Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46892 * 111.00416 * 2 1 4 4 C 1.52999 * 109.47163 * 66.04497 * 3 2 1 5 5 N 1.46502 * 109.47517 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00183 * 180.02562 * 5 4 3 7 7 O 1.21523 * 119.99795 * 0.02562 * 6 5 4 8 8 C 1.48112 * 119.99953 * 179.97438 * 6 5 4 9 9 C 1.39347 * 119.70677 * 180.02562 * 8 6 5 10 10 C 1.38525 * 119.07595 * 179.97438 * 9 8 6 11 11 C 1.38770 * 118.47814 * 359.97438 * 10 9 8 12 12 Cl 1.73596 * 120.33517 * 179.97438 * 11 10 9 13 13 C 1.38724 * 119.32369 * 0.02562 * 11 10 9 14 14 N 1.31490 * 120.87918 * 0.02562 * 13 11 10 15 15 C 1.46906 * 110.99909 * 236.04504 * 2 1 3 16 16 C 1.50701 * 109.47002 * 293.95524 * 15 2 1 17 17 O 1.21289 * 120.00271 * 0.02562 * 16 15 2 18 18 N 1.34781 * 119.99528 * 180.02562 * 16 15 2 19 19 C 1.37093 * 119.99500 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00323 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99737 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99977 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47026 * 119.99719 * 23 21 19 26 26 H 1.48493 * 109.47199 * 240.00262 * 23 21 19 27 27 H 1.09005 * 109.46939 * 59.99788 * 1 2 3 28 28 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46775 * 300.00046 * 1 2 3 30 30 H 1.08999 * 109.47168 * 306.05028 * 3 2 1 31 31 H 1.08994 * 109.47510 * 186.04746 * 3 2 1 32 32 H 1.09003 * 109.47081 * 60.00051 * 4 3 2 33 33 H 1.09006 * 109.47400 * 300.00383 * 4 3 2 34 34 H 0.97005 * 119.99635 * 359.97438 * 5 4 3 35 35 H 1.08003 * 120.46295 * 0.25022 * 9 8 6 36 36 H 1.08003 * 120.75655 * 180.02562 * 10 9 8 37 37 H 1.08000 * 119.55589 * 180.02562 * 13 11 10 38 38 H 1.08997 * 109.47112 * 53.95777 * 15 2 1 39 39 H 1.09000 * 109.46883 * 173.95270 * 15 2 1 40 40 H 0.96997 * 120.00229 * 0.02562 * 18 16 15 41 41 H 0.97001 * 119.99993 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 7 2.1561 3.4253 1.3181 6 6 1.9556 4.2241 2.3849 7 8 1.3400 3.8095 3.3472 8 6 2.4864 5.6068 2.3849 9 6 2.2760 6.4273 3.4914 10 6 2.7786 7.7180 3.4777 11 6 3.4761 8.1446 2.3564 12 17 4.1262 9.7528 2.2875 13 6 3.6476 7.2732 1.2907 14 7 3.1583 6.0534 1.3310 15 6 1.9954 -0.7660 -1.1376 16 6 1.6369 -2.2205 -0.9728 17 8 1.0046 -2.5832 -0.0034 18 7 2.0189 -3.1182 -1.9028 19 6 1.6922 -4.4412 -1.7532 20 1 1.1285 -4.7640 -0.8904 21 6 2.0855 -5.3666 -2.7121 22 7 2.7701 -4.9736 -3.7627 23 14 1.6411 -7.1695 -2.5080 24 1 0.8728 -7.3505 -1.2500 25 1 0.8138 -7.6089 -3.6602 26 1 2.8827 -7.9821 -2.4515 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5612 1.9273 -0.8309 31 1 3.0797 1.3443 -0.1083 32 1 2.0659 1.5014 2.1492 33 1 0.5472 2.0844 1.4265 34 1 2.6484 3.7558 0.5504 35 1 1.7324 6.0605 4.3496 36 1 2.6318 8.3769 4.3207 37 1 4.1901 7.6012 0.4164 38 1 1.5612 -0.3873 -2.0628 39 1 3.0797 -0.6611 -1.1756 40 1 2.5248 -2.8282 -2.6779 41 1 3.0450 -5.6197 -4.4319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731792368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -54.503068 kcal Electronic energy + Delta-G solvation = -25243.631513 eV Core-core repulsion = 21183.808456 eV Total energy + Delta-G solvation = -4059.823057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80944 -40.46342 -40.10368 -38.19128 -37.73524 -36.06240 -35.59534 -33.71291 -33.26144 -32.56099 -30.60154 -29.08367 -27.10949 -26.13121 -25.03218 -24.56516 -22.34805 -21.97298 -20.95814 -19.84110 -19.36841 -18.18978 -17.78520 -17.60666 -17.03249 -16.97895 -16.57811 -16.37463 -16.20872 -15.87158 -15.71715 -15.29683 -15.10374 -15.01435 -14.68357 -14.33417 -14.27881 -13.77035 -13.64659 -13.44847 -13.10440 -13.03157 -12.94007 -12.58144 -12.54415 -12.39536 -12.38181 -12.15910 -12.08867 -11.56701 -11.44943 -11.06405 -10.80650 -10.33308 -10.27266 -10.04137 -9.97685 -9.23972 -8.44999 -5.93092 -0.70657 -0.01310 0.84625 1.37539 1.42873 1.49483 1.56732 1.82001 2.08093 2.30797 2.60129 2.79127 3.03492 3.22219 3.43741 3.56678 3.61586 3.74673 3.83491 3.91057 4.05296 4.26492 4.37304 4.46356 4.54268 4.56325 4.62630 4.65096 4.66947 4.77665 4.85435 4.93304 5.21416 5.21686 5.25815 5.43421 5.85739 6.05698 6.16306 6.22875 6.55595 6.63326 7.01352 7.15684 7.59322 8.15685 8.72587 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.001492 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.191237 B =18764.244927 C =19380.723103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.052 3.948 4 C 0.128 3.872 5 N -0.695 5.695 6 C 0.567 3.433 7 O -0.565 6.565 8 C 0.065 3.935 9 C -0.101 4.101 10 C -0.064 4.064 11 C -0.069 4.069 12 Cl -0.035 7.035 13 C 0.113 3.887 14 N -0.453 5.453 15 C 0.060 3.940 16 C 0.440 3.560 17 O -0.615 6.615 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.421 0.579 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.197 0.803 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.396 0.604 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 32.053 7.388 33.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.263 5.263 3 C -0.076 4.076 4 C 0.004 3.996 5 N -0.347 5.347 6 C 0.352 3.648 7 O -0.444 6.444 8 C -0.072 4.072 9 C -0.122 4.122 10 C -0.090 4.090 11 C -0.098 4.098 12 Cl -0.006 7.006 13 C -0.048 4.048 14 N -0.165 5.165 15 C -0.071 4.071 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.197 1.197 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.259 0.741 35 H 0.178 0.822 36 H 0.198 0.802 37 H 0.214 0.786 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.230 0.770 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.624 30.690 8.254 31.986 hybrid contribution -0.108 0.157 -0.716 0.741 sum 3.516 30.847 7.538 31.949 Atomic orbital electron populations 1.22488 0.86805 1.02477 1.00689 1.61334 1.08963 1.12937 1.43024 1.22233 1.01885 0.87475 0.95979 1.21223 0.99135 0.80760 0.98519 1.45641 1.56133 1.13246 1.19647 1.18084 0.79408 0.84661 0.82618 1.90808 1.42652 1.75425 1.35491 1.21080 0.98944 0.94646 0.92571 1.22262 0.97873 0.93102 0.98958 1.21881 0.93532 0.95480 0.98081 1.22479 1.00288 0.89461 0.97591 1.98425 1.84172 1.19667 1.98310 1.23252 0.96151 0.87140 0.98249 1.67655 1.07823 1.15808 1.25218 1.21742 1.02358 0.89939 0.93068 1.20814 0.83699 0.88873 0.83858 1.90474 1.45144 1.81482 1.33036 1.41925 1.50068 1.06996 1.22226 1.19686 1.34258 0.84143 1.08036 0.90420 1.25996 0.96316 1.04182 0.94700 1.69671 1.38205 1.37037 1.11220 0.84892 0.78222 0.77145 0.78206 1.19929 1.19639 1.19665 0.94671 0.92448 0.90652 0.92126 0.88403 0.91837 0.91651 0.74119 0.82155 0.80221 0.78617 0.90924 0.86751 0.76960 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 8.96 127.69 1.14 1.88 16 2 N -0.54 -16.83 4.50 -927.05 -4.17 -21.01 16 3 C 0.05 1.13 5.07 86.30 0.44 1.57 16 4 C 0.13 2.95 5.60 86.38 0.48 3.43 16 5 N -0.70 -13.71 5.54 -465.70 -2.58 -16.30 16 6 C 0.57 12.99 7.81 86.87 0.68 13.66 16 7 O -0.57 -16.81 16.32 -3.79 -0.06 -16.87 16 8 C 0.06 1.15 6.75 41.90 0.28 1.43 16 9 C -0.10 -1.38 9.63 22.61 0.22 -1.16 16 10 C -0.06 -0.57 9.97 22.47 0.22 -0.34 16 11 C -0.07 -0.64 6.35 22.51 0.14 -0.49 16 12 Cl -0.03 -0.27 28.99 -2.72 -0.08 -0.35 16 13 C 0.11 1.17 10.98 84.86 0.93 2.10 16 14 N -0.45 -6.78 9.54 -184.82 -1.76 -8.54 16 15 C 0.06 1.99 5.45 85.56 0.47 2.46 16 16 C 0.44 20.78 7.47 87.66 0.66 21.43 16 17 O -0.62 -34.02 13.91 -3.06 -0.04 -34.07 16 18 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 2.32 5.82 -2.38 -0.01 2.31 16 29 H 0.07 2.16 6.47 -2.38 -0.02 2.15 16 30 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.10 1.82 7.93 -2.39 -0.02 1.80 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.63 6.55 -2.38 -0.02 1.62 16 34 H 0.42 6.44 7.80 -92.70 -0.72 5.72 16 35 H 0.16 2.11 7.64 -2.91 -0.02 2.09 16 36 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 37 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 39 H 0.11 3.25 7.93 -2.39 -0.02 3.23 16 40 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 41 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -73.07 369.40 -1.42 -74.50 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.36 Total: 29.82 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 6.95 Total: 27.74 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -9.86 Total: -125.89 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.10 Total: -50.94 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -73.07 -1.42 -74.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731792368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.993 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds