Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.87269 * 2 1 4 4 C 1.54323 * 109.87851 * 121.17394 * 2 1 3 5 5 C 1.55166 * 102.94277 * 141.61440 * 4 2 1 6 6 H 1.09002 * 111.03621 * 82.58090 * 5 4 2 7 7 N 1.46897 * 111.00545 * 206.42236 * 5 4 2 8 8 C 1.46897 * 110.99772 * 198.64419 * 7 5 4 9 9 C 1.50706 * 109.46900 * 179.97438 * 8 7 5 10 10 C 1.38422 * 122.53463 * 90.00563 * 9 8 7 11 11 C 1.33391 * 114.92090 * 179.97438 * 10 9 8 12 12 S 1.75886 * 109.59181 * 359.97438 * 11 10 9 13 13 C 1.33387 * 122.54141 * 269.71278 * 9 8 7 14 14 C 1.54917 * 101.57617 * 324.49659 * 5 4 2 15 15 N 1.47020 * 109.88227 * 238.98096 * 2 1 3 16 16 C 1.34775 * 125.64731 * 61.68257 * 15 2 1 17 17 O 1.21277 * 119.99899 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99877 * 179.97438 * 16 15 2 19 19 S 1.81008 * 109.47084 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99745 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00359 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99870 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99992 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47298 * 89.99361 * 24 22 20 26 26 H 1.48500 * 109.47236 * 209.99417 * 24 22 20 27 27 H 1.48496 * 109.46967 * 329.99561 * 24 22 20 28 28 H 1.09009 * 109.47271 * 179.56378 * 1 2 3 29 29 H 1.09001 * 109.47499 * 299.56324 * 1 2 3 30 30 H 1.08999 * 109.47405 * 59.56714 * 1 2 3 31 31 H 1.08996 * 110.72643 * 23.24862 * 4 2 1 32 32 H 1.09006 * 110.72398 * 259.97381 * 4 2 1 33 33 H 1.00901 * 110.99726 * 322.60521 * 7 5 4 34 34 H 1.09000 * 109.46743 * 60.00757 * 8 7 5 35 35 H 1.09000 * 109.47313 * 299.99940 * 8 7 5 36 36 H 1.08002 * 122.54228 * 359.97438 * 10 9 8 37 37 H 1.08001 * 125.20468 * 180.02562 * 11 10 9 38 38 H 1.08002 * 125.20431 * 0.02562 * 13 9 8 39 39 H 1.09003 * 110.36548 * 155.84755 * 14 5 4 40 40 H 1.09002 * 110.36656 * 278.05670 * 14 5 4 41 41 H 1.09002 * 109.47185 * 299.99315 * 18 16 15 42 42 H 1.08994 * 109.47440 * 59.99915 * 18 16 15 43 43 H 0.97006 * 120.00281 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7512 1.2417 5 6 3.2876 -1.5152 0.6904 6 1 4.1658 -0.8702 0.6593 7 7 3.5539 -2.7249 1.4802 8 6 4.9266 -3.2019 1.2657 9 6 5.1624 -4.4409 2.0907 10 6 4.9104 -5.7143 1.6102 11 6 5.1736 -6.7011 2.4683 12 16 5.7752 -6.0261 3.9769 13 6 5.6351 -4.3937 3.3371 14 6 2.8145 -1.8784 -0.7393 15 7 2.0300 -0.7125 -1.1849 16 6 1.8085 -0.3579 -2.4661 17 8 1.1452 0.6259 -2.7171 18 6 2.3852 -1.1839 -3.5869 19 16 1.9147 -0.4566 -5.1763 20 6 2.6996 -1.5885 -6.2750 21 1 3.2601 -2.4232 -5.8808 22 6 2.5966 -1.4080 -7.6474 23 7 3.1833 -2.2533 -8.4682 24 14 1.6265 0.0353 -8.3294 25 1 2.5276 1.2042 -8.4935 26 1 1.0500 -0.3341 -9.6472 27 1 0.5306 0.3833 -7.3897 28 1 -0.3634 -1.0277 -0.0078 29 1 -0.3634 0.5070 0.8939 30 1 -0.3634 0.5205 -0.8860 31 1 1.3050 -1.4482 1.6163 32 1 2.3528 -0.0488 2.0201 33 1 3.3760 -2.5633 2.4601 34 1 5.6316 -2.4266 1.5656 35 1 5.0697 -3.4349 0.2106 36 1 4.5296 -5.8953 0.6159 37 1 5.0388 -7.7536 2.2672 38 1 5.8911 -3.4912 3.8722 39 1 3.6717 -2.0319 -1.3950 40 1 2.1903 -2.7717 -0.7169 41 1 3.4718 -1.2022 -3.5029 42 1 1.9987 -2.2011 -3.5247 43 1 3.1117 -2.1270 -9.4273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725577294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -18.360554 kcal Electronic energy + Delta-G solvation = -24095.567392 eV Core-core repulsion = 20585.648513 eV Total energy + Delta-G solvation = -3509.918879 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30215 -39.52416 -38.62328 -35.78907 -34.68782 -33.37530 -31.61930 -30.36778 -29.70145 -27.86914 -26.88607 -26.65359 -23.68955 -22.99177 -21.83368 -20.41704 -19.65517 -19.46302 -18.56173 -18.21161 -17.56992 -17.12691 -16.55387 -16.31326 -16.16684 -15.81378 -15.76297 -14.98008 -14.87874 -14.65475 -14.45846 -14.16567 -13.95634 -13.78107 -13.58305 -13.55625 -13.35754 -13.24187 -13.05916 -13.00931 -12.95591 -12.65168 -12.56860 -12.07455 -11.95816 -11.87359 -11.71228 -11.52870 -11.18344 -10.93583 -10.56055 -9.76544 -9.71004 -9.44462 -9.24255 -9.02306 -8.52787 -6.24108 0.13377 0.81766 0.94756 1.12281 1.30313 1.44128 1.51622 1.52304 1.76502 2.04267 2.24069 2.66024 2.85303 3.17564 3.43403 3.56826 3.83411 3.99857 4.03048 4.13124 4.14988 4.20648 4.34353 4.37988 4.41851 4.50660 4.56952 4.65466 4.68286 4.73638 4.81989 4.86627 4.91550 4.99499 5.16092 5.16542 5.29274 5.46746 5.51882 5.60815 5.69581 5.99313 6.09907 6.35251 6.46731 6.92126 7.07299 8.59726 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002358 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.464891 B =11873.002200 C =13730.753732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.131 3.869 3 H 0.070 0.930 4 C -0.111 4.111 5 C 0.085 3.915 6 H 0.070 0.930 7 N -0.671 5.671 8 C 0.119 3.881 9 C -0.105 4.105 10 C -0.133 4.133 11 C -0.222 4.222 12 S 0.093 5.907 13 C -0.209 4.209 14 C 0.102 3.898 15 N -0.611 5.611 16 C 0.548 3.452 17 O -0.558 6.558 18 C -0.103 4.103 19 S -0.172 6.172 20 C -0.528 4.528 21 H 0.061 0.939 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.914 3.086 25 H -0.261 1.261 26 H -0.258 1.258 27 H -0.238 1.238 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.357 0.643 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -4.325 31.276 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.026 4.026 6 H 0.088 0.912 7 N -0.304 5.304 8 C -0.012 4.012 9 C -0.119 4.119 10 C -0.163 4.163 11 C -0.357 4.357 12 S 0.357 5.643 13 C -0.345 4.345 14 C -0.021 4.021 15 N -0.346 5.346 16 C 0.336 3.664 17 O -0.436 6.436 18 C -0.254 4.254 19 S 0.054 5.946 20 C -0.676 4.676 21 H 0.079 0.921 22 C -0.159 4.159 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.186 1.186 26 H -0.182 1.182 27 H -0.162 1.162 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.178 0.822 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.193 0.807 38 H 0.198 0.802 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.327 -3.992 31.594 32.018 hybrid contribution 0.666 0.126 -1.697 1.828 sum 3.993 -3.865 29.896 30.408 Atomic orbital electron populations 1.22090 0.94772 1.02208 1.02516 1.21728 0.94889 0.96429 0.84198 0.91203 1.22844 0.97114 0.99432 0.95471 1.22503 0.97659 0.90418 0.92019 0.91237 1.60234 1.24821 1.31489 1.13879 1.20625 0.88969 0.92505 0.99121 1.18885 1.02483 0.95621 0.94865 1.20273 1.02582 0.91756 1.01697 1.25862 1.08522 1.04166 0.97151 1.84281 1.64603 0.99069 1.16365 1.25746 1.08605 1.01195 0.98991 1.22494 0.95323 0.88078 0.96174 1.48446 1.52759 1.29365 1.04010 1.19574 0.79754 0.84345 0.82712 1.90670 1.40830 1.28603 1.83518 1.23214 1.04863 1.02768 0.94518 1.84671 1.70947 1.40339 0.98622 1.22430 1.37564 1.13740 0.93852 0.92066 1.25561 0.95490 0.98718 0.96176 1.70012 1.43542 1.37705 1.04166 0.85869 0.80939 0.79713 0.79867 1.18586 1.18193 1.16155 0.92427 0.89146 0.94545 0.88462 0.87317 0.82211 0.92887 0.90506 0.84156 0.80679 0.80239 0.90813 0.90185 0.87447 0.87636 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.10 71.98 0.66 -2.79 16 2 C 0.13 2.71 3.46 45.34 0.16 2.86 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -1.30 5.95 31.79 0.19 -1.11 16 5 C 0.08 1.12 3.32 46.31 0.15 1.28 16 6 H 0.07 0.89 7.92 -2.39 -0.02 0.87 16 7 N -0.67 -7.66 6.36 -488.37 -3.11 -10.77 16 8 C 0.12 1.43 5.81 85.56 0.50 1.93 16 9 C -0.11 -1.42 5.31 -20.92 -0.11 -1.53 16 10 C -0.13 -2.01 9.98 21.22 0.21 -1.79 16 11 C -0.22 -3.00 11.23 66.72 0.75 -2.25 16 12 S 0.09 1.12 23.34 -56.49 -1.32 -0.20 16 13 C -0.21 -2.38 10.98 66.72 0.73 -1.65 16 14 C 0.10 2.06 6.34 86.86 0.55 2.61 16 15 N -0.61 -16.29 3.06 -788.05 -2.41 -18.71 16 16 C 0.55 20.27 7.66 87.66 0.67 20.94 16 17 O -0.56 -24.77 14.90 -3.02 -0.05 -24.81 16 18 C -0.10 -4.12 5.16 71.24 0.37 -3.75 16 19 S -0.17 -8.95 18.55 -56.49 -1.05 -9.99 16 20 C -0.53 -31.25 10.04 67.96 0.68 -30.57 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.73 5.50 84.86 0.47 3.20 16 23 N -0.92 -56.25 13.97 21.65 0.30 -55.95 16 24 Si 0.91 45.49 27.74 68.60 1.90 47.40 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.07 6.88 -2.39 -0.02 1.05 16 31 H 0.10 1.06 7.85 -2.39 -0.02 1.04 16 32 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.36 3.01 8.52 -89.69 -0.76 2.24 16 34 H 0.05 0.53 8.07 -2.39 -0.02 0.51 16 35 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 36 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.07 1.53 7.48 -2.39 -0.02 1.51 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.11 4.00 7.85 -2.39 -0.02 3.99 16 42 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 43 H 0.28 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -73.90 380.77 0.45 -73.45 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.21 Total: 12.20 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.97 Total: -12.61 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.22 Total: -85.43 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.40 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -2.37 Total: -10.19 kcal Total: -73.90 0.45 -73.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725577294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.087 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds