Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47108 * 2 1 4 4 N 1.46498 * 109.47043 * 240.00101 * 2 1 3 5 5 C 1.36937 * 120.00060 * 85.27560 * 4 2 1 6 6 H 1.07993 * 119.99809 * 359.72213 * 5 4 2 7 7 C 1.38813 * 119.99706 * 179.72351 * 5 4 2 8 8 N 1.31610 * 120.00516 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99639 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46825 * 59.99850 * 9 7 5 11 11 H 1.48495 * 109.47032 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46990 * 299.99954 * 9 7 5 13 13 C 1.53003 * 109.46961 * 119.99763 * 2 1 3 14 14 H 1.09000 * 110.88478 * 60.70333 * 13 2 1 15 15 C 1.55152 * 111.00775 * 296.82168 * 13 2 1 16 16 C 1.54365 * 102.92238 * 206.45605 * 15 13 2 17 17 N 1.47016 * 107.28857 * 22.13600 * 16 15 13 18 18 C 1.34778 * 125.65022 * 181.13011 * 17 16 15 19 19 O 1.21562 * 120.00113 * 174.72649 * 18 17 16 20 20 C 1.47774 * 120.00025 * 354.72361 * 18 17 16 21 21 C 1.39608 * 120.14135 * 314.92651 * 20 18 17 22 22 C 1.38127 * 119.83983 * 179.74009 * 21 20 18 23 23 F 1.35095 * 119.93671 * 180.23051 * 22 21 20 24 24 C 1.38628 * 120.12473 * 0.51496 * 22 21 20 25 25 C 1.38237 * 120.29377 * 359.75760 * 24 22 21 26 26 C 1.38151 * 120.16160 * 359.97438 * 25 24 22 27 27 Cl 1.73595 * 120.06928 * 180.02562 * 26 25 24 28 28 C 1.47423 * 108.70610 * 1.09581 * 17 16 15 29 29 H 1.08998 * 109.47571 * 299.99894 * 1 2 3 30 30 H 1.09000 * 109.47150 * 60.00438 * 1 2 3 31 31 H 1.09006 * 109.46750 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99907 * 264.99454 * 4 2 1 33 33 H 0.97000 * 120.00657 * 180.02562 * 8 7 5 34 34 H 1.09005 * 110.71863 * 324.79286 * 15 13 2 35 35 H 1.09004 * 110.71809 * 88.05890 * 15 13 2 36 36 H 1.09002 * 109.84638 * 262.73273 * 16 15 13 37 37 H 1.08997 * 110.03352 * 141.64770 * 16 15 13 38 38 H 1.07995 * 120.08474 * 359.97438 * 21 20 18 39 39 H 1.07996 * 119.85114 * 179.74566 * 24 22 21 40 40 H 1.07997 * 119.92128 * 180.02562 * 25 24 22 41 41 H 1.08999 * 110.37220 * 217.03186 * 28 17 16 42 42 H 1.09006 * 110.46314 * 94.75333 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1545 -0.0061 -2.3743 6 1 1.8976 1.0417 -2.4228 7 6 2.6226 -0.6591 -3.5063 8 7 2.9361 -1.9360 -3.4471 9 14 2.8076 0.2745 -5.1137 10 1 3.7614 1.3973 -4.9269 11 1 3.3224 -0.6424 -6.1622 12 1 1.4868 0.8109 -5.5294 13 6 2.0400 -0.7212 1.2493 14 1 1.6997 -1.7566 1.2664 15 6 1.6092 0.0271 2.5383 16 6 2.7019 -0.3744 3.5521 17 7 3.8819 -0.7910 2.7805 18 6 5.0433 -1.2356 3.3000 19 8 5.9210 -1.6444 2.5649 20 6 5.2498 -1.2262 4.7632 21 6 4.8931 -0.1048 5.5144 22 6 5.0838 -0.1049 6.8824 23 9 4.7350 0.9775 7.6118 24 6 5.6381 -1.2111 7.5076 25 6 5.9985 -2.3222 6.7683 26 6 5.8079 -2.3372 5.4001 27 17 6.2608 -3.7340 4.4741 28 6 3.5842 -0.6426 1.3443 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 3.2636 -2.3922 -4.2380 34 1 1.6105 1.1052 2.3771 35 1 0.6288 -0.3128 2.8722 36 1 2.3498 -1.2027 4.1670 37 1 2.9544 0.4760 4.1853 38 1 4.4654 0.7591 5.0276 39 1 5.7890 -1.2047 8.5769 40 1 6.4294 -3.1808 7.2616 41 1 4.0409 -1.4532 0.7764 42 1 3.9381 0.3216 0.9793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733537811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -42.311308 kcal Electronic energy + Delta-G solvation = -26976.275721 eV Core-core repulsion = 22897.061377 eV Total energy + Delta-G solvation = -4079.214344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.38265 -40.58564 -38.98177 -37.60558 -36.66264 -35.23195 -32.73353 -31.89615 -30.71732 -30.42554 -28.66192 -28.14377 -25.07095 -23.97273 -23.29429 -22.72497 -21.54927 -19.95985 -19.67331 -18.05005 -17.38746 -17.08924 -17.00631 -16.51783 -16.09731 -15.87603 -15.45761 -14.79049 -14.49594 -14.26336 -14.12739 -13.71661 -13.60463 -13.49173 -13.17058 -13.02563 -12.69008 -12.61455 -12.27771 -12.08185 -11.91991 -11.68814 -11.52788 -11.37520 -11.19652 -10.87189 -10.77297 -10.60308 -10.55616 -10.23570 -10.01634 -9.85211 -9.67878 -9.61330 -9.02228 -8.89920 -8.57037 -6.95606 -5.74266 -3.03623 0.25795 0.49666 1.78694 2.45614 2.82282 3.09060 3.45503 3.50043 3.51205 3.68215 4.03294 4.18650 4.40702 4.57858 4.61509 4.63574 4.80376 4.92818 5.02447 5.17765 5.29827 5.34567 5.41916 5.47298 5.55859 5.57320 5.63570 5.86762 5.87218 5.91200 6.02087 6.11790 6.14716 6.27066 6.34042 6.38475 6.53541 6.62034 6.84235 7.06282 7.48126 7.70938 8.06996 8.43571 9.54941 10.11526 10.45868 11.48089 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002797 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.682446 B =10009.836493 C =11047.308250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.124 4.124 16 C 0.095 3.905 17 N -0.610 5.610 18 C 0.567 3.433 19 O -0.507 6.507 20 C -0.082 4.082 21 C -0.115 4.115 22 C 0.100 3.900 23 F -0.131 7.131 24 C -0.125 4.125 25 C -0.087 4.087 26 C -0.007 4.007 27 Cl -0.031 7.031 28 C 0.120 3.880 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.087 0.913 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 1.569 26.201 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.162 4.162 16 C -0.028 4.028 17 N -0.344 5.344 18 C 0.353 3.647 19 O -0.382 6.382 20 C -0.087 4.087 21 C -0.134 4.134 22 C 0.080 3.920 23 F -0.110 7.110 24 C -0.144 4.144 25 C -0.105 4.105 26 C -0.035 4.035 27 Cl -0.002 7.002 28 C -0.001 4.001 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.106 0.894 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.261 1.345 25.596 25.730 hybrid contribution 0.072 0.282 -0.786 0.838 sum 2.332 1.627 24.810 24.972 Atomic orbital electron populations 1.22442 0.99071 1.00900 0.99983 1.20147 0.91936 0.95125 0.85322 0.93305 1.42412 1.78163 1.10656 1.05328 1.19144 1.36734 0.93792 0.87440 0.91293 1.24726 1.02051 0.95939 0.98031 1.69639 1.50494 1.08687 1.29079 0.86307 0.77713 0.78665 0.83718 1.21283 1.21746 1.21350 1.22681 0.93759 1.00636 0.95090 0.89984 1.22694 0.97544 1.01382 0.94593 1.22247 0.86016 0.99450 0.95061 1.48472 1.12710 1.64077 1.09160 1.17545 0.81998 0.78597 0.86528 1.90889 1.41978 1.45060 1.60224 1.19699 1.00841 0.93696 0.94426 1.21346 1.00746 0.99241 0.92088 1.17528 1.00476 0.84810 0.89145 1.91547 1.89776 1.52598 1.77051 1.21258 0.99527 0.92082 1.01545 1.20907 0.99441 0.99051 0.91131 1.21023 1.00005 0.90132 0.92387 1.98442 1.90387 1.38306 1.73071 1.22329 0.95712 1.03180 0.78879 0.94395 0.92759 0.93509 0.78238 0.93444 0.90211 0.89905 0.91489 0.91525 0.83006 0.83325 0.83188 0.89441 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.31 37.16 0.35 -2.37 16 2 C 0.19 3.37 2.40 -67.93 -0.16 3.21 16 3 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 4 N -0.72 -17.38 4.90 -53.43 -0.26 -17.64 16 5 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 9 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 C -0.10 -1.52 2.64 -88.47 -0.23 -1.76 16 14 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 15 C -0.12 -1.34 5.44 -24.88 -0.14 -1.47 16 16 C 0.10 0.99 5.93 -3.05 -0.02 0.97 16 17 N -0.61 -8.61 3.33 -171.63 -0.57 -9.18 16 18 C 0.57 8.67 6.99 -12.36 -0.09 8.58 16 19 O -0.51 -9.72 15.82 5.31 0.08 -9.63 16 20 C -0.08 -0.98 5.38 -104.95 -0.56 -1.55 16 21 C -0.11 -1.09 8.40 -39.11 -0.33 -1.42 16 22 C 0.10 0.83 7.29 -39.48 -0.29 0.54 16 23 F -0.13 -1.14 17.26 2.25 0.04 -1.10 16 24 C -0.13 -0.84 10.02 -39.44 -0.40 -1.24 16 25 C -0.09 -0.66 9.81 -39.61 -0.39 -1.05 16 26 C -0.01 -0.08 6.34 -39.07 -0.25 -0.33 16 27 Cl -0.03 -0.40 27.00 -51.86 -1.40 -1.80 16 28 C 0.12 1.99 6.19 -2.53 -0.02 1.98 16 29 H 0.04 0.50 7.38 -51.93 -0.38 0.12 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 35 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.56 5.75 -51.93 -0.30 0.26 16 38 H 0.15 1.28 6.19 -52.49 -0.33 0.95 16 39 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.09 1.74 7.99 -51.93 -0.41 1.32 16 42 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -32.18 365.99 -9.15 -41.34 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.50 Total: 5.46 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.76 Total: -2.95 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.11 Total: -54.20 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.40 Total: -1.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.18 -9.15 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733537811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.976 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds