Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46686 * 2 1 4 4 N 1.46500 * 109.47219 * 239.99878 * 2 1 3 5 5 C 1.36932 * 119.99894 * 84.99705 * 4 2 1 6 6 H 1.07993 * 120.00317 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99647 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99977 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00096 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46897 * 90.00102 * 9 7 5 11 11 H 1.48496 * 109.47184 * 209.99980 * 9 7 5 12 12 H 1.48495 * 109.46953 * 330.00037 * 9 7 5 13 13 C 1.52996 * 109.47220 * 119.99318 * 2 1 3 14 14 H 1.09007 * 110.88383 * 59.96645 * 13 2 1 15 15 C 1.55155 * 111.00648 * 183.84376 * 13 2 1 16 16 C 1.54330 * 102.94235 * 153.61702 * 15 13 2 17 17 N 1.47027 * 107.26769 * 337.80886 * 16 15 13 18 18 C 1.34781 * 125.64334 * 178.90728 * 17 16 15 19 19 O 1.21562 * 119.99545 * 185.24225 * 18 17 16 20 20 C 1.47778 * 120.00085 * 5.23758 * 18 17 16 21 21 C 1.39608 * 120.14342 * 45.11279 * 20 18 17 22 22 C 1.38122 * 119.83851 * 180.29902 * 21 20 18 23 23 F 1.35102 * 119.93661 * 179.75114 * 22 21 20 24 24 C 1.38620 * 120.12697 * 359.72520 * 22 21 20 25 25 C 1.38239 * 120.29515 * 0.02562 * 24 22 21 26 26 C 1.38153 * 120.15739 * 0.02562 * 25 24 22 27 27 Cl 1.73604 * 120.06602 * 179.97438 * 26 25 24 28 28 C 1.47414 * 108.70558 * 359.16689 * 17 16 15 29 29 H 1.08993 * 109.46891 * 175.37098 * 1 2 3 30 30 H 1.08996 * 109.46779 * 295.37170 * 1 2 3 31 31 H 1.08998 * 109.47224 * 55.36906 * 1 2 3 32 32 H 0.97005 * 119.99349 * 264.99954 * 4 2 1 33 33 H 0.97002 * 119.99967 * 180.02562 * 8 7 5 34 34 H 1.09002 * 110.71640 * 35.26015 * 15 13 2 35 35 H 1.08995 * 110.87488 * 272.05090 * 15 13 2 36 36 H 1.09005 * 109.87776 * 218.39504 * 16 15 13 37 37 H 1.08998 * 110.00943 * 97.29833 * 16 15 13 38 38 H 1.08001 * 120.08036 * 0.02694 * 21 20 18 39 39 H 1.08008 * 119.85596 * 179.97438 * 24 22 21 40 40 H 1.08006 * 119.91979 * 179.97438 * 25 24 22 41 41 H 1.09002 * 110.36839 * 142.73806 * 28 17 16 42 42 H 1.08996 * 110.37031 * 265.06059 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.7375 -0.0055 -4.6429 9 14 3.0557 -2.4746 -3.4252 10 1 1.8584 -3.2930 -3.7439 11 1 4.1307 -2.7667 -4.4071 12 1 3.5313 -2.8047 -2.0578 13 6 2.0401 -0.7211 1.2493 14 1 1.6890 -1.7528 1.2730 15 6 3.5880 -0.6583 1.3347 16 6 3.8556 -0.7754 2.8502 17 7 2.6283 -0.3573 3.5436 18 6 2.4488 -0.3375 4.8792 19 8 1.3587 -0.0633 5.3419 20 6 3.5772 -0.6493 5.7812 21 6 4.8345 -0.0878 5.5510 22 6 5.8862 -0.3884 6.3944 23 9 7.1050 0.1499 6.1705 24 6 5.6935 -1.2409 7.4703 25 6 4.4496 -1.7958 7.7062 26 6 3.3895 -1.5042 6.8697 27 17 1.8285 -2.2030 7.1678 28 6 1.6247 0.0306 2.5359 29 1 -0.3633 -1.0243 -0.0829 30 1 -0.3633 0.4403 0.9285 31 1 -0.3633 0.5840 -0.8456 32 1 2.2491 -1.6318 -1.1525 33 1 3.0602 -0.4630 -5.4350 34 1 3.9572 0.2926 0.9504 35 1 4.0408 -1.4917 0.7977 36 1 4.6816 -0.1224 3.1322 37 1 4.0940 -1.8072 3.1081 38 1 4.9854 0.5765 4.7130 39 1 6.5191 -1.4733 8.1268 40 1 4.3063 -2.4596 8.5461 41 1 0.6292 -0.2803 2.8528 42 1 1.6515 1.1073 2.3688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733537807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -39.324926 kcal Electronic energy + Delta-G solvation = -26958.255379 eV Core-core repulsion = 22879.170534 eV Total energy + Delta-G solvation = -4079.084845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.42029 -40.73331 -39.10771 -37.77049 -36.78318 -35.44772 -32.78725 -31.94313 -30.81622 -30.57002 -29.73682 -27.73949 -25.41892 -24.01989 -23.26187 -22.63764 -21.45256 -20.13163 -19.90196 -18.18190 -17.64065 -17.35650 -17.16268 -16.65095 -16.16873 -16.03399 -15.56937 -14.92713 -14.55137 -14.37205 -14.04605 -13.88711 -13.62874 -13.53184 -13.29589 -13.00195 -12.89115 -12.72167 -12.50599 -12.28270 -12.03399 -11.94262 -11.68905 -11.59848 -11.33503 -11.04834 -10.85600 -10.62631 -10.53415 -10.31123 -10.15343 -9.96802 -9.76513 -9.61761 -9.10741 -8.97747 -8.76870 -7.31652 -5.80112 -3.15878 0.16713 0.42403 1.66585 2.30988 2.65341 2.97695 3.32835 3.36662 3.42612 3.61018 3.93737 4.10448 4.32951 4.53844 4.55385 4.61476 4.63174 4.89835 4.91806 5.09375 5.15288 5.28867 5.32937 5.40069 5.42672 5.47606 5.55803 5.58668 5.76318 5.79450 5.89290 6.02904 6.06925 6.08390 6.18611 6.30144 6.38634 6.45257 6.75377 6.97304 7.28112 7.86796 7.95854 8.38840 9.17060 9.89474 10.09102 11.38285 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002791 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.617184 B =10030.178779 C =10899.183896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.081 0.919 15 C -0.118 4.118 16 C 0.092 3.908 17 N -0.608 5.608 18 C 0.571 3.429 19 O -0.514 6.514 20 C -0.085 4.085 21 C -0.114 4.114 22 C 0.102 3.898 23 F -0.130 7.130 24 C -0.123 4.123 25 C -0.087 4.087 26 C -0.007 4.007 27 Cl -0.035 7.035 28 C 0.115 3.885 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.082 0.918 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -3.801 26.867 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.156 4.156 16 C -0.030 4.030 17 N -0.342 5.342 18 C 0.358 3.642 19 O -0.390 6.390 20 C -0.089 4.089 21 C -0.133 4.133 22 C 0.083 3.917 23 F -0.108 7.108 24 C -0.143 4.143 25 C -0.105 4.105 26 C -0.035 4.035 27 Cl -0.005 7.005 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.100 0.900 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.181 -3.501 27.011 27.725 hybrid contribution 0.569 -1.329 -0.181 1.457 sum 5.749 -4.830 26.830 27.861 Atomic orbital electron populations 1.22466 0.98643 1.01348 1.00358 1.20096 0.92032 0.95421 0.84339 0.92349 1.42732 1.79766 1.09420 1.06984 1.19045 1.36940 0.95593 0.85505 0.89202 1.24661 1.01479 0.97395 0.95563 1.69697 1.52688 1.35543 1.00268 0.86569 0.78120 0.86946 0.76949 1.21185 1.21833 1.20357 1.22677 0.95188 1.00421 0.94404 0.90089 1.22618 0.96375 1.04386 0.92248 1.22358 0.86813 0.99932 0.93943 1.48430 1.16357 1.64942 1.04444 1.17547 0.87363 0.78424 0.80878 1.90850 1.24944 1.48013 1.75160 1.19619 0.94050 0.98999 0.96250 1.21372 0.90415 1.01128 1.00408 1.17538 0.80859 0.96808 0.96542 1.91563 1.40766 1.84206 1.94260 1.21285 0.98502 0.97187 0.97284 1.20909 0.90396 0.99953 0.99266 1.20984 0.88952 0.97681 0.95876 1.98430 1.24862 1.82099 1.95144 1.22314 0.92283 0.99626 0.86433 0.93407 0.93997 0.92337 0.80695 0.93058 0.89647 0.89690 0.91285 0.91383 0.82887 0.83228 0.83152 0.89989 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.39 37.16 0.35 -2.42 16 2 C 0.19 3.30 2.40 -67.93 -0.16 3.14 16 3 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.75 -16.27 4.68 -53.43 -0.25 -16.52 16 5 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 6 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 9 Si 0.88 21.35 27.74 -169.99 -4.71 16.64 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 13 C -0.11 -1.49 2.62 -88.59 -0.23 -1.72 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.51 6.19 -24.89 -0.15 -1.66 16 16 C 0.09 0.97 5.92 -3.06 -0.02 0.95 16 17 N -0.61 -7.49 3.33 -171.79 -0.57 -8.06 16 18 C 0.57 7.55 6.99 -12.36 -0.09 7.47 16 19 O -0.51 -8.30 15.83 5.31 0.08 -8.22 16 20 C -0.09 -0.91 5.38 -104.95 -0.56 -1.48 16 21 C -0.11 -1.02 8.41 -39.11 -0.33 -1.34 16 22 C 0.10 0.82 7.29 -39.48 -0.29 0.53 16 23 F -0.13 -1.13 17.26 2.25 0.04 -1.09 16 24 C -0.12 -0.78 10.02 -39.44 -0.40 -1.17 16 25 C -0.09 -0.59 9.81 -39.61 -0.39 -0.98 16 26 C -0.01 -0.07 6.34 -39.07 -0.25 -0.32 16 27 Cl -0.03 -0.38 27.01 -51.86 -1.40 -1.78 16 28 C 0.12 1.49 5.44 -2.65 -0.01 1.48 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.58 7.15 -51.93 -0.37 0.21 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.36 7.77 5.66 -40.82 -0.23 7.54 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.61 5.76 -51.93 -0.30 0.31 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.15 1.23 6.19 -52.49 -0.33 0.91 16 39 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.08 1.10 7.80 -51.93 -0.41 0.70 16 42 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -31.86 362.56 -8.80 -40.65 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.44 Total: 4.87 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.78 Total: -4.08 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.05 Total: -52.46 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.40 Total: -1.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.86 -8.80 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733537807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.329 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds