Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00399 * 2 1 4 4 O 1.21565 * 120.00406 * 175.70417 * 3 2 1 5 5 C 1.47772 * 119.99745 * 355.69962 * 3 2 1 6 6 C 1.39606 * 120.14453 * 49.08223 * 5 3 2 7 7 C 1.38124 * 119.84074 * 179.76811 * 6 5 3 8 8 F 1.35105 * 119.93665 * 180.24994 * 7 6 5 9 9 C 1.38631 * 120.12831 * 0.50861 * 7 6 5 10 10 C 1.38238 * 120.29052 * 359.73778 * 9 7 6 11 11 C 1.38152 * 120.15975 * 0.02562 * 10 9 7 12 12 Cl 1.73605 * 120.06764 * 179.97438 * 11 10 9 13 13 C 1.46501 * 119.99549 * 179.97438 * 2 1 3 14 14 H 1.09003 * 109.46814 * 180.02562 * 13 2 1 15 15 C 1.52992 * 109.47153 * 60.00624 * 13 2 1 16 16 N 1.46492 * 109.47340 * 54.99843 * 15 13 2 17 17 C 1.36942 * 120.00391 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99728 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00236 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00016 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47301 * 89.99465 * 21 19 17 23 23 H 1.48499 * 109.46639 * 209.99539 * 21 19 17 24 24 H 1.48499 * 109.46851 * 329.99634 * 21 19 17 25 25 C 1.53001 * 109.47478 * 300.00247 * 13 2 1 26 26 C 1.52997 * 117.50067 * 116.25113 * 25 13 2 27 27 C 1.52998 * 117.50296 * 184.91510 * 25 13 2 28 28 H 1.09001 * 109.47771 * 274.94957 * 1 2 3 29 29 H 1.09002 * 109.46727 * 34.94640 * 1 2 3 30 30 H 1.09000 * 109.47207 * 154.93901 * 1 2 3 31 31 H 1.08003 * 120.08444 * 359.97438 * 6 5 3 32 32 H 1.08000 * 119.85442 * 179.72564 * 9 7 6 33 33 H 1.07995 * 119.91940 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.47296 * 175.00111 * 15 13 2 35 35 H 1.09007 * 109.47068 * 294.99490 * 15 13 2 36 36 H 0.97001 * 120.00133 * 359.97438 * 16 15 13 37 37 H 0.96998 * 120.00275 * 180.02562 * 20 19 17 38 38 H 1.09009 * 115.54805 * 330.58539 * 25 13 2 39 39 H 1.09000 * 117.50427 * 215.00810 * 26 25 13 40 40 H 1.09005 * 117.49481 * 0.03222 * 26 25 13 41 41 H 1.09004 * 117.49517 * 359.97265 * 27 25 13 42 42 H 1.08991 * 117.50209 * 144.99919 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3520 1.1686 0.0789 5 6 1.4032 2.4451 -0.0960 6 6 0.3111 2.6897 0.7386 7 6 -0.3691 3.8883 0.6468 8 9 -1.4231 4.1291 1.4570 9 6 0.0243 4.8426 -0.2786 10 6 1.1018 4.6040 -1.1111 11 6 1.7937 3.4112 -1.0262 12 17 3.1461 3.1138 -2.0734 13 6 2.1974 -1.2688 0.0006 14 1 3.2691 -1.0696 0.0009 15 6 1.8278 -2.0715 -1.2483 16 7 2.0707 -1.2574 -2.4417 17 6 1.8104 -1.7697 -3.6848 18 1 1.4264 -2.7741 -3.7853 19 6 2.0411 -0.9984 -4.8156 20 7 2.5096 0.2255 -4.6931 21 14 1.6853 -1.6970 -6.5112 22 1 0.2832 -1.3876 -6.8898 23 1 2.6109 -1.0896 -7.5008 24 1 1.8791 -3.1691 -6.4905 25 6 1.8277 -2.0706 1.2501 26 6 1.1137 -3.4082 1.0456 27 6 2.5767 -3.3820 1.4953 28 1 -0.3635 0.0887 1.0238 29 1 -0.3633 0.8424 -0.5887 30 1 -0.3633 -0.9309 -0.4353 31 1 0.0008 1.9449 1.4565 32 1 -0.5134 5.7765 -0.3496 33 1 1.4029 5.3514 -1.8302 34 1 2.4375 -2.9740 -1.2938 35 1 0.7740 -2.3469 -1.2046 36 1 2.4153 -0.3551 -2.3515 37 1 2.6704 0.7646 -5.4833 38 1 1.5489 -1.4795 2.1226 39 1 0.3652 -3.6973 1.7834 40 1 0.9078 -3.7173 0.0208 41 1 3.3326 -3.6738 0.7661 42 1 2.7906 -3.6537 2.5289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734307168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -21.824216 kcal Electronic energy + Delta-G solvation = -28098.195333 eV Core-core repulsion = 24019.869376 eV Total energy + Delta-G solvation = -4078.325957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.99420 -41.64206 -39.87691 -38.69299 -37.35341 -36.41321 -35.79824 -33.29676 -32.42381 -31.32901 -29.63580 -27.87456 -26.36054 -24.94827 -24.00838 -23.82235 -23.03596 -21.58782 -20.16303 -19.02170 -18.86457 -18.18049 -17.72662 -17.52431 -17.28334 -16.69190 -16.52307 -16.35358 -16.00039 -15.43407 -15.13613 -15.04349 -14.80964 -14.69563 -14.47218 -14.17901 -13.92941 -13.70338 -13.48852 -13.24044 -13.03082 -12.93030 -12.71925 -12.59233 -12.35863 -12.22757 -12.16737 -12.02344 -11.89210 -11.72521 -11.38575 -10.99273 -10.93965 -10.74062 -10.28441 -9.70065 -9.59406 -8.93466 -7.84678 -5.15652 -0.38885 -0.11207 1.16053 1.46788 1.48111 1.51888 1.56153 1.88425 2.35818 2.57519 2.93254 2.98466 3.33684 3.45405 3.56977 3.69339 3.84980 3.94138 4.02272 4.09766 4.14706 4.22914 4.28265 4.32621 4.45889 4.50827 4.61757 4.71856 4.78160 4.83498 4.86641 4.87506 4.95363 4.97775 5.07477 5.13531 5.23894 5.34166 5.52010 5.54884 5.59898 6.30469 6.32855 7.05639 7.39365 8.13959 8.38722 9.35183 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008366 B = 0.005326 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.215393 B = 5256.371101 C = 7267.288898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.584 5.584 3 C 0.556 3.444 4 O -0.559 6.559 5 C -0.107 4.107 6 C -0.108 4.108 7 C 0.097 3.903 8 F -0.128 7.128 9 C -0.106 4.106 10 C -0.087 4.087 11 C -0.027 4.027 12 Cl -0.051 7.051 13 C 0.169 3.831 14 H 0.069 0.931 15 C 0.146 3.854 16 N -0.741 5.741 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.066 4.066 20 N -0.947 5.947 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.273 1.273 25 C -0.164 4.164 26 C -0.167 4.167 27 C -0.171 4.171 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.168 0.832 32 H 0.185 0.815 33 H 0.170 0.830 34 H 0.026 0.974 35 H 0.041 0.959 36 H 0.374 0.626 37 H 0.246 0.754 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 5.498 15.536 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.315 5.315 3 C 0.344 3.656 4 O -0.438 6.438 5 C -0.111 4.111 6 C -0.127 4.127 7 C 0.078 3.922 8 F -0.107 7.107 9 C -0.125 4.125 10 C -0.105 4.105 11 C -0.055 4.055 12 Cl -0.022 7.022 13 C 0.066 3.934 14 H 0.087 0.913 15 C 0.019 3.981 16 N -0.384 5.384 17 C -0.380 4.380 18 H 0.091 0.909 19 C -0.260 4.260 20 N -0.596 5.596 21 Si 0.796 3.204 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.198 1.198 25 C -0.183 4.183 26 C -0.204 4.204 27 C -0.208 4.208 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.186 0.814 32 H 0.202 0.798 33 H 0.187 0.813 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.206 0.794 37 H 0.055 0.945 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.446 5.310 15.392 18.342 hybrid contribution 0.391 -0.025 -1.371 1.426 sum -8.055 5.285 14.021 17.012 Atomic orbital electron populations 1.22060 0.77787 1.03861 1.02786 1.47583 1.08090 1.04529 1.71265 1.18371 0.86784 0.84272 0.76179 1.90778 1.14801 1.87406 1.50840 1.19534 0.97898 0.94624 0.99008 1.21379 0.93403 0.97915 1.00029 1.17499 0.87253 0.94807 0.92680 1.91548 1.53757 1.94485 1.70897 1.21588 0.96602 1.00712 0.93574 1.21174 0.94425 0.94928 0.99997 1.21425 0.93254 0.96189 0.94602 1.98482 1.43656 1.95866 1.64209 1.20658 0.96172 0.82588 0.94000 0.91277 1.21247 0.98269 0.93123 0.85470 1.42497 1.78789 1.15766 1.01336 1.19493 1.35666 0.98114 0.84769 0.90902 1.25482 1.02705 0.96874 1.00906 1.69874 1.51831 1.09552 1.28341 0.85257 0.76921 0.77678 0.80506 1.21431 1.22719 1.19847 1.22419 1.07489 0.90427 0.97958 1.23215 0.95463 0.98431 1.03305 1.23041 0.95466 0.99100 1.03185 0.89105 0.91837 0.90436 0.81434 0.79776 0.81301 0.95662 0.94119 0.79391 0.94478 0.86278 0.86412 0.88943 0.89869 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.99 8.40 127.77 1.07 3.06 16 2 N -0.58 -19.51 2.24 -826.10 -1.85 -21.37 16 3 C 0.56 21.02 6.45 86.77 0.56 21.58 16 4 O -0.56 -25.43 15.20 -3.92 -0.06 -25.49 16 5 C -0.11 -3.38 4.88 -20.07 -0.10 -3.48 16 6 C -0.11 -2.50 7.77 22.57 0.18 -2.33 16 7 C 0.10 1.94 7.29 22.34 0.16 2.10 16 8 F -0.13 -2.40 17.26 44.97 0.78 -1.62 16 9 C -0.11 -1.89 10.02 22.36 0.22 -1.66 16 10 C -0.09 -2.00 9.81 22.25 0.22 -1.78 16 11 C -0.03 -0.87 6.34 22.60 0.14 -0.72 16 12 Cl -0.05 -2.08 27.18 -2.72 -0.07 -2.15 16 13 C 0.17 5.89 2.55 44.99 0.11 6.00 16 14 H 0.07 2.90 6.91 -2.39 -0.02 2.89 16 15 C 0.15 5.83 4.10 86.38 0.35 6.19 16 16 N -0.74 -38.50 5.43 -343.46 -1.87 -40.36 16 17 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 20 N -0.95 -57.95 13.06 21.65 0.28 -57.67 16 21 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.16 -4.09 5.48 -10.79 -0.06 -4.14 16 26 C -0.17 -3.53 9.50 30.62 0.29 -3.24 16 27 C -0.17 -3.78 10.00 30.62 0.31 -3.48 16 28 H 0.09 1.60 7.07 -2.39 -0.02 1.58 16 29 H 0.06 1.73 6.28 -2.39 -0.01 1.71 16 30 H 0.08 2.07 6.53 -2.39 -0.02 2.06 16 31 H 0.17 3.07 6.32 -2.91 -0.02 3.06 16 32 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.03 1.04 7.59 -2.38 -0.02 1.02 16 35 H 0.04 1.53 5.59 -2.38 -0.01 1.51 16 36 H 0.37 21.36 7.06 -92.71 -0.65 20.71 16 37 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 2.25 5.80 -2.38 -0.01 2.23 16 41 H 0.08 2.10 7.98 -2.38 -0.02 2.08 16 42 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -73.38 363.17 4.43 -68.95 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.42 Total: 29.38 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.77 Total: 1.64 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -3.44 Total: -119.40 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.06 Total: -25.49 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.07 Total: -2.15 kcal Total: -73.38 4.43 -68.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734307168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.127 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds