Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.52999 * 109.46645 * 240.00521 * 2 1 3 5 5 N 1.46510 * 109.46482 * 185.00036 * 4 2 1 6 6 C 1.34776 * 119.99685 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00053 * 180.02562 * 6 5 4 9 9 S 1.80993 * 109.47548 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00262 * 179.97438 * 9 8 6 11 11 H 1.07991 * 119.99947 * 359.97438 * 10 9 8 12 12 C 1.38793 * 119.99951 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00238 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00115 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47339 * 89.99822 * 14 12 10 16 16 H 1.48497 * 109.47215 * 210.00071 * 14 12 10 17 17 H 1.48505 * 109.46703 * 329.99825 * 14 12 10 18 18 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 19 19 C 1.34777 * 119.99665 * 275.27771 * 18 2 1 20 20 O 1.21553 * 120.00289 * 359.72074 * 19 18 2 21 21 C 1.47855 * 119.99755 * 179.72373 * 19 18 2 22 22 C 1.39595 * 120.13152 * 359.72552 * 21 19 18 23 23 C 1.37944 * 119.90248 * 179.69993 * 22 21 19 24 24 C 1.38342 * 120.17266 * 0.59241 * 23 22 21 25 25 C 1.38543 * 120.26962 * 359.68116 * 24 23 22 26 26 F 1.35100 * 119.95701 * 180.02562 * 25 24 23 27 27 C 1.38216 * 120.09029 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 29 29 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47318 * 304.99131 * 4 2 1 32 32 H 1.08988 * 109.47710 * 65.00381 * 4 2 1 33 33 H 0.97003 * 120.00089 * 359.97438 * 5 4 2 34 34 H 1.09005 * 109.46850 * 300.00165 * 8 6 5 35 35 H 1.09002 * 109.47363 * 59.99949 * 8 6 5 36 36 H 0.96997 * 120.00031 * 180.02562 * 13 12 10 37 37 H 0.97001 * 119.99790 * 94.99484 * 18 2 1 38 38 H 1.08007 * 120.04929 * 359.97438 * 22 21 19 39 39 H 1.07998 * 119.91311 * 180.29776 * 23 22 21 40 40 H 1.08001 * 119.86303 * 179.69916 * 24 23 22 41 41 H 1.07998 * 120.08535 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1729 -1.4290 -2.1908 7 8 3.5697 -1.8848 -3.1392 8 6 5.6748 -1.5377 -2.1302 9 16 6.2782 -2.3907 -3.6081 10 6 8.0099 -2.3778 -3.2834 11 1 8.3862 -1.9247 -2.3782 12 6 8.8905 -2.9499 -4.1909 13 7 8.4318 -3.5026 -5.2940 14 14 10.7264 -2.9369 -3.8463 15 1 11.0973 -4.1616 -3.0928 16 1 11.4709 -2.9014 -5.1306 17 1 11.0704 -1.7373 -3.0414 18 7 2.0183 -0.6907 1.1961 19 6 2.1417 -0.0197 2.3585 20 8 1.8526 1.1597 2.4131 21 6 2.6287 -0.7183 3.5672 22 6 2.9561 -2.0740 3.5089 23 6 3.4160 -2.7196 4.6379 24 6 3.5419 -2.0299 5.8305 25 6 3.2136 -0.6856 5.8979 26 9 3.3395 -0.0181 7.0657 27 6 2.7575 -0.0264 4.7719 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7197 -1.2953 32 1 1.7516 -0.1582 -2.1370 33 1 3.9824 -0.4621 -0.4319 34 1 6.1097 -0.5392 -2.0844 35 1 5.9628 -2.1006 -1.2424 36 1 9.0472 -3.9028 -5.9281 37 1 2.2489 -1.6319 1.1525 38 1 2.8537 -2.6157 2.5801 39 1 3.6739 -3.7673 4.5918 40 1 3.8978 -2.5415 6.7126 41 1 2.5021 1.0216 4.8244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738564015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = -97.606389 kcal Electronic energy + Delta-G solvation = -25651.129430 eV Core-core repulsion = 21571.561018 eV Total energy + Delta-G solvation = -4079.568412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.34704 -40.77111 -39.36215 -38.61303 -36.58069 -33.84827 -32.46161 -32.36057 -31.45254 -30.46998 -29.41416 -26.11795 -25.44477 -24.80959 -23.17989 -21.89787 -20.91633 -20.42031 -18.94395 -17.89092 -17.20889 -16.75720 -16.69744 -16.35029 -16.27303 -16.08358 -15.78365 -15.26760 -15.11569 -14.83188 -14.48806 -14.30501 -14.09637 -13.67163 -13.51008 -13.20868 -13.05719 -12.97205 -12.66359 -12.57947 -12.52015 -12.27451 -11.87479 -11.84371 -11.35826 -11.08976 -11.05613 -10.78929 -10.40355 -9.85606 -9.73775 -9.57734 -9.46747 -9.30250 -9.10892 -9.02184 -8.28231 -6.54091 -6.24919 -3.95890 0.18488 0.62923 2.31692 2.56928 2.96166 3.01135 3.20117 3.22535 3.25754 3.29598 3.63725 3.72838 4.08971 4.17311 4.20742 4.31574 4.45962 4.51563 4.74299 4.76479 4.89480 5.08171 5.10433 5.14844 5.27457 5.32533 5.41817 5.46135 5.49844 5.60393 5.63589 5.69960 5.70352 5.82807 5.84944 6.02990 6.08724 6.25374 6.46869 7.00911 7.56157 7.58306 7.73069 8.32071 8.50831 9.20605 10.82470 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.002419 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.002823 B =11572.785749 C =13602.535947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.099 0.901 4 C 0.113 3.887 5 N -0.741 5.741 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.720 5.720 19 C 0.562 3.438 20 O -0.529 6.529 21 C -0.107 4.107 22 C -0.095 4.095 23 C -0.095 4.095 24 C -0.128 4.128 25 C 0.092 3.908 26 F -0.135 7.135 27 C -0.096 4.096 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.403 0.597 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 3.692 21.567 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.117 0.883 4 C -0.012 4.012 5 N -0.396 5.396 6 C 0.319 3.681 7 O -0.389 6.389 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.373 5.373 19 C 0.349 3.651 20 O -0.407 6.407 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.147 4.147 25 C 0.073 3.927 26 F -0.114 7.114 27 C -0.115 4.115 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.240 0.760 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.878 3.722 19.844 25.686 hybrid contribution 2.276 0.320 1.902 2.983 sum -13.603 4.042 21.746 25.966 Atomic orbital electron populations 1.22114 0.93787 1.02825 1.03268 1.21311 0.95123 0.97949 0.82917 0.88341 1.21626 0.81198 1.01383 0.96998 1.46018 1.06758 1.62117 1.24741 1.20330 0.89541 0.76708 0.81567 1.90715 1.69849 1.45943 1.32410 1.23533 0.93450 1.05769 1.07711 1.85392 1.04671 1.73000 1.20211 1.22858 0.91492 1.44349 1.09707 0.90928 1.24992 0.99613 0.94531 0.94429 1.70014 1.35461 1.35392 1.09410 0.86168 0.82806 0.78627 0.77906 1.20258 1.20735 1.19677 1.46036 1.67380 1.14498 1.09384 1.18133 0.77593 0.86451 0.82959 1.90806 1.49606 1.15330 1.84912 1.19737 1.03293 0.94203 0.93767 1.21437 0.97340 0.93230 0.99405 1.21030 0.98026 1.00770 0.91436 1.21422 1.00551 0.92716 1.00043 1.17563 1.02383 0.90817 0.81953 1.91537 1.93706 1.80492 1.45639 1.21232 0.98161 1.01665 0.90488 0.91518 0.90848 0.91904 0.90802 0.89743 0.76708 0.89204 0.89244 0.92156 0.76027 0.84686 0.83982 0.84103 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 2 C 0.13 1.05 2.73 -67.93 -0.19 0.86 16 3 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 4 C 0.11 1.09 5.23 -4.04 -0.02 1.07 16 5 N -0.74 -8.78 5.39 -60.29 -0.32 -9.10 16 6 C 0.53 9.23 7.85 -10.99 -0.09 9.15 16 7 O -0.52 -11.01 15.86 5.55 0.09 -10.92 16 8 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 14 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 N -0.72 -5.32 4.47 -54.75 -0.24 -5.57 16 19 C 0.56 5.32 7.74 -12.32 -0.10 5.23 16 20 O -0.53 -6.79 16.01 5.32 0.09 -6.70 16 21 C -0.11 -0.87 5.87 -104.98 -0.62 -1.49 16 22 C -0.10 -0.58 9.54 -39.18 -0.37 -0.95 16 23 C -0.09 -0.51 10.03 -39.65 -0.40 -0.91 16 24 C -0.13 -0.80 10.02 -39.43 -0.40 -1.20 16 25 C 0.09 0.75 7.29 -39.48 -0.29 0.46 16 26 F -0.14 -1.24 17.26 2.25 0.04 -1.20 16 27 C -0.10 -0.84 9.57 -39.11 -0.37 -1.21 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.88 8.14 -51.94 -0.42 0.45 16 33 H 0.40 3.96 8.14 -40.82 -0.33 3.63 16 34 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.40 2.30 6.64 -40.82 -0.27 2.03 16 38 H 0.14 0.54 6.40 -52.48 -0.34 0.20 16 39 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.15 1.35 7.65 -52.49 -0.40 0.94 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -35.63 375.80 -8.34 -43.97 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.08 Total: 1.85 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.06 Total: -5.23 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.16 Total: -39.74 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.63 -8.34 -43.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738564015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.632 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds