Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47156 * 179.97438 * 7 5 4 9 9 C 1.38466 * 120.02398 * 89.99399 * 8 7 5 10 10 F 1.35099 * 120.01637 * 0.02562 * 9 8 7 11 11 C 1.38445 * 119.96495 * 179.97438 * 9 8 7 12 12 C 1.38226 * 119.99966 * 359.97438 * 11 9 8 13 13 C 1.38203 * 120.03820 * 0.02562 * 12 11 9 14 14 C 1.38297 * 120.01882 * 269.72291 * 8 7 5 15 15 Cl 1.73599 * 119.99723 * 359.97438 * 14 8 7 16 16 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 17 17 C 1.53486 * 114.20850 * 60.00280 * 16 2 1 18 18 N 1.47064 * 87.98715 * 87.51930 * 17 16 2 19 19 C 1.36943 * 136.05552 * 207.08901 * 18 17 16 20 20 H 1.07995 * 119.99927 * 7.55397 * 19 18 17 21 21 C 1.38813 * 119.99686 * 187.55568 * 19 18 17 22 22 N 1.31616 * 120.00311 * 174.37868 * 21 19 18 23 23 Si 1.86810 * 119.99981 * 354.38142 * 21 19 18 24 24 H 1.48499 * 109.46858 * 174.94995 * 23 21 19 25 25 H 1.48498 * 109.46907 * 294.94478 * 23 21 19 26 26 H 1.48495 * 109.47036 * 54.94533 * 23 21 19 27 27 C 1.47066 * 87.88390 * 27.34185 * 18 17 16 28 28 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 29 29 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 32 32 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 33 33 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 34 34 H 1.07997 * 119.99985 * 179.97438 * 11 9 8 35 35 H 1.07999 * 119.97916 * 180.02562 * 12 11 9 36 36 H 1.08003 * 119.98121 * 179.97438 * 13 12 11 37 37 H 1.08998 * 113.41116 * 286.79710 * 16 2 1 38 38 H 1.09003 * 113.46770 * 332.73878 * 17 16 2 39 39 H 1.09004 * 113.52153 * 202.31032 * 17 16 2 40 40 H 0.96998 * 119.99357 * 354.81763 * 22 21 19 41 41 H 1.08996 * 113.46631 * 87.44126 * 27 18 17 42 42 H 1.09001 * 113.46561 * 217.88042 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 6 2.7011 0.2397 4.7409 9 6 1.5988 0.3955 5.5642 10 9 0.4768 -0.3210 5.3341 11 6 1.6473 1.2851 6.6239 12 6 2.7960 2.0168 6.8599 13 6 3.8963 1.8614 6.0382 14 6 3.8512 0.9693 4.9813 15 17 5.2365 0.7691 3.9544 16 6 2.0399 -0.7213 -1.2493 17 6 1.5898 -0.0846 -2.5714 18 7 2.7723 0.7864 -2.4946 19 6 3.1104 2.0324 -2.9512 20 1 2.3637 2.6574 -3.4180 21 6 4.4131 2.4918 -2.8140 22 7 4.7655 3.6412 -3.3498 23 14 5.6662 1.4788 -1.8688 24 1 7.0008 2.1220 -1.9706 25 1 5.2629 1.3987 -0.4418 26 1 5.7308 0.1107 -2.4425 27 6 3.4340 -0.2723 -1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6318 1.1526 32 1 1.9776 -1.5509 3.8325 33 1 3.6492 -1.1205 3.3978 34 1 0.7877 1.4074 7.2661 35 1 2.8337 2.7104 7.6869 36 1 4.7933 2.4339 6.2232 37 1 1.9117 -1.8029 -1.2076 38 1 0.6466 0.4562 -2.4938 39 1 1.6122 -0.7736 -3.4158 40 1 4.1374 4.1309 -3.9035 41 1 3.9431 -1.0113 -2.3358 42 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734128161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -2.006569 kcal Electronic energy + Delta-G solvation = -27524.217377 eV Core-core repulsion = 23446.750777 eV Total energy + Delta-G solvation = -4077.466599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.18914 -40.17643 -39.32443 -38.36569 -36.64054 -34.78762 -33.26337 -32.34356 -30.70532 -30.56207 -27.90058 -27.70078 -25.35499 -23.82043 -23.14387 -22.50914 -21.32579 -20.26900 -19.01234 -18.01519 -17.43627 -17.12017 -16.99147 -16.52317 -15.92049 -15.77233 -15.12610 -15.02870 -14.88218 -14.41197 -13.91131 -13.77633 -13.71987 -13.53330 -13.18486 -13.16145 -13.05787 -12.68765 -12.19296 -12.05813 -11.76931 -11.67726 -11.56326 -11.44242 -11.24093 -11.04069 -10.94663 -10.56895 -10.26936 -10.19490 -9.76391 -9.17827 -9.10404 -9.04083 -8.95516 -8.88272 -8.79291 -7.11120 -6.23585 -3.17356 0.71213 0.77003 1.85421 2.78214 3.03148 3.42030 3.43107 3.48889 3.67599 3.94994 4.18236 4.43394 4.54591 4.64521 4.79274 4.80922 4.89212 4.99328 5.06758 5.11743 5.15571 5.30712 5.50063 5.57870 5.64162 5.71264 5.73826 5.79928 5.87874 5.89786 5.96492 6.09418 6.22655 6.30025 6.33640 6.41208 6.47974 6.54111 6.69530 6.94154 7.17134 7.65978 8.29494 8.39212 9.03356 9.55838 10.42016 11.26479 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003881 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.015408 B = 7212.036198 C = 8484.249766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.102 0.898 4 N -0.722 5.722 5 C 0.517 3.483 6 O -0.525 6.525 7 C -0.111 4.111 8 C -0.090 4.090 9 C 0.124 3.876 10 F -0.131 7.131 11 C -0.150 4.150 12 C -0.080 4.080 13 C -0.119 4.119 14 C 0.003 3.997 15 Cl -0.047 7.047 16 C -0.141 4.141 17 C 0.130 3.870 18 N -0.626 5.626 19 C -0.302 4.302 20 H 0.083 0.917 21 C -0.023 4.023 22 N -0.935 5.935 23 Si 1.067 2.933 24 H -0.296 1.296 25 H -0.291 1.291 26 H -0.288 1.288 27 C 0.100 3.900 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.396 0.604 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.260 0.740 41 H 0.045 0.955 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 -12.507 21.828 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.063 3.937 3 H 0.120 0.880 4 N -0.373 5.373 5 C 0.302 3.698 6 O -0.400 6.400 7 C -0.150 4.150 8 C -0.092 4.092 9 C 0.104 3.896 10 F -0.109 7.109 11 C -0.169 4.169 12 C -0.098 4.098 13 C -0.138 4.138 14 C -0.024 4.024 15 Cl -0.018 7.018 16 C -0.161 4.161 17 C 0.003 3.997 18 N -0.355 5.355 19 C -0.428 4.428 20 H 0.100 0.900 21 C -0.222 4.222 22 N -0.578 5.578 23 Si 0.900 3.100 24 H -0.223 1.223 25 H -0.220 1.220 26 H -0.216 1.216 27 C -0.026 4.026 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.230 0.770 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.734 -11.417 22.199 25.241 hybrid contribution -1.521 -0.687 -0.944 1.917 sum -5.255 -12.104 21.255 25.018 Atomic orbital electron populations 1.22101 0.95465 1.01385 1.02474 1.20639 0.93353 0.98171 0.81543 0.87966 1.46035 1.67682 1.13778 1.09806 1.20162 0.78061 0.87426 0.84129 1.90752 1.49045 1.15499 1.84722 1.20682 1.05184 0.97914 0.91266 1.19093 0.92484 1.00256 0.97340 1.17244 0.82352 0.93834 0.96142 1.91508 1.49204 1.76027 1.94205 1.21195 1.00314 0.97370 0.98033 1.20947 0.91552 0.98241 0.99060 1.21114 1.00294 0.98109 0.94290 1.20576 0.89313 0.98327 0.94171 1.98416 1.40313 1.96242 1.66793 1.23200 0.99425 0.98211 0.95249 1.22358 0.92717 0.91896 0.92715 1.46012 1.13203 1.12613 1.63672 1.20144 0.96381 0.88630 1.37648 0.89964 1.25640 0.96037 0.99138 1.01354 1.70907 1.37601 1.15104 1.34167 0.83769 0.75974 0.74527 0.75777 1.22331 1.21962 1.21552 1.22815 0.94084 0.91242 0.94445 0.92568 0.91219 0.92945 0.77030 0.87341 0.86962 0.84087 0.83989 0.84081 0.90487 0.93274 0.94282 0.92965 0.93774 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.29 37.16 0.35 -1.94 16 2 C 0.17 2.80 2.43 -67.93 -0.16 2.64 16 3 H 0.10 2.26 7.36 -51.93 -0.38 1.88 16 4 N -0.72 -10.08 5.08 -53.80 -0.27 -10.35 16 5 C 0.52 7.98 7.79 -10.99 -0.09 7.89 16 6 O -0.52 -10.50 15.70 5.56 0.09 -10.41 16 7 C -0.11 -1.27 5.26 -29.04 -0.15 -1.42 16 8 C -0.09 -1.11 4.38 -104.52 -0.46 -1.57 16 9 C 0.12 1.45 7.24 -39.42 -0.29 1.16 16 10 F -0.13 -1.58 16.48 2.25 0.04 -1.54 16 11 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 12 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 13 C -0.12 -1.18 9.83 -39.54 -0.39 -1.57 16 14 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 15 Cl -0.05 -0.61 27.29 -51.86 -1.42 -2.03 16 16 C -0.14 -2.33 3.73 -89.97 -0.34 -2.67 16 17 C 0.13 2.51 8.08 -8.52 -0.07 2.44 16 18 N -0.63 -15.55 3.49 -184.63 -0.64 -16.20 16 19 C -0.30 -8.93 11.08 -15.06 -0.17 -9.10 16 20 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 21 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 22 N -0.94 -30.46 13.70 55.49 0.76 -29.70 16 23 Si 1.07 27.97 25.16 -169.99 -4.28 23.70 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 25 H -0.29 -7.44 6.51 56.52 0.37 -7.07 16 26 H -0.29 -6.96 6.20 56.52 0.35 -6.61 16 27 C 0.10 2.10 5.24 -8.38 -0.04 2.06 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.04 6.50 -51.93 -0.34 0.71 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 32 H 0.11 0.96 7.64 -51.93 -0.40 0.57 16 33 H 0.11 1.12 6.89 -51.93 -0.36 0.77 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16 41 H 0.04 0.91 7.66 -51.93 -0.40 0.51 16 42 H 0.05 1.19 4.71 -51.93 -0.24 0.95 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -36.70 362.26 -8.63 -45.33 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.42 Total: 1.69 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -2.94 Total: -5.94 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.16 Total: -56.25 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.28 Total: 23.70 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.70 -8.63 -45.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734128161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.324 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds