3 31 31 H 1.09004 * 109.46900 * 185.09764 * 1 2 3 32 32 H 0.97001 * 120.00026 * 264.99956 * 4 2 1 33 33 H 0.97003 * 120.00110 * 179.97438 * 8 7 5 34 34 H 1.08993 * 110.71987 * 271.94104 * 15 13 2 35 35 H 1.08998 * 110.71926 * 35.03545 * 15 13 2 36 36 H 1.09001 * 109.87958 * 97.22011 * 16 15 13 37 37 H 1.09000 * 109.88264 * 218.39200 * 16 15 13 38 38 H 1.07996 * 120.04545 * 359.97214 * 21 20 18 39 39 H 1.08000 * 119.89964 * 180.29307 * 22 21 20 40 40 H 1.08000 * 119.85303 * 179.73719 * 23 22 21 41 41 H 1.08996 * 110.37047 * 265.26292 * 28 17 16 42 42 H 1.09010 * 110.36580 * 143.05003 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9244 -1.9388 -3.4502 9 14 2.7891 0.2700 -5.1185 10 1 3.7445 1.3925 -4.9376 11 1 3.2983 -0.6484 -6.1686 12 1 1.4666 0.8067 -5.5284 13 6 2.0400 -0.7213 1.2492 14 1 1.6901 -1.7533 1.2721 15 6 3.5877 -0.6559 1.3362 16 6 3.8539 -0.7727 2.8519 17 7 2.6234 -0.3565 3.5463 18 6 2.4402 -0.3361 4.8813 19 8 1.3483 -0.0635 5.3408 20 6 3.5666 -0.6450 5.7865 21 6 4.8244 -0.0834 5.5577 22 6 5.8707 -0.3700 6.4091 23 6 5.6812 -1.2222 7.4830 24 6 4.4391 -1.7888 7.7143 25 9 4.2615 -2.6193 8.7649 26 6 3.3793 -1.5044 6.8712 27 17 1.8215 -2.2140 7.1610 28 6 1.6239 0.0348 2.5357 29 1 -0.3634 0.5908 0.8408 30 1 -0.3634 0.4326 -0.9321 31 1 -0.3633 -1.0236 0.0913 32 1 2.2490 -1.6317 -1.1527 33 1 3.2471 -2.3963 -4.2425 34 1 4.0397 -1.4901 0.7998 35 1 3.9559 0.2943 0.9495 36 1 4.0923 -1.8051 3.1078 37 1 4.6785 -0.1184 3.1349 38 1 4.9765 0.5781 4.7177 39 1 6.8422 0.0683 6.2347 40 1 6.5057 -1.4460 8.1437 41 1 1.6540 1.1115 2.3693 42 1 0.6263 -0.2721 2.8501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724553379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:19 Heat of formation + Delta-G solvation = -41.605204 kcal Electronic energy + Delta-G solvation = -26847.580760 eV Core-core repulsion = 22768.397035 eV Total energy + Delta-G solvation = -4079.183725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.37876 -40.64685 -38.97476 -37.67073 -36.80500 -35.26465 -32.65607 -31.72199 -31.01627 -30.39643 -29.24415 -27.49216 -25.32955 -24.01894 -23.24131 -22.73483 -21.48571 -20.06315 -19.68533 -18.17824 -17.27910 -17.20237 -17.02173 -16.59155 -16.17597 -16.00401 -15.24255 -14.95939 -14.73871 -14.29758 -13.99081 -13.70051 -13.47900 -13.36545 -13.14405 -13.00428 -12.75487 -12.45719 -12.33312 -12.21923 -12.06598 -11.89112 -11.73465 -11.29254 -11.23011 -10.90357 -10.74254 -10.62381 -10.41510 -10.26763 -10.09605 -9.88993 -9.66781 -9.49091 -9.17955 -8.94203 -8.69006 -6.99968 -5.80002 -3.08587 0.24033 0.47365 1.66807 2.38480 2.69843 3.07808 3.41135 3.46366 3.46777 3.61973 4.02348 4.25184 4.34588 4.53638 4.59093 4.73396 4.76250 4.92329 5.05705 5.23125 5.26062 5.33349 5.43141 5.50567 5.51431 5.62399 5.68636 5.84632 5.86416 5.92558 6.01865 6.08570 6.16627 6.17682 6.33848 6.41529 6.54509 6.61657 6.84090 7.07479 7.36483 7.66668 7.94540 8.38501 9.49951 10.06870 10.41813 11.42491 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002424 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.716680 B =11546.458671 C =12162.802040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.093 3.907 17 N -0.608 5.608 18 C 0.570 3.430 19 O -0.516 6.516 20 C -0.086 4.086 21 C -0.088 4.088 22 C -0.090 4.090 23 C -0.125 4.125 24 C 0.104 3.896 25 F -0.124 7.124 26 C -0.035 4.035 27 Cl -0.023 7.023 28 C 0.114 3.886 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.072 0.928 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 1.892 22.523 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.076 3.924 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.030 4.030 17 N -0.341 5.341 18 C 0.357 3.643 19 O -0.393 6.393 20 C -0.090 4.090 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.144 4.144 24 C 0.083 3.917 25 F -0.102 7.102 26 C -0.064 4.064 27 Cl 0.006 6.994 28 C -0.008 4.008 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.090 0.910 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.402 2.056 22.760 23.732 hybrid contribution 0.063 -0.152 -0.736 0.754 sum 6.465 1.905 22.024 23.032 Atomic orbital electron populations 1.22499 0.99227 1.00681 1.00468 1.20122 0.91812 0.95122 0.85391 0.93255 1.42359 1.78175 1.10663 1.05113 1.19163 1.36532 0.93824 0.87310 0.91285 1.24714 1.02224 0.95938 0.97968 1.69644 1.50905 1.08626 1.28970 0.86303 0.77775 0.78599 0.83703 1.21314 1.21757 1.21329 1.22681 0.95157 1.00354 0.94024 0.90004 1.22582 0.96468 1.04318 0.91983 1.22421 0.86593 0.99916 0.94057 1.48489 1.16492 1.64816 1.04338 1.17547 0.87339 0.78459 0.80929 1.90845 1.24858 1.48207 1.75342 1.19706 0.95226 0.98636 0.95460 1.21511 0.90436 0.98979 0.99790 1.21097 0.99808 0.96646 0.93229 1.21328 0.95465 0.97945 0.99648 1.17262 0.93456 0.94155 0.86783 1.91563 1.95878 1.68892 1.53872 1.21003 0.88667 0.99861 0.96890 1.98436 1.24082 1.81561 1.95326 1.22366 0.92364 0.99405 0.86637 0.94369 0.92536 0.93561 0.78287 0.93486 0.89320 0.90047 0.91358 0.91275 0.83447 0.83494 0.83307 0.90952 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.23 37.15 0.34 -2.56 16 2 C 0.19 3.35 2.40 -67.93 -0.16 3.19 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -16.68 4.88 -53.43 -0.26 -16.94 16 5 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 9 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C -0.10 -1.51 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.53 6.19 -24.90 -0.15 -1.69 16 16 C 0.09 1.00 5.94 -2.91 -0.02 0.98 16 17 N -0.61 -7.76 3.33 -171.43 -0.57 -8.34 16 18 C 0.57 7.90 6.99 -12.36 -0.09 7.81 16 19 O -0.52 -8.78 15.85 5.31 0.08 -8.69 16 20 C -0.09 -0.97 5.38 -104.95 -0.57 -1.54 16 21 C -0.09 -0.70 8.44 -39.18 -0.33 -1.03 16 22 C -0.09 -0.53 10.03 -39.65 -0.40 -0.92 16 23 C -0.12 -0.84 10.02 -39.44 -0.40 -1.23 16 24 C 0.10 1.01 7.27 -39.44 -0.29 0.72 16 25 F -0.12 -1.28 16.83 2.25 0.04 -1.25 16 26 C -0.04 -0.41 6.34 -39.00 -0.25 -0.66 16 27 Cl -0.02 -0.31 26.68 -51.86 -1.38 -1.69 16 28 C 0.11 1.55 5.53 -2.53 -0.01 1.54 16 29 H 0.04 0.56 7.59 -51.93 -0.39 0.16 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.38 9.48 7.80 -40.82 -0.32 9.17 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.58 5.77 -51.93 -0.30 0.28 16 38 H 0.15 0.95 6.18 -52.49 -0.32 0.63 16 39 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 42 H 0.08 1.15 7.99 -51.92 -0.41 0.73 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -31.16 365.77 -9.18 -40.35 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.51 Total: 4.68 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.79 Total: -3.95 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.11 Total: -51.63 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.38 Total: -1.69 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.16 -9.18 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724553379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.258 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds