Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.87269 * 2 1 4 4 C 1.54323 * 109.87851 * 121.17394 * 2 1 3 5 5 C 1.55166 * 102.94277 * 141.61440 * 4 2 1 6 6 H 1.09002 * 111.03621 * 82.58090 * 5 4 2 7 7 N 1.46897 * 111.00545 * 206.42236 * 5 4 2 8 8 C 1.46897 * 110.99772 * 198.64419 * 7 5 4 9 9 C 1.50706 * 109.46900 * 179.97438 * 8 7 5 10 10 C 1.38422 * 122.53463 * 90.00563 * 9 8 7 11 11 C 1.33391 * 114.92090 * 179.97438 * 10 9 8 12 12 S 1.75886 * 109.59181 * 359.97438 * 11 10 9 13 13 C 1.33387 * 122.54141 * 269.71278 * 9 8 7 14 14 C 1.54917 * 101.57617 * 324.49659 * 5 4 2 15 15 N 1.47020 * 109.88227 * 238.98096 * 2 1 3 16 16 C 1.34775 * 125.64731 * 61.68257 * 15 2 1 17 17 O 1.21277 * 119.99899 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99877 * 179.97438 * 16 15 2 19 19 S 1.81008 * 109.47084 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99745 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00359 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99870 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99992 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47298 * 89.99361 * 24 22 20 26 26 H 1.48500 * 109.47236 * 209.99417 * 24 22 20 27 27 H 1.48496 * 109.46967 * 329.99561 * 24 22 20 28 28 H 1.09009 * 109.47271 * 179.56378 * 1 2 3 29 29 H 1.09001 * 109.47499 * 299.56324 * 1 2 3 30 30 H 1.08999 * 109.47405 * 59.56714 * 1 2 3 31 31 H 1.08996 * 110.72643 * 23.24862 * 4 2 1 32 32 H 1.09006 * 110.72398 * 259.97381 * 4 2 1 33 33 H 1.00901 * 110.99726 * 322.60521 * 7 5 4 34 34 H 1.09000 * 109.46743 * 60.00757 * 8 7 5 35 35 H 1.09000 * 109.47313 * 299.99940 * 8 7 5 36 36 H 1.08002 * 122.54228 * 359.97438 * 10 9 8 37 37 H 1.08001 * 125.20468 * 180.02562 * 11 10 9 38 38 H 1.08002 * 125.20431 * 0.02562 * 13 9 8 39 39 H 1.09003 * 110.36548 * 155.84755 * 14 5 4 40 40 H 1.09002 * 110.36656 * 278.05670 * 14 5 4 41 41 H 1.09002 * 109.47185 * 299.99315 * 18 16 15 42 42 H 1.08994 * 109.47440 * 59.99915 * 18 16 15 43 43 H 0.97006 * 120.00281 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7512 1.2417 5 6 3.2876 -1.5152 0.6904 6 1 4.1658 -0.8702 0.6593 7 7 3.5539 -2.7249 1.4802 8 6 4.9266 -3.2019 1.2657 9 6 5.1624 -4.4409 2.0907 10 6 4.9104 -5.7143 1.6102 11 6 5.1736 -6.7011 2.4683 12 16 5.7752 -6.0261 3.9769 13 6 5.6351 -4.3937 3.3371 14 6 2.8145 -1.8784 -0.7393 15 7 2.0300 -0.7125 -1.1849 16 6 1.8085 -0.3579 -2.4661 17 8 1.1452 0.6259 -2.7171 18 6 2.3852 -1.1839 -3.5869 19 16 1.9147 -0.4566 -5.1763 20 6 2.6996 -1.5885 -6.2750 21 1 3.2601 -2.4232 -5.8808 22 6 2.5966 -1.4080 -7.6474 23 7 3.1833 -2.2533 -8.4682 24 14 1.6265 0.0353 -8.3294 25 1 2.5276 1.2042 -8.4935 26 1 1.0500 -0.3341 -9.6472 27 1 0.5306 0.3833 -7.3897 28 1 -0.3634 -1.0277 -0.0078 29 1 -0.3634 0.5070 0.8939 30 1 -0.3634 0.5205 -0.8860 31 1 1.3050 -1.4482 1.6163 32 1 2.3528 -0.0488 2.0201 33 1 3.3760 -2.5633 2.4601 34 1 5.6316 -2.4266 1.5656 35 1 5.0697 -3.4349 0.2106 36 1 4.5296 -5.8953 0.6159 37 1 5.0388 -7.7536 2.2672 38 1 5.8911 -3.4912 3.8722 39 1 3.6717 -2.0319 -1.3950 40 1 2.1903 -2.7717 -0.7169 41 1 3.4718 -1.2022 -3.5029 42 1 1.9987 -2.2011 -3.5247 43 1 3.1117 -2.1270 -9.4273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725577294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = 3.412434 kcal Electronic energy + Delta-G solvation = -24094.623244 eV Core-core repulsion = 20585.648513 eV Total energy + Delta-G solvation = -3508.974731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19402 -38.83368 -37.55572 -35.01489 -32.43267 -32.21993 -30.92401 -29.19515 -28.75721 -26.08863 -25.95052 -25.59442 -23.01852 -22.01600 -21.08595 -19.19863 -18.91669 -18.02656 -17.62588 -17.04624 -16.45095 -15.81625 -15.31912 -15.08629 -14.97941 -14.84079 -14.29379 -13.98780 -13.63799 -13.46941 -13.36293 -13.15936 -12.99220 -12.93899 -12.78210 -12.52558 -12.38355 -12.22289 -11.90957 -11.88033 -11.39652 -11.24984 -11.13000 -11.05285 -10.99497 -10.84366 -10.58591 -9.84552 -9.45238 -9.18763 -8.99369 -8.90804 -8.71317 -8.53819 -8.48123 -6.90663 -6.27923 -3.99415 0.66521 1.33149 1.65286 2.33212 2.70239 2.97900 3.18967 3.33948 3.51536 3.58947 3.88371 4.16668 4.33900 4.38558 4.52242 4.63382 4.73952 4.75397 4.95045 4.99571 5.07571 5.11154 5.15847 5.20208 5.21632 5.36571 5.41309 5.44370 5.53300 5.59789 5.66224 5.71084 5.76605 5.81957 6.02834 6.04075 6.05374 6.15546 6.23991 6.47760 6.61472 6.93546 7.62841 7.95213 8.42792 8.47875 9.18342 10.81328 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002358 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.464891 B =11873.002200 C =13730.753732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.072 3.928 6 H 0.063 0.937 7 N -0.671 5.671 8 C 0.115 3.885 9 C -0.094 4.094 10 C -0.115 4.115 11 C -0.213 4.213 12 S 0.087 5.913 13 C -0.210 4.210 14 C 0.111 3.889 15 N -0.621 5.621 16 C 0.549 3.451 17 O -0.517 6.517 18 C -0.117 4.117 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.346 0.654 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -4.818 28.621 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.165 4.165 5 C -0.039 4.039 6 H 0.081 0.919 7 N -0.303 5.303 8 C -0.016 4.016 9 C -0.107 4.107 10 C -0.146 4.146 11 C -0.348 4.348 12 S 0.351 5.649 13 C -0.347 4.347 14 C -0.013 4.013 15 N -0.358 5.358 16 C 0.337 3.663 17 O -0.391 6.391 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.162 0.838 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.222 -4.451 28.883 29.401 hybrid contribution 0.631 0.402 -1.041 1.282 sum 3.852 -4.049 27.842 28.398 Atomic orbital electron populations 1.22141 0.94625 1.02413 1.02901 1.21423 0.94903 0.96175 0.83939 0.90801 1.22887 0.97482 0.99243 0.96903 1.22677 0.97267 0.90042 0.93895 0.91908 1.60339 1.24600 1.32113 1.13247 1.20679 0.88816 0.92351 0.99740 1.18831 1.01776 0.95720 0.94411 1.20129 1.01841 0.91088 1.01497 1.25624 1.08768 1.03481 0.96933 1.84295 1.64936 0.98911 1.16776 1.25490 1.09442 1.00559 0.99200 1.22250 0.95728 0.89242 0.94055 1.48497 1.53717 1.28793 1.04811 1.19942 0.79868 0.84973 0.81510 1.90687 1.38813 1.26963 1.82635 1.23263 1.03939 1.02519 0.97069 1.84774 1.70878 1.40335 0.95648 1.22306 1.37759 1.13860 0.92812 0.89404 1.24710 0.94561 0.96231 0.95814 1.69937 1.42260 1.36040 1.03500 0.86736 0.82270 0.82779 0.80084 1.19223 1.19952 1.15906 0.92422 0.92045 0.90849 0.89321 0.90265 0.83479 0.94016 0.89448 0.83823 0.81836 0.82144 0.90639 0.90191 0.88734 0.88558 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.10 37.16 0.34 -1.56 16 2 C 0.14 1.59 3.46 -66.96 -0.23 1.36 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -0.98 5.95 -24.89 -0.15 -1.13 16 5 C 0.07 0.58 3.32 -65.56 -0.22 0.37 16 6 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 7 N -0.67 -4.81 6.36 -105.72 -0.67 -5.48 16 8 C 0.12 0.82 5.81 -4.97 -0.03 0.79 16 9 C -0.09 -0.72 5.31 -106.25 -0.56 -1.28 16 10 C -0.12 -0.92 9.98 -41.21 -0.41 -1.34 16 11 C -0.21 -1.55 11.23 29.04 0.33 -1.23 16 12 S 0.09 0.60 23.34 -107.50 -2.51 -1.91 16 13 C -0.21 -1.44 10.98 29.04 0.32 -1.12 16 14 C 0.11 1.22 6.34 -2.53 -0.02 1.20 16 15 N -0.62 -8.64 3.06 -163.02 -0.50 -9.14 16 16 C 0.55 10.18 7.66 -10.99 -0.08 10.09 16 17 O -0.52 -11.32 14.90 5.56 0.08 -11.24 16 18 C -0.12 -2.35 5.16 36.01 0.19 -2.16 16 19 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 20 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 24 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.09 6.88 -51.93 -0.36 0.73 16 31 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.35 2.10 8.52 -39.29 -0.33 1.77 16 34 H 0.04 0.27 8.07 -51.93 -0.42 -0.15 16 35 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.77 7.85 -51.92 -0.41 1.36 16 42 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -33.55 380.77 -10.64 -44.19 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.53 Total: 0.24 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.32 Total: -8.04 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.40 Total: -40.53 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -4.50 Total: -7.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.55 -10.64 -44.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725577294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.606 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds