Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47268 * 2 1 4 4 N 1.46505 * 109.46832 * 119.99761 * 2 1 3 5 5 C 1.36934 * 120.00024 * 274.99913 * 4 2 1 6 6 H 1.08005 * 120.00123 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00244 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99726 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00591 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47031 * 59.99510 * 9 7 5 11 11 H 1.48495 * 109.47511 * 180.02562 * 9 7 5 12 12 H 1.48512 * 109.46914 * 300.00123 * 9 7 5 13 13 C 1.52996 * 109.46999 * 239.99522 * 2 1 3 14 14 H 1.09000 * 110.92032 * 299.88929 * 13 2 1 15 15 C 1.55449 * 111.11452 * 175.89536 * 13 2 1 16 16 C 1.54325 * 102.96646 * 206.46847 * 15 13 2 17 17 N 1.47023 * 107.27359 * 22.19375 * 16 15 13 18 18 C 1.34771 * 125.64669 * 181.08416 * 17 16 15 19 19 O 1.21563 * 119.99991 * 174.69750 * 18 17 16 20 20 C 1.47774 * 120.00371 * 354.69300 * 18 17 16 21 21 C 1.39609 * 120.14172 * 315.17969 * 20 18 17 22 22 C 1.38128 * 119.83777 * 179.73953 * 21 20 18 23 23 F 1.35100 * 119.93405 * 180.22735 * 22 21 20 24 24 C 1.38621 * 120.12859 * 0.51316 * 22 21 20 25 25 C 1.38244 * 120.29361 * 359.76273 * 24 22 21 26 26 C 1.38150 * 120.15518 * 359.97438 * 25 24 22 27 27 Cl 1.73604 * 120.06327 * 180.02562 * 26 25 24 28 28 C 1.47421 * 108.70185 * 1.05920 * 17 16 15 29 29 H 1.09000 * 109.47576 * 304.60659 * 1 2 3 30 30 H 1.09003 * 109.46853 * 64.60422 * 1 2 3 31 31 H 1.08996 * 109.47069 * 184.60496 * 1 2 3 32 32 H 0.97000 * 120.00049 * 95.00082 * 4 2 1 33 33 H 0.97000 * 120.00125 * 180.02562 * 8 7 5 34 34 H 1.08990 * 110.70876 * 88.09512 * 15 13 2 35 35 H 1.09005 * 110.85827 * 324.90588 * 15 13 2 36 36 H 1.09003 * 109.88127 * 262.77432 * 16 15 13 37 37 H 1.08997 * 109.88287 * 141.61147 * 16 15 13 38 38 H 1.08001 * 120.08004 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.85544 * 179.73994 * 24 22 21 40 40 H 1.08002 * 119.92041 * 180.02562 * 25 24 22 41 41 H 1.08994 * 110.36490 * 94.71309 * 28 17 16 42 42 H 1.09003 * 110.36449 * 216.92530 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8918 1.0404 2.4244 7 6 2.6122 -0.6616 3.5091 8 7 2.9261 -1.9385 3.4498 9 14 2.7899 0.2701 5.1184 10 1 1.4672 0.8059 5.5288 11 1 3.3001 -0.6479 6.1681 12 1 3.7444 1.3933 4.9372 13 6 2.0400 -0.7213 -1.2492 14 1 1.6913 -1.7538 -1.2719 15 6 3.5903 -0.6544 -1.3408 16 6 3.8530 -0.7713 -2.8570 17 7 2.6224 -0.3567 -3.5465 18 6 2.4384 -0.3377 -4.8814 19 8 1.3457 -0.0676 -5.3406 20 6 3.5648 -0.6451 -5.7871 21 6 4.8222 -0.0835 -5.5576 22 6 5.8721 -0.3794 -6.4051 23 9 7.0908 0.1594 -6.1822 24 6 5.6762 -1.2233 -7.4872 25 6 4.4320 -1.7779 -7.7228 26 6 3.3749 -1.4944 -6.8797 27 17 1.8136 -2.1926 -7.1774 28 6 1.6230 0.0341 -2.5357 29 1 -0.3634 0.5836 0.8458 30 1 -0.3633 0.4408 -0.9284 31 1 -0.3633 -1.0243 0.0825 32 1 2.2490 -1.6318 1.1528 33 1 3.2494 -2.3957 4.2418 34 1 4.0444 -1.4880 -0.8053 35 1 3.9611 0.2963 -0.9574 36 1 4.0918 -1.8035 -3.1133 37 1 4.6762 -0.1164 -3.1422 38 1 4.9746 0.5777 -4.7174 39 1 6.4992 -1.4484 -8.1494 40 1 4.2863 -2.4350 -8.5674 41 1 1.6524 1.1110 -2.3697 42 1 0.6255 -0.2734 -2.8497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733537801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -60.313665 kcal Electronic energy + Delta-G solvation = -26869.860027 eV Core-core repulsion = 22789.865042 eV Total energy + Delta-G solvation = -4079.994985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.03679 -41.61913 -39.91175 -38.80014 -37.51489 -36.80075 -34.32969 -32.95699 -31.66572 -31.36664 -30.81177 -28.83450 -26.51753 -25.58798 -24.12487 -23.63733 -22.80180 -21.11883 -20.95727 -19.20995 -18.84001 -18.18313 -17.78836 -17.45726 -17.23594 -16.73416 -16.45019 -16.39550 -15.71146 -15.36315 -15.21938 -14.89333 -14.72497 -14.52540 -14.31408 -14.07840 -13.90060 -13.79863 -13.69089 -13.38964 -13.18871 -12.89821 -12.74917 -12.69707 -12.37452 -12.30877 -12.21668 -12.11300 -11.97650 -11.64485 -11.54208 -11.38487 -11.11058 -10.89047 -10.39396 -9.78576 -9.71842 -8.96146 -7.89376 -5.16313 -0.49064 -0.17112 0.96971 1.44876 1.50194 1.51634 1.57494 1.76572 2.28356 2.59460 2.94768 3.22851 3.42558 3.45806 3.61239 3.64343 3.80682 3.85734 3.94998 4.18593 4.25062 4.27542 4.35569 4.48783 4.54222 4.60386 4.66982 4.71165 4.76839 4.84737 4.87099 4.90622 4.98375 5.05073 5.13996 5.19968 5.31387 5.38644 5.49619 5.56619 5.61558 6.31618 6.34120 6.89669 7.39840 8.15845 8.39332 9.33756 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.002598 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.706888 B =10773.490771 C =11823.421240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.731 5.731 5 C -0.232 4.232 6 H 0.074 0.926 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.278 1.278 13 C -0.093 4.093 14 H 0.074 0.926 15 C -0.112 4.112 16 C 0.100 3.900 17 N -0.608 5.608 18 C 0.569 3.431 19 O -0.552 6.552 20 C -0.105 4.105 21 C -0.114 4.114 22 C 0.097 3.903 23 F -0.133 7.133 24 C -0.105 4.105 25 C -0.077 4.077 26 C -0.020 4.020 27 Cl -0.053 7.053 28 C 0.121 3.879 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.373 0.627 33 H 0.249 0.751 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.184 0.816 40 H 0.179 0.821 41 H 0.079 0.921 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 0.939 -25.876 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.371 5.371 5 C -0.364 4.364 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.204 1.204 13 C -0.113 4.113 14 H 0.093 0.907 15 C -0.150 4.150 16 C -0.022 4.022 17 N -0.340 5.340 18 C 0.358 3.642 19 O -0.431 6.431 20 C -0.109 4.109 21 C -0.133 4.133 22 C 0.078 3.922 23 F -0.111 7.111 24 C -0.123 4.123 25 C -0.095 4.095 26 C -0.047 4.047 27 Cl -0.024 7.024 28 C -0.002 4.002 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.197 0.803 41 H 0.097 0.903 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.264 1.199 -26.081 26.849 hybrid contribution -0.032 -0.002 1.492 1.492 sum 6.231 1.197 -24.589 25.394 Atomic orbital electron populations 1.22377 0.98227 1.00729 1.00669 1.20288 0.92309 0.94982 0.84949 0.93215 1.42511 1.78340 1.10268 1.05931 1.19523 1.34451 0.94078 0.88314 0.90850 1.25423 1.03307 0.96784 1.01039 1.69793 1.52809 1.10063 1.29270 0.85338 0.77768 0.77415 0.80001 1.20914 1.22538 1.20417 1.22495 0.96088 0.99616 0.93142 0.90714 1.22546 0.95229 1.03529 0.93669 1.22380 0.86535 1.01156 0.92108 1.48462 1.16595 1.64597 1.04389 1.17951 0.87667 0.77533 0.81067 1.90817 1.26408 1.49909 1.75931 1.19437 0.93851 1.00928 0.96639 1.21367 0.90027 1.01008 1.00910 1.17646 0.80419 0.97219 0.96917 1.91560 1.40858 1.84309 1.94390 1.21651 0.99014 0.95237 0.96444 1.21224 0.89552 0.99605 0.99143 1.21218 0.88977 0.98152 0.96398 1.98422 1.26385 1.82384 1.95223 1.22227 0.92343 0.99529 0.86100 0.94389 0.91423 0.94174 0.79485 0.94229 0.90507 0.90547 0.90355 0.89067 0.82457 0.79870 0.80341 0.90264 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 9.39 71.98 0.68 -4.80 16 2 C 0.18 6.64 2.41 44.99 0.11 6.74 16 3 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 4 N -0.73 -34.37 4.89 -322.94 -1.58 -35.95 16 5 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 8 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 9 Si 0.96 45.17 29.55 68.60 2.03 47.20 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 C -0.09 -2.77 2.64 -9.30 -0.02 -2.79 16 14 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.11 -3.00 6.21 31.89 0.20 -2.80 16 16 C 0.10 2.13 5.92 86.73 0.51 2.64 16 17 N -0.61 -15.25 3.33 -815.28 -2.71 -17.96 16 18 C 0.57 15.36 7.00 86.77 0.61 15.97 16 19 O -0.55 -18.46 15.80 -3.91 -0.06 -18.52 16 20 C -0.10 -2.20 5.38 -20.08 -0.11 -2.31 16 21 C -0.11 -1.90 8.41 22.57 0.19 -1.71 16 22 C 0.10 1.35 7.29 22.34 0.16 1.51 16 23 F -0.13 -2.02 17.26 44.97 0.78 -1.24 16 24 C -0.10 -0.98 10.02 22.36 0.22 -0.76 16 25 C -0.08 -0.86 9.82 22.25 0.22 -0.64 16 26 C -0.02 -0.37 6.34 22.60 0.14 -0.22 16 27 Cl -0.05 -1.18 26.99 -2.72 -0.07 -1.26 16 28 C 0.12 3.22 5.44 86.86 0.47 3.69 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.90 7.14 -2.39 -0.02 1.89 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.37 18.99 7.80 -92.71 -0.72 18.27 16 33 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.13 8.05 -2.38 -0.02 2.11 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.54 5.74 -2.39 -0.01 1.53 16 38 H 0.16 2.36 6.17 -2.91 -0.02 2.34 16 39 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 40 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 41 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 42 H 0.07 2.09 7.78 -2.39 -0.02 2.08 16 Total: -1.00 -66.95 365.64 3.68 -63.27 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.34 Total: 22.26 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.68 Total: -0.54 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.01 Total: -111.17 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.26 kcal Total: -66.95 3.68 -63.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733537801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.955 kcal (2) G-P(sol) polarization free energy of solvation -66.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds