Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47025 * 2 1 4 4 N 1.46494 * 109.47005 * 120.00451 * 2 1 3 5 5 C 1.36942 * 119.99833 * 275.00162 * 4 2 1 6 6 H 1.07997 * 120.00316 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99835 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99721 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47531 * 60.00039 * 9 7 5 11 11 H 1.48505 * 109.46808 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47103 * 299.99512 * 9 7 5 13 13 C 1.52999 * 109.46873 * 240.00208 * 2 1 3 14 14 H 1.09002 * 110.89085 * 296.11737 * 13 2 1 15 15 C 1.55153 * 111.00605 * 60.00621 * 13 2 1 16 16 C 1.54317 * 102.94497 * 153.57554 * 15 13 2 17 17 N 1.47021 * 107.27102 * 337.80291 * 16 15 13 18 18 C 1.34780 * 125.64944 * 178.99096 * 17 16 15 19 19 O 1.21563 * 119.99982 * 175.12561 * 18 17 16 20 20 C 1.47770 * 119.99858 * 355.11508 * 18 17 16 21 21 C 1.39615 * 120.14140 * 48.00980 * 20 18 17 22 22 C 1.38122 * 119.83697 * 179.97438 * 21 20 18 23 23 F 1.35100 * 119.93235 * 179.97438 * 22 21 20 24 24 C 1.38619 * 120.13059 * 359.97438 * 22 21 20 25 25 C 1.38241 * 120.29493 * 359.97438 * 24 22 21 26 26 C 1.38153 * 120.15762 * 359.76525 * 25 24 22 27 27 Cl 1.73598 * 120.06922 * 180.25775 * 26 25 24 28 28 C 1.47422 * 108.70061 * 358.94480 * 17 16 15 29 29 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46738 * 59.99915 * 1 2 3 31 31 H 1.09002 * 109.46904 * 300.00008 * 1 2 3 32 32 H 0.96997 * 120.00333 * 94.99828 * 4 2 1 33 33 H 0.96999 * 119.99599 * 179.97438 * 8 7 5 34 34 H 1.09007 * 110.71572 * 271.93856 * 15 13 2 35 35 H 1.09001 * 110.72610 * 35.20801 * 15 13 2 36 36 H 1.09002 * 109.88644 * 97.22457 * 16 15 13 37 37 H 1.09004 * 109.88155 * 218.22916 * 16 15 13 38 38 H 1.07995 * 120.08380 * 0.02562 * 21 20 18 39 39 H 1.08006 * 119.85593 * 180.02562 * 24 22 21 40 40 H 1.08003 * 119.92044 * 180.02562 * 25 24 22 41 41 H 1.09005 * 110.36546 * 265.28828 * 28 17 16 42 42 H 1.09003 * 110.36532 * 142.96879 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6122 -0.6619 3.5090 8 7 2.9263 -1.9387 3.4495 9 14 2.7912 0.2701 5.1180 10 1 1.4691 0.8068 5.5289 11 1 3.3013 -0.6482 6.1677 12 1 3.7464 1.3925 4.9362 13 6 2.0400 -0.7212 -1.2493 14 1 1.7469 -1.7710 -1.2389 15 6 1.5427 -0.0176 -2.5396 16 6 2.6250 -0.3891 -3.5750 17 7 3.8427 -0.7365 -2.8280 18 6 5.0100 -1.1361 -3.3706 19 8 5.9810 -1.3131 -2.6610 20 6 5.1092 -1.3593 -4.8279 21 6 4.6198 -0.4020 -5.7187 22 6 4.7163 -0.6169 -7.0797 23 9 4.2430 0.3079 -7.9434 24 6 5.2979 -1.7795 -7.5611 25 6 5.7852 -2.7304 -6.6840 26 6 5.6998 -2.5255 -5.3204 27 17 6.3184 -3.7181 -4.2211 28 6 3.5759 -0.5742 -1.3872 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 1.1525 33 1 3.2503 -2.3958 4.2414 34 1 0.5704 -0.4076 -2.8412 35 1 1.4991 1.0622 -2.3978 36 1 2.2955 -1.2442 -4.1652 37 1 2.8186 0.4605 -4.2298 38 1 4.1677 0.5045 -5.3446 39 1 5.3714 -1.9427 -8.6262 40 1 6.2375 -3.6338 -7.0657 41 1 3.8942 0.4128 -1.0513 42 1 4.0842 -1.3520 -0.8173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733537804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -62.407719 kcal Electronic energy + Delta-G solvation = -26972.214615 eV Core-core repulsion = 22892.128825 eV Total energy + Delta-G solvation = -4080.085790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.02602 -41.61829 -39.91516 -38.82459 -37.53463 -36.80847 -34.37388 -32.96558 -31.81797 -31.38991 -30.04414 -29.56395 -26.13001 -25.78807 -24.10867 -23.62457 -22.88466 -21.08580 -20.94388 -19.29411 -18.71669 -18.15531 -17.79558 -17.51175 -17.16053 -16.72842 -16.52958 -16.43565 -15.65733 -15.43067 -15.21744 -15.05292 -14.72112 -14.41722 -14.34883 -14.15253 -13.96529 -13.67381 -13.62323 -13.34271 -13.13006 -12.84062 -12.72554 -12.63561 -12.42284 -12.35718 -12.24808 -12.12145 -11.99742 -11.71137 -11.53220 -11.38402 -11.10936 -10.91466 -10.39294 -9.80355 -9.71457 -8.98002 -7.91768 -5.19175 -0.47880 -0.17059 0.96843 1.42939 1.46124 1.49073 1.54668 1.77852 2.26637 2.57124 2.94529 3.24927 3.41196 3.45417 3.60164 3.69426 3.80413 3.86454 3.95273 4.15323 4.24383 4.26626 4.40258 4.52578 4.55886 4.65364 4.66653 4.75629 4.84373 4.85615 4.86637 4.92723 4.97130 5.10753 5.11897 5.20270 5.32129 5.42335 5.50371 5.54470 5.66434 6.30422 6.36574 6.91238 7.36268 8.14512 8.35129 9.31736 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002807 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.344868 B = 9971.507854 C =11119.817565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.047 0.953 4 N -0.738 5.738 5 C -0.232 4.232 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.281 1.281 13 C -0.092 4.092 14 H 0.074 0.926 15 C -0.111 4.111 16 C 0.092 3.908 17 N -0.609 5.609 18 C 0.562 3.438 19 O -0.562 6.562 20 C -0.101 4.101 21 C -0.112 4.112 22 C 0.103 3.897 23 F -0.129 7.129 24 C -0.104 4.104 25 C -0.076 4.076 26 C -0.024 4.024 27 Cl -0.061 7.061 28 C 0.125 3.875 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.370 0.630 33 H 0.248 0.752 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.178 0.822 41 H 0.059 0.941 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 1.862 -29.905 29.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.207 1.207 13 C -0.112 4.112 14 H 0.092 0.908 15 C -0.149 4.149 16 C -0.029 4.029 17 N -0.341 5.341 18 C 0.350 3.650 19 O -0.441 6.441 20 C -0.105 4.105 21 C -0.131 4.131 22 C 0.083 3.917 23 F -0.108 7.108 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.052 4.052 27 Cl -0.032 7.032 28 C 0.003 3.997 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.201 0.799 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.180 0.820 39 H 0.203 0.797 40 H 0.195 0.805 41 H 0.078 0.922 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.021 1.841 -29.371 29.429 hybrid contribution 0.533 -0.165 1.786 1.871 sum 0.512 1.675 -27.585 27.641 Atomic orbital electron populations 1.22278 0.96848 1.00946 1.01167 1.20416 0.93262 0.94734 0.84504 0.93500 1.42662 1.78508 1.10235 1.06419 1.19562 1.34408 0.94114 0.88288 0.90548 1.25511 1.03337 0.96827 1.01422 1.69815 1.52869 1.10303 1.29285 0.85297 0.77969 0.77281 0.79765 1.20183 1.22638 1.20694 1.22484 0.92164 1.00619 0.95961 0.90770 1.22737 0.98802 1.02084 0.91314 1.22541 0.83240 1.01825 0.95326 1.48551 1.12005 1.65211 1.08335 1.18166 0.82005 0.77027 0.87772 1.90844 1.37325 1.52735 1.63224 1.19396 1.02899 0.95923 0.92296 1.21363 1.00227 1.00166 0.91375 1.17563 0.99006 0.88648 0.86449 1.91564 1.86010 1.64447 1.68760 1.21649 0.96481 0.91041 1.03121 1.21209 0.98484 1.01291 0.88434 1.21255 1.00157 0.91229 0.92524 1.98434 1.85594 1.55380 1.63743 1.22044 0.97051 1.00421 0.80200 0.94020 0.89876 0.94827 0.79907 0.94326 0.86956 0.88786 0.89687 0.88579 0.81977 0.79657 0.80478 0.92248 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.27 71.98 0.67 -4.09 16 2 C 0.18 6.47 2.43 44.99 0.11 6.58 16 3 H 0.05 1.72 8.01 -2.39 -0.02 1.70 16 4 N -0.74 -36.55 4.97 -322.95 -1.61 -38.16 16 5 C -0.23 -12.81 9.93 84.03 0.83 -11.97 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 8 N -0.97 -61.06 13.06 21.65 0.28 -60.77 16 9 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 C -0.09 -2.72 2.65 -9.40 -0.02 -2.75 16 14 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 15 C -0.11 -2.02 5.29 31.78 0.17 -1.85 16 16 C 0.09 1.63 5.66 86.73 0.49 2.12 16 17 N -0.61 -17.18 3.33 -815.28 -2.71 -19.89 16 18 C 0.56 17.65 6.94 86.76 0.60 18.25 16 19 O -0.56 -23.06 16.06 -3.91 -0.06 -23.12 16 20 C -0.10 -2.32 5.41 -20.07 -0.11 -2.42 16 21 C -0.11 -1.81 8.50 22.57 0.19 -1.62 16 22 C 0.10 1.31 7.29 22.33 0.16 1.47 16 23 F -0.13 -1.69 17.26 44.97 0.78 -0.92 16 24 C -0.10 -0.95 10.02 22.36 0.22 -0.72 16 25 C -0.08 -0.93 9.82 22.25 0.22 -0.71 16 26 C -0.02 -0.50 6.34 22.60 0.14 -0.36 16 27 Cl -0.06 -1.60 27.11 -2.72 -0.07 -1.67 16 28 C 0.13 4.36 6.21 86.85 0.54 4.90 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.85 7.28 -2.38 -0.02 1.83 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.37 20.16 7.80 -92.71 -0.72 19.43 16 33 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.11 1.48 8.11 -2.38 -0.02 1.46 16 35 H 0.09 1.51 8.04 -2.39 -0.02 1.49 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.20 6.02 -2.38 -0.01 1.18 16 38 H 0.16 2.15 6.00 -2.91 -0.02 2.13 16 39 H 0.19 0.39 8.06 -2.91 -0.02 0.36 16 40 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.06 2.19 7.98 -2.38 -0.02 2.17 16 42 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 Total: -1.00 -75.96 366.05 3.65 -72.31 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.33 Total: 20.35 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 4.68 Total: 2.69 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -4.03 Total: -118.82 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.78 Total: -0.92 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.67 kcal Total: -75.96 3.65 -72.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733537804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.903 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds