Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46846 * 239.99499 * 2 1 3 5 5 N 1.46499 * 109.46840 * 185.00008 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21517 * 120.00102 * 0.02562 * 6 5 4 8 8 C 1.48076 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.39866 * 120.93277 * 359.97438 * 8 6 5 10 10 C 1.38084 * 119.02433 * 179.97438 * 9 8 6 11 11 N 1.31853 * 120.93627 * 359.97438 * 10 9 8 12 12 C 1.31762 * 122.07006 * 0.02562 * 11 10 9 13 13 C 1.38351 * 120.86977 * 359.73717 * 12 11 10 14 14 Cl 1.73609 * 120.51655 * 180.28635 * 13 12 11 15 15 N 1.46900 * 109.46916 * 119.99923 * 2 1 3 16 16 C 1.46905 * 110.99977 * 274.99671 * 15 2 1 17 17 C 1.50696 * 109.47026 * 180.02562 * 16 15 2 18 18 O 1.21295 * 120.00154 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99785 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99857 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00245 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99895 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47345 * 89.99317 * 24 22 20 26 26 H 1.48493 * 109.47081 * 209.99845 * 24 22 20 27 27 H 1.48496 * 109.46787 * 329.99451 * 24 22 20 28 28 H 1.09002 * 109.46824 * 60.00084 * 1 2 3 29 29 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46751 * 300.00344 * 1 2 3 31 31 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 32 32 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 33 33 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 34 34 H 1.08008 * 120.48960 * 359.95728 * 9 8 6 35 35 H 1.07990 * 119.53449 * 179.97438 * 10 9 8 36 36 H 1.08002 * 119.55916 * 180.02562 * 12 11 10 37 37 H 1.00900 * 111.00219 * 38.95150 * 15 2 1 38 38 H 1.08994 * 109.47293 * 300.00324 * 16 15 2 39 39 H 1.09001 * 109.46690 * 60.00424 * 16 15 2 40 40 H 0.97002 * 120.00416 * 359.97438 * 19 17 16 41 41 H 0.96994 * 120.00261 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1911 7 8 3.5689 -1.8836 -3.1421 8 6 5.6488 -1.5353 -2.1316 9 6 6.3638 -1.0178 -1.0466 10 6 7.7392 -1.1397 -1.0313 11 7 8.3781 -1.7337 -2.0199 12 6 7.7448 -2.2352 -3.0609 13 6 6.3665 -2.1619 -3.1562 14 17 5.5409 -2.8323 -4.5284 15 7 2.0197 -0.6925 1.1995 16 6 2.0825 0.2227 2.3469 17 6 2.5885 -0.5214 3.5557 18 8 2.8687 -1.6984 3.4700 19 7 2.7287 0.1207 4.7324 20 6 3.1895 -0.5561 5.8320 21 1 3.4398 -1.6039 5.7555 22 6 3.3345 0.1061 7.0449 23 7 3.0305 1.3811 7.1380 24 14 3.9617 -0.8162 8.5434 25 1 5.4428 -0.7223 8.5985 26 1 3.3817 -0.2170 9.7721 27 1 3.5593 -2.2426 8.4509 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6053 -1.7199 -1.2951 32 1 1.7517 -0.1585 -2.1370 33 1 3.9824 -0.4629 -0.4316 34 1 5.8479 -0.5299 -0.2328 35 1 8.2996 -0.7427 -0.1978 36 1 8.3088 -2.7138 -3.8478 37 1 1.4496 -1.4979 1.4101 38 1 2.7589 1.0462 2.1182 39 1 1.0871 0.6164 2.5525 40 1 2.5042 1.0619 4.8011 41 1 3.1320 1.8434 7.9846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731620423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -59.171634 kcal Electronic energy + Delta-G solvation = -26257.799723 eV Core-core repulsion = 22197.774222 eV Total energy + Delta-G solvation = -4060.025501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70481 -40.34094 -40.00446 -38.14145 -37.58997 -35.95066 -35.18590 -33.77733 -33.23117 -32.16593 -31.75134 -27.94066 -27.74199 -25.79498 -25.31754 -24.44172 -22.01652 -21.75260 -21.07613 -19.89796 -19.34528 -18.07751 -17.67896 -17.25150 -17.01380 -16.68099 -16.58565 -16.30440 -16.27155 -15.99026 -15.60023 -15.15941 -15.10344 -14.96563 -14.60156 -14.34782 -13.72873 -13.64630 -13.41665 -13.37367 -13.26262 -13.04465 -13.01426 -12.75782 -12.52225 -12.38574 -12.25818 -12.11909 -11.88921 -11.47649 -11.34548 -11.03385 -10.48266 -10.30452 -10.11652 -9.99536 -9.97946 -9.33901 -8.44650 -5.92397 -0.55913 -0.18351 0.96921 1.39137 1.43726 1.55193 1.77231 2.03766 2.10213 2.30428 2.62462 2.91272 3.23729 3.33483 3.44227 3.52377 3.59733 3.69756 3.85083 4.07699 4.12053 4.33893 4.37462 4.50348 4.52649 4.54707 4.64620 4.66970 4.73086 4.80411 4.90404 5.01380 5.26394 5.33058 5.41938 5.43768 5.90986 6.11909 6.36573 6.47278 6.63478 6.66374 7.10785 7.16345 7.61116 8.16489 8.72560 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.002556 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.564385 B =10950.467404 C =12726.506232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.103 0.897 4 C 0.136 3.864 5 N -0.694 5.694 6 C 0.546 3.454 7 O -0.548 6.548 8 C -0.096 4.096 9 C -0.120 4.120 10 C 0.100 3.900 11 N -0.469 5.469 12 C 0.108 3.892 13 C -0.059 4.059 14 Cl -0.030 7.030 15 N -0.674 5.674 16 C 0.065 3.935 17 C 0.439 3.561 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.987 3.013 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.275 1.275 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.413 0.587 34 H 0.167 0.833 35 H 0.198 0.802 36 H 0.192 0.808 37 H 0.345 0.655 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.396 0.604 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 1.882 -18.856 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 H 0.121 0.879 4 C 0.012 3.988 5 N -0.346 5.346 6 C 0.332 3.668 7 O -0.427 6.427 8 C -0.108 4.108 9 C -0.141 4.141 10 C -0.056 4.056 11 N -0.179 5.179 12 C -0.049 4.049 13 C -0.089 4.089 14 Cl -0.001 7.001 15 N -0.306 5.306 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.811 3.189 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.185 0.815 35 H 0.214 0.786 36 H 0.208 0.792 37 H 0.164 0.836 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.080 0.883 -19.649 20.088 hybrid contribution -1.646 0.182 1.411 2.176 sum 2.434 1.066 -18.238 18.431 Atomic orbital electron populations 1.22383 0.94879 1.02805 1.03539 1.21875 0.94391 0.98565 0.88539 0.87874 1.21435 0.78801 1.00829 0.97717 1.45693 1.08442 1.57911 1.22563 1.18195 0.86652 0.78882 0.83088 1.90828 1.69822 1.48187 1.33867 1.20399 0.94399 1.00277 0.95720 1.22690 0.96079 0.98112 0.97213 1.23403 0.91695 0.93662 0.96823 1.67787 1.40681 1.08108 1.01287 1.23187 0.88715 0.96160 0.96875 1.22405 0.94544 1.00209 0.91754 1.98415 1.78675 1.82850 1.40160 1.60176 1.58418 1.09083 1.02920 1.21588 1.01387 0.95308 0.88411 1.20934 0.83277 0.87984 0.85164 1.90517 1.56582 1.18358 1.85472 1.41932 1.58368 1.12637 1.08197 1.19616 1.41890 0.95880 0.88586 0.90445 1.25949 0.97362 0.96555 1.01236 1.69654 1.48747 1.09612 1.28098 0.85006 0.78566 0.78040 0.77239 1.19631 1.19802 1.19950 0.89974 0.92432 0.91927 0.92561 0.89870 0.74899 0.81510 0.78555 0.79153 0.83586 0.87012 0.91543 0.76964 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 9.16 71.98 0.66 -1.98 16 2 C 0.08 1.31 2.75 44.92 0.12 1.43 16 3 H 0.10 1.47 7.80 -2.39 -0.02 1.45 16 4 C 0.14 2.63 5.37 86.38 0.46 3.09 16 5 N -0.69 -14.73 5.35 -465.75 -2.49 -17.22 16 6 C 0.55 13.85 7.79 86.85 0.68 14.53 16 7 O -0.55 -16.83 14.17 -3.77 -0.05 -16.88 16 8 C -0.10 -2.18 5.91 -19.86 -0.12 -2.29 16 9 C -0.12 -2.17 9.61 22.63 0.22 -1.95 16 10 C 0.10 1.71 11.17 84.65 0.95 2.65 16 11 N -0.47 -9.28 10.33 -195.91 -2.02 -11.31 16 12 C 0.11 2.04 10.99 84.73 0.93 2.97 16 13 C -0.06 -1.31 6.38 22.71 0.14 -1.17 16 14 Cl -0.03 -0.71 26.24 -2.72 -0.07 -0.78 16 15 N -0.67 -16.75 5.31 -495.58 -2.63 -19.39 16 16 C 0.07 1.82 5.97 85.55 0.51 2.33 16 17 C 0.44 18.75 7.82 87.66 0.69 19.43 16 18 O -0.62 -31.88 15.78 -3.08 -0.05 -31.93 16 19 N -0.57 -27.27 5.29 -306.98 -1.62 -28.90 16 20 C -0.33 -17.86 9.68 84.04 0.81 -17.05 16 21 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -47.73 13.05 21.66 0.28 -47.44 16 24 Si 0.99 41.55 29.55 68.60 2.03 43.58 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.06 0.97 7.45 -2.39 -0.02 0.95 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.41 7.97 6.28 -92.71 -0.58 7.39 16 34 H 0.17 2.40 6.54 -2.91 -0.02 2.38 16 35 H 0.20 2.18 8.06 -2.92 -0.02 2.16 16 36 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.35 9.84 8.17 -89.69 -0.73 9.11 16 38 H 0.11 2.60 8.05 -2.39 -0.02 2.58 16 39 H 0.07 1.63 7.44 -2.39 -0.02 1.61 16 40 H 0.40 17.83 7.90 -92.71 -0.73 17.09 16 41 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -69.90 368.25 -1.05 -70.95 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.94 Total: 37.42 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 6.52 Total: 21.89 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -8.49 Total: -124.25 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.10 Total: -48.81 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.07 Total: -0.78 kcal Total: -69.90 -1.05 -70.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731620423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.774 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds