Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46686 * 2 1 4 4 N 1.46500 * 109.47219 * 239.99878 * 2 1 3 5 5 C 1.36932 * 119.99894 * 84.99705 * 4 2 1 6 6 H 1.07993 * 120.00317 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99647 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99977 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00096 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46897 * 90.00102 * 9 7 5 11 11 H 1.48496 * 109.47184 * 209.99980 * 9 7 5 12 12 H 1.48495 * 109.46953 * 330.00037 * 9 7 5 13 13 C 1.52996 * 109.47220 * 119.99318 * 2 1 3 14 14 H 1.09007 * 110.88383 * 59.96645 * 13 2 1 15 15 C 1.55155 * 111.00648 * 183.84376 * 13 2 1 16 16 C 1.54330 * 102.94235 * 153.61702 * 15 13 2 17 17 N 1.47027 * 107.26769 * 337.80886 * 16 15 13 18 18 C 1.34781 * 125.64334 * 178.90728 * 17 16 15 19 19 O 1.21562 * 119.99545 * 185.24225 * 18 17 16 20 20 C 1.47778 * 120.00085 * 5.23758 * 18 17 16 21 21 C 1.39608 * 120.14342 * 45.11279 * 20 18 17 22 22 C 1.38122 * 119.83851 * 180.29902 * 21 20 18 23 23 F 1.35102 * 119.93661 * 179.75114 * 22 21 20 24 24 C 1.38620 * 120.12697 * 359.72520 * 22 21 20 25 25 C 1.38239 * 120.29515 * 0.02562 * 24 22 21 26 26 C 1.38153 * 120.15739 * 0.02562 * 25 24 22 27 27 Cl 1.73604 * 120.06602 * 179.97438 * 26 25 24 28 28 C 1.47414 * 108.70558 * 359.16689 * 17 16 15 29 29 H 1.08993 * 109.46891 * 175.37098 * 1 2 3 30 30 H 1.08996 * 109.46779 * 295.37170 * 1 2 3 31 31 H 1.08998 * 109.47224 * 55.36906 * 1 2 3 32 32 H 0.97005 * 119.99349 * 264.99954 * 4 2 1 33 33 H 0.97002 * 119.99967 * 180.02562 * 8 7 5 34 34 H 1.09002 * 110.71640 * 35.26015 * 15 13 2 35 35 H 1.08995 * 110.87488 * 272.05090 * 15 13 2 36 36 H 1.09005 * 109.87776 * 218.39504 * 16 15 13 37 37 H 1.08998 * 110.00943 * 97.29833 * 16 15 13 38 38 H 1.08001 * 120.08036 * 0.02694 * 21 20 18 39 39 H 1.08008 * 119.85596 * 179.97438 * 24 22 21 40 40 H 1.08006 * 119.91979 * 179.97438 * 25 24 22 41 41 H 1.09002 * 110.36839 * 142.73806 * 28 17 16 42 42 H 1.08996 * 110.37031 * 265.06059 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.7375 -0.0055 -4.6429 9 14 3.0557 -2.4746 -3.4252 10 1 1.8584 -3.2930 -3.7439 11 1 4.1307 -2.7667 -4.4071 12 1 3.5313 -2.8047 -2.0578 13 6 2.0401 -0.7211 1.2493 14 1 1.6890 -1.7528 1.2730 15 6 3.5880 -0.6583 1.3347 16 6 3.8556 -0.7754 2.8502 17 7 2.6283 -0.3573 3.5436 18 6 2.4488 -0.3375 4.8792 19 8 1.3587 -0.0633 5.3419 20 6 3.5772 -0.6493 5.7812 21 6 4.8345 -0.0878 5.5510 22 6 5.8862 -0.3884 6.3944 23 9 7.1050 0.1499 6.1705 24 6 5.6935 -1.2409 7.4703 25 6 4.4496 -1.7958 7.7062 26 6 3.3895 -1.5042 6.8697 27 17 1.8285 -2.2030 7.1678 28 6 1.6247 0.0306 2.5359 29 1 -0.3633 -1.0243 -0.0829 30 1 -0.3633 0.4403 0.9285 31 1 -0.3633 0.5840 -0.8456 32 1 2.2491 -1.6318 -1.1525 33 1 3.0602 -0.4630 -5.4350 34 1 3.9572 0.2926 0.9504 35 1 4.0408 -1.4917 0.7977 36 1 4.6816 -0.1224 3.1322 37 1 4.0940 -1.8072 3.1081 38 1 4.9854 0.5765 4.7130 39 1 6.5191 -1.4733 8.1268 40 1 4.3063 -2.4596 8.5461 41 1 0.6292 -0.2803 2.8528 42 1 1.6515 1.1073 2.3688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733537807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -58.117214 kcal Electronic energy + Delta-G solvation = -26959.070274 eV Core-core repulsion = 22879.170534 eV Total energy + Delta-G solvation = -4079.899740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.04259 -41.63484 -39.95156 -38.84900 -37.52417 -36.92639 -34.36425 -33.06001 -31.85113 -31.40114 -31.15232 -28.95047 -26.50349 -25.42251 -24.07376 -23.61625 -22.75039 -21.34423 -20.97165 -19.59153 -18.90502 -18.18327 -17.79563 -17.47201 -17.24427 -16.73830 -16.53088 -16.40979 -15.75823 -15.37619 -15.14978 -14.96929 -14.72411 -14.53832 -14.35667 -14.19782 -13.96703 -13.90905 -13.70987 -13.49071 -13.38453 -12.99192 -12.83895 -12.70632 -12.41640 -12.37627 -12.12246 -11.96717 -11.91716 -11.71419 -11.67931 -11.40501 -11.12268 -10.95053 -10.40098 -9.79183 -9.72476 -9.28574 -7.97599 -5.30355 -0.49567 -0.17751 0.96322 1.40330 1.44309 1.44501 1.51482 1.75449 2.27413 2.52556 2.94283 3.20721 3.34155 3.39644 3.51191 3.59655 3.79736 3.80845 3.94063 4.03685 4.23960 4.24543 4.33715 4.45749 4.52366 4.56059 4.65202 4.69144 4.75902 4.84260 4.85203 4.89663 4.95604 5.01720 5.12452 5.13985 5.28245 5.35807 5.48901 5.57515 5.82786 6.26231 6.32063 6.89297 7.13174 7.89029 8.08577 9.24245 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002791 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.617184 B =10030.178779 C =10899.183896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.187 3.813 3 H 0.049 0.951 4 N -0.746 5.746 5 C -0.220 4.220 6 H 0.056 0.944 7 C -0.066 4.066 8 N -0.988 5.988 9 Si 0.952 3.048 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.243 1.243 13 C -0.097 4.097 14 H 0.086 0.914 15 C -0.117 4.117 16 C 0.098 3.902 17 N -0.608 5.608 18 C 0.570 3.430 19 O -0.552 6.552 20 C -0.104 4.104 21 C -0.114 4.114 22 C 0.097 3.903 23 F -0.133 7.133 24 C -0.105 4.105 25 C -0.077 4.077 26 C -0.019 4.019 27 Cl -0.053 7.053 28 C 0.120 3.880 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.365 0.635 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.179 0.821 41 H 0.077 0.923 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.548 -5.621 29.841 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 H 0.067 0.933 4 N -0.389 5.389 5 C -0.351 4.351 6 H 0.074 0.926 7 C -0.257 4.257 8 N -0.639 5.639 9 Si 0.780 3.220 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.167 1.167 13 C -0.117 4.117 14 H 0.104 0.896 15 C -0.155 4.155 16 C -0.023 4.023 17 N -0.341 5.341 18 C 0.358 3.642 19 O -0.430 6.430 20 C -0.108 4.108 21 C -0.133 4.133 22 C 0.078 3.922 23 F -0.112 7.112 24 C -0.124 4.124 25 C -0.095 4.095 26 C -0.047 4.047 27 Cl -0.024 7.024 28 C -0.003 4.003 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.199 0.801 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.196 0.804 41 H 0.095 0.905 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.865 -5.326 30.047 31.278 hybrid contribution 0.047 -0.645 -1.029 1.216 sum 6.912 -5.971 29.017 30.421 Atomic orbital electron populations 1.22357 0.97750 1.01275 1.00760 1.20253 0.92516 0.95064 0.84272 0.93307 1.42691 1.79881 1.09583 1.06762 1.18977 1.34555 0.94344 0.87213 0.92645 1.25462 1.02669 1.02387 0.95184 1.69887 1.55084 1.37712 1.01221 0.85453 0.77393 0.80834 0.78358 1.21201 1.22752 1.16743 1.22462 0.96219 1.00128 0.92892 0.89602 1.22585 0.95143 1.03906 0.93905 1.22397 0.86604 1.01305 0.92029 1.48453 1.16634 1.64645 1.04345 1.17942 0.87620 0.77547 0.81085 1.90823 1.26639 1.49784 1.75774 1.19432 0.93811 1.00849 0.96713 1.21361 0.90028 1.01007 1.00912 1.17652 0.80422 0.97169 0.96976 1.91562 1.40885 1.84362 1.94347 1.21648 0.99063 0.95199 0.96468 1.21222 0.89525 0.99642 0.99142 1.21209 0.88951 0.98105 0.96446 1.98423 1.26390 1.82361 1.95207 1.22176 0.92410 0.99547 0.86140 0.93182 0.91217 0.94818 0.80127 0.93554 0.90534 0.89731 0.89243 0.89995 0.82479 0.79935 0.80377 0.90468 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 9.39 71.98 0.68 -4.55 16 2 C 0.19 6.36 2.40 44.99 0.11 6.47 16 3 H 0.05 1.76 8.08 -2.39 -0.02 1.75 16 4 N -0.75 -31.98 4.68 -322.94 -1.51 -33.49 16 5 C -0.22 -11.94 10.41 84.03 0.87 -11.07 16 6 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 7 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 8 N -0.99 -62.49 13.97 21.65 0.30 -62.19 16 9 Si 0.95 43.92 27.74 68.60 1.90 45.82 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.24 -9.73 6.52 99.48 0.65 -9.08 16 13 C -0.10 -2.55 2.62 -9.48 -0.02 -2.57 16 14 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 15 C -0.12 -2.76 6.19 31.78 0.20 -2.56 16 16 C 0.10 1.84 5.92 86.73 0.51 2.35 16 17 N -0.61 -14.03 3.33 -815.69 -2.71 -16.74 16 18 C 0.57 14.47 6.99 86.77 0.61 15.08 16 19 O -0.55 -17.70 15.83 -3.91 -0.06 -17.76 16 20 C -0.10 -2.05 5.38 -20.08 -0.11 -2.16 16 21 C -0.11 -1.76 8.41 22.57 0.19 -1.57 16 22 C 0.10 1.25 7.29 22.33 0.16 1.42 16 23 F -0.13 -1.92 17.26 44.97 0.78 -1.15 16 24 C -0.11 -0.89 10.02 22.36 0.22 -0.66 16 25 C -0.08 -0.78 9.81 22.25 0.22 -0.56 16 26 C -0.02 -0.34 6.34 22.60 0.14 -0.19 16 27 Cl -0.05 -1.10 27.01 -2.72 -0.07 -1.18 16 28 C 0.12 2.95 5.44 86.78 0.47 3.42 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.85 7.15 -2.39 -0.02 1.84 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.37 14.99 5.66 -92.70 -0.52 14.46 16 33 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.08 1.94 8.04 -2.39 -0.02 1.93 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 1.34 5.76 -2.38 -0.01 1.33 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.16 2.19 6.19 -2.91 -0.02 2.17 16 39 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 40 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 41 H 0.08 2.00 7.80 -2.39 -0.02 1.98 16 42 H 0.08 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -71.25 362.56 3.81 -67.44 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.47 Total: 19.73 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.72 Total: -0.48 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -3.92 Total: -112.42 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.06 Total: -17.76 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.90 Total: 45.82 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.18 kcal Total: -71.25 3.81 -67.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733537807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.319 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds