Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09015 * 109.99527 * 2 1 4 4 C 1.54332 * 109.78027 * 121.16236 * 2 1 3 5 5 C 1.55162 * 103.01758 * 97.49962 * 4 2 1 6 6 H 1.08995 * 111.00131 * 277.23273 * 5 4 2 7 7 N 1.46897 * 111.00342 * 153.38062 * 5 4 2 8 8 C 1.46899 * 110.99828 * 161.35006 * 7 5 4 9 9 C 1.50709 * 109.46887 * 179.97438 * 8 7 5 10 10 C 1.38425 * 122.54029 * 269.73618 * 9 8 7 11 11 C 1.33383 * 114.92120 * 179.76356 * 10 9 8 12 12 S 1.75891 * 109.59296 * 0.47866 * 11 10 9 13 13 C 1.33386 * 122.53461 * 90.02664 * 9 8 7 14 14 C 1.54919 * 101.57945 * 35.30770 * 5 4 2 15 15 N 1.47021 * 109.88623 * 238.90837 * 2 1 3 16 16 C 1.34776 * 125.64521 * 59.55394 * 15 2 1 17 17 O 1.21280 * 120.00458 * 359.72037 * 16 15 2 18 18 C 1.50702 * 119.99564 * 179.72273 * 16 15 2 19 19 S 1.81008 * 109.46925 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99767 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00286 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99642 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00322 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 239.99700 * 24 22 20 27 27 H 1.48500 * 109.47454 * 119.99693 * 24 22 20 28 28 H 1.08998 * 109.46923 * 179.64357 * 1 2 3 29 29 H 1.08999 * 109.47127 * 299.64059 * 1 2 3 30 30 H 1.09004 * 109.47446 * 59.63986 * 1 2 3 31 31 H 1.08993 * 110.85055 * 339.03217 * 4 2 1 32 32 H 1.09000 * 110.51653 * 215.81110 * 4 2 1 33 33 H 1.00909 * 110.99921 * 285.30613 * 7 5 4 34 34 H 1.08997 * 109.47389 * 300.00026 * 8 7 5 35 35 H 1.09002 * 109.46959 * 60.00499 * 8 7 5 36 36 H 1.08003 * 122.53705 * 359.97438 * 10 9 8 37 37 H 1.08003 * 125.20838 * 180.20939 * 11 10 9 38 38 H 1.07994 * 125.20977 * 0.02562 * 13 9 8 39 39 H 1.09004 * 110.36173 * 204.15026 * 14 5 4 40 40 H 1.09000 * 110.36389 * 81.82988 * 14 5 4 41 41 H 1.08998 * 109.47573 * 60.00437 * 18 16 15 42 42 H 1.09000 * 109.46955 * 299.99406 * 18 16 15 43 43 H 0.97004 * 120.00251 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0523 -0.7515 1.2427 5 6 2.3562 -2.1697 0.6914 6 1 1.4523 -2.7777 0.6579 7 7 3.4029 -2.8292 1.4834 8 6 3.3887 -4.2823 1.2683 9 6 4.4741 -4.9230 2.0946 10 6 5.7572 -5.1205 1.6143 11 6 6.5974 -5.6961 2.4756 12 16 5.7565 -6.0347 3.9829 13 6 4.2693 -5.3479 3.3423 14 6 2.8614 -1.8464 -0.7370 15 7 2.0301 -0.7140 -1.1839 16 6 1.7753 -0.3843 -2.4657 17 8 1.0746 0.5729 -2.7179 18 6 2.3613 -1.2052 -3.5855 19 16 1.8410 -0.5147 -5.1758 20 6 2.6456 -1.6341 -6.2732 21 1 3.2401 -2.4444 -5.8778 22 6 2.5153 -1.4744 -7.6458 23 7 1.7903 -0.4872 -8.1277 24 14 3.3677 -2.6615 -8.8092 25 1 4.1147 -3.6755 -8.0223 26 1 4.3135 -1.9126 -9.6753 27 1 2.3532 -3.3400 -9.6551 28 1 -0.3633 -1.0276 -0.0064 29 1 -0.3633 0.5082 0.8932 30 1 -0.3634 0.5194 -0.8868 31 1 1.2886 -0.7951 2.0191 32 1 2.9606 -0.2814 1.6197 33 1 4.3113 -2.4418 1.2762 34 1 2.4201 -4.6842 1.5655 35 1 3.5623 -4.4952 0.2134 36 1 6.0563 -4.8274 0.6188 37 1 7.6342 -5.9237 2.2764 38 1 3.3336 -5.2810 3.8773 39 1 2.7179 -2.7047 -1.3934 40 1 3.9124 -1.5586 -0.7115 41 1 2.0109 -2.2340 -3.5037 42 1 3.4491 -1.1854 -3.5197 43 1 1.3474 0.1291 -7.5236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725577288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -2.934835 kcal Electronic energy + Delta-G solvation = -24136.059196 eV Core-core repulsion = 20626.809227 eV Total energy + Delta-G solvation = -3509.249970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28470 -38.86012 -37.60624 -34.98862 -32.55241 -32.26779 -30.88342 -29.16046 -28.80686 -26.06025 -25.80695 -24.86947 -23.10391 -22.48665 -20.96739 -19.19041 -19.02229 -18.24256 -17.93634 -16.91760 -16.63044 -16.05709 -15.41912 -15.02833 -14.69210 -14.35285 -14.12526 -13.93448 -13.87229 -13.42496 -13.36817 -13.25111 -13.12145 -12.90532 -12.65902 -12.47994 -12.39395 -12.25864 -12.04549 -11.88443 -11.75018 -11.59468 -11.20408 -11.02660 -10.92297 -10.76173 -10.23031 -9.61348 -9.50882 -9.16860 -9.03461 -8.94945 -8.71640 -8.56902 -8.24377 -6.69775 -6.64646 -4.02643 0.65891 1.31083 1.63223 2.27904 2.75773 2.94575 3.30186 3.38437 3.40109 3.52149 3.85773 4.20812 4.26924 4.36298 4.56107 4.62287 4.71739 4.87801 4.94562 4.95777 5.05082 5.07046 5.19949 5.23663 5.27001 5.30613 5.38699 5.43747 5.50299 5.59420 5.66212 5.69584 5.73324 5.76318 5.96793 6.02141 6.02802 6.09859 6.24144 6.47839 6.57142 6.91871 7.57832 7.90252 8.45365 8.47905 9.24682 10.79422 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.002471 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.439120 B =11330.243718 C =13698.081654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.114 4.114 5 C 0.077 3.923 6 H 0.097 0.903 7 N -0.669 5.669 8 C 0.115 3.885 9 C -0.104 4.104 10 C -0.130 4.130 11 C -0.212 4.212 12 S 0.089 5.911 13 C -0.187 4.187 14 C 0.072 3.928 15 N -0.618 5.618 16 C 0.548 3.452 17 O -0.512 6.512 18 C -0.124 4.124 19 S -0.116 6.116 20 C -0.607 4.607 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.885 5.885 24 Si 1.090 2.910 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.346 0.654 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.529 -10.157 26.922 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.034 4.034 6 H 0.115 0.885 7 N -0.299 5.299 8 C -0.016 4.016 9 C -0.117 4.117 10 C -0.160 4.160 11 C -0.347 4.347 12 S 0.352 5.648 13 C -0.324 4.324 14 C -0.054 4.054 15 N -0.356 5.356 16 C 0.336 3.664 17 O -0.386 6.386 18 C -0.275 4.275 19 S 0.110 5.890 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.176 4.176 23 N -0.519 5.519 24 Si 0.916 3.084 25 H -0.214 1.214 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.157 0.843 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.744 -9.746 26.826 29.114 hybrid contribution 0.849 -0.431 -0.341 1.011 sum 6.593 -10.177 26.485 29.129 Atomic orbital electron populations 1.22154 0.94681 1.02249 1.03061 1.21548 0.94908 0.96382 0.84055 0.90735 1.22699 1.02134 0.93987 0.96418 1.22799 0.95453 0.95751 0.89413 0.88516 1.60611 1.08497 1.02982 1.57803 1.20643 0.96843 0.87419 0.96697 1.18804 0.95449 1.02477 0.94959 1.20146 0.92756 1.01886 1.01234 1.25585 1.03972 1.08135 0.97046 1.84338 1.03122 1.60614 1.16717 1.25501 1.01954 1.06148 0.98767 1.23073 0.95223 0.90055 0.97040 1.48449 1.51556 1.30683 1.04897 1.19970 0.80226 0.84709 0.81500 1.90693 1.37226 1.28183 1.82538 1.23294 1.03631 1.02297 0.98296 1.84826 1.67952 1.42337 0.93842 1.23742 1.39181 1.17498 0.95048 0.91615 1.26061 0.96249 0.99285 0.95961 1.70736 1.27924 1.14226 1.38994 0.83248 0.75862 0.74494 0.74760 1.21425 1.20858 1.20850 0.92668 0.91907 0.90769 0.89522 0.90250 0.83481 0.89873 0.93606 0.84262 0.81892 0.81765 0.90569 0.91457 0.89254 0.89256 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.05 37.16 0.34 -1.62 16 2 C 0.13 1.59 3.51 -66.95 -0.23 1.35 16 3 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 4 C -0.11 -0.95 6.18 -24.89 -0.15 -1.11 16 5 C 0.08 0.63 3.32 -65.56 -0.22 0.41 16 6 H 0.10 0.81 7.92 -51.93 -0.41 0.40 16 7 N -0.67 -4.83 6.36 -105.72 -0.67 -5.51 16 8 C 0.11 0.81 5.81 -4.97 -0.03 0.78 16 9 C -0.10 -0.78 5.31 -106.24 -0.56 -1.35 16 10 C -0.13 -0.96 9.98 -41.21 -0.41 -1.37 16 11 C -0.21 -1.47 11.23 29.04 0.33 -1.14 16 12 S 0.09 0.60 23.34 -107.50 -2.51 -1.90 16 13 C -0.19 -1.35 10.98 29.04 0.32 -1.03 16 14 C 0.07 0.75 6.27 -2.53 -0.02 0.74 16 15 N -0.62 -8.74 3.08 -163.01 -0.50 -9.25 16 16 C 0.55 10.50 7.65 -10.98 -0.08 10.42 16 17 O -0.51 -11.68 14.75 5.56 0.08 -11.59 16 18 C -0.12 -2.57 5.16 36.01 0.19 -2.38 16 19 S -0.12 -3.15 19.60 -107.50 -2.11 -5.25 16 20 C -0.61 -17.52 9.50 30.94 0.29 -17.22 16 21 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 22 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 23 N -0.88 -27.58 13.67 55.49 0.76 -26.82 16 24 Si 1.09 25.05 29.92 -169.99 -5.09 19.96 16 25 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.14 6.74 -51.93 -0.35 0.79 16 31 H 0.09 0.64 7.83 -51.93 -0.41 0.24 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.35 2.43 8.30 -39.29 -0.33 2.10 16 34 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.05 0.33 8.13 -51.93 -0.42 -0.10 16 36 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 40 H 0.07 0.65 7.80 -51.93 -0.41 0.25 16 41 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 42 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.28 8.88 7.13 -40.82 -0.29 8.59 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -34.37 381.40 -11.05 -45.42 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.41 Total: 1.79 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.35 Total: -12.59 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: -0.42 Total: -41.58 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.96 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -4.62 Total: -7.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.37 -11.05 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725577288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.484 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds